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Pratyush K. Kollepara

Publications and source records attributed to Pratyush K. Kollepara.

3 recordsLinked to original sources

Modeling complex systems: A case study of compartmental models in epidemiology

Compartmental epidemic models have been widely used for predicting the course of epidemics, from estimating the basic reproduction number to guiding intervention policies. Studies commonly acknowledge these models' assumptions but less often justify their validity in the specific context in which they are being used. Our purpose is not to argue for specific alternatives or modifications to compartmental models, but rather to show how assumptions can constrain model outcomes to a narrow portion of the wide landscape of potential epidemic behaviors. This concrete examination of well-known models also serves to illustrate general principles of modeling that can be applied in other contexts.

q-bio.PE↗

Questioning the use of global estimates of reproduction numbers, with implications for policy

The basic reproduction number, $R_0$ is an important and widely used concept in the study of infectious diseases. We briefly review the recent trend of calculating the average of various $R_0$ estimates in systematic reviews aimed at estimating the basic reproduction number of SARS-CoV-2, and discuss the drawbacks and implications of using such averaging methods. Additionally, we argue that even a theoretically grounded approach such as next generation matrix could have practical impediments in its use. More generally, the practice of associating an infectious disease with a single value of $R_0$ is problematic, when the disease can, in fact have different reproduction numbers in various populations.

q-bio.PE↗

Unmasking the mask studies: why the effectiveness of surgical masks in preventing respiratory infections has been underestimated

Face masks have been widely used as a protective measure against COVID-19. However, pre-pandemic empirical studies have produced mixed statistical results on the effectiveness of masks against respiratory viruses. The implications of the studies' recognized limitations have not been quantitatively and statistically analyzed, leading to confusion regarding the effectiveness of masks. Such confusion may have contributed to organizations such as the WHO and CDC initially not recommending that the general public wear masks. Here we show that when the adherence to mask-usage guidelines is taken into account, the empirical evidence indicates that masks prevent disease transmission: all studies we analyzed that did not find surgical masks to be effective were under-powered to such an extent that even if masks were 100% effective, the studies in question would still have been unlikely to find a statistically significant effect. We also provide a framework for understanding the effect of masks on the probability of infection for single and repeated exposures. The framework demonstrates that more frequently wearing a mask provides super-linearly compounding protection, as does both the susceptible and infected individual wearing a mask. This work shows (1) that both theoretical and empirical evidence is consistent with masks protecting against respiratory infections and (2) that nonlinear effects and statistical considerations regarding the percentage of exposures for which masks are worn must be taken into account when designing empirical studies and interpreting their results.

q-bio.QM↗