arXiv subjects

Primož Ziherl

Publications and source records attributed to Primož Ziherl.

7 recordsLinked to original sources

arXiv2026

Contact Forces in Microgel Suspensions

Within a model where micrometer-size soft colloidal particles are viewed as liquid drops, we theoretically study the contact interaction between them. We compute the exact deformation energy across a broad range of indentations and for various model parameters, and we show that it can be reproduced using either truncated superball or truncated spheropolyhedral variational shapes depending on the parameters. At large surface tensions representative of microgels, this energy is pairwise additive well beyond small indentations and can be approximated by a power-law dependence on indentation with an exponent around 2.

cond-mat.soft↗

arXiv2024

Basolateral mechanics prevents rigidity transition in epithelial monolayers

The mechanics of epithelial tissues, which is governed by forces generated in various cell domains, is often investigated using two-dimensional models that account for the apically-positioned actomyosin structures but neglect basolateral mechanics. We employ a more detailed three-dimensional model to study how lateral surface tensions affect the structure and rigidity of such tissues. We find that cells are apicobasally asymmetric, with one side appearing more ordered than the other depending on cell target perimeter. In contrast to the 2D model, which predicts a rigidity transition at large target perimeters, tissues in the 3D model remain solid-like across all parameter space.

cond-mat.soft↗

arXiv2023

Wrinkling instability in unsupported epithelial sheets

We investigate the elasticity of unsupported epithelial monolayer and we discover that unlike a thin solid plate, which wrinkles if geometrically incompatible with the underlying substrate, the epithelium may do so even in absence of the substrate. From a cell-based model, we derive an exact elasticity theory and discover wrinkling driven by the differential apico-basal surface tension. Our theory can be mapped onto that for solid plates by introducing a phantom substrate whose stiffness is finite beyond a critical differential tension. This suggests a new mechanism for an autonomous control of tissues over the length scale of their surface patterns.

cond-mat.soft↗

arXiv2021

Morphologies of compressed active epithelial monolayers

Using a three-dimensional active vertex model, we numerically study the shapes of strained unsupported epithelial monolayers subject to active junctional noise due to stochastic binding and unbinding of myosin. We find that while uniaxial, biaxial, and isotropic in-plane compressive strains do lead to the formation of longitudinal, herringbone-pattern, and labyrinthine folds, respectively, the villus morphology characteristic of, e.g., the small intestine appears only if junctional tension fluctuations are strong enough to fluidize the tissue. Moreover, the fluidized epithelium features villi even in absence of compressive strain provided that the apico-basal differential tension is large enough. We analyze several details of the different epithelial forms including the role of strain rate and the modulation of tissue thickness across folds. Our results show that nontrivial morphologies can form even in unsupported, non-patterned epithelia.

cond-mat.soft↗

arXiv2020

Collective Cell Mechanics of Small-Organoid Morphologies

The study of organoids, artificially grown cell aggregates with the functionality and small-scale anatomy of real organs, is one of the most active areas of research in biology and biophysics, yet the basic physical origins of their different morphologies remain poorly understood. Here we propose a mechanistic theory of small-organoid morphologies. Using a 3D surface-tension-based vertex model, we reproduce the characteristic shapes, ranging from branched and budded structures to invaginated shapes. We find that the formation of branched morphologies relies strongly on junctional activity, enabling temporary aggregations of topological defects in cell packing. To elucidate our numerical results, we develop an effective elasticity theory, which allows one to estimate the apico-basal polarity from the organoid-scale modulation of cell height. Our work provides a generic interpretation of the observed small-organoid morphologies, highlighting the role of physical factors such as the differential surface tension, cell rearrangements, and tissue growth.

physics.bio-ph↗

arXiv2018

Fluidization of epithelial sheets by active cell rearrangements

We theoretically explore fluidization of epithelial tissues by active T1 neighbor exchanges. We show that the geometry of cell-cell junctions encodes important information about the local features of the energy landscape, which we support by an elastic theory of T1 transformations. Using a 3D vertex model, we show that the degree of active noise driving forced cell rearrangements governs the stress-relaxation time-scale of the tissue. We study tissue response to in-plane shear at different time scales. At short time, the tissue behaves as a solid, whereas its long-time fluid behavior can be associated with an effective viscosity which scales with the rate of active T1 transformations. Furthermore, we develop a coarse-grained theory, where we treat the tissue as an active fluid and confirm the results of the vertex model. The impact of cell rearrangements on tissue shape is illustrated by studying axial compression of an epithelial tube.

cond-mat.soft↗

arXiv2014

Antinematic local order in dendrimer liquids

We use monomer-resolved numerical simulations to study the positional and orientational structure of a dense dendrimer solution, focusing on the effects of dendrimers' prolate shape and deformability on the short-range order. Our results provide unambiguous evidence that the nearest-neighbor shell of a tagged particle consists of a mixture of crossed, side-by-side, side-to-end, and end-to-end pair configurations, imposing antinematic rather than nematic order observed in undeformable rodlike particles. This packing pattern persists even at densities where particle overlap becomes sizable. We demonstrate that the antinematic arrangement is compatible with the A15 crystal lattice reported in several dendrimer compounds.

cond-mat.soft↗