SearcharxivSearch

arXiv subjects

Priya Misner

Publications and source records attributed to Priya Misner.

3 recordsLinked to original sources

Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools

Analysis of genomics data is central to nearly all areas of modern biology. Despite significant progress in artificial intelligence (AI) and computational methods, these technologies require significant human oversight to generate novel and reliable biological insights. Consequently, the genomics community has developed a substantial number of diverse visualization approaches and a proliferation of tools that biologists rely on in their data analysis workflows. While there are a few commonly used visualization tools for genomics data, many tools target specific use cases for genomics data interpretation and offer only a limited, predefined set of visualization types. Moreover, static visualizations often fail to support exploratory analysis. Developing interactive visualizations and tools typically requires significant time and technical expertise, even when supported by modern LLM-powered coding assistants, and the resulting visualizations can be difficult to share among collaborators. We developed Gosling Designer, an all-in-one platform for editing, exploring, and sharing visualizations of genomics data. Gosling Designer addresses four key challenges observed in existing genomics visualization tools: (1) limited versatility, (2) difficulty of visualization authoring, (3) complexity of data management, and (4) barriers to sharing and collaboration.

q-bio.GN

YAC: Bridging Natural Language and Interactive Visual Exploration with Generative AI for Biomedical Data Discovery

Incorporating natural language input has the potential to improve the capabilities of biomedical data discovery interfaces. However, user interface elements and visualizations are still powerful tools for interacting with data. In our prototype system, YAC, Yet Another Chatbot, we integrate natural language and interactive visualizations. YAC uses a tool-calling multi-agent system to generate declarative output, which is interpreted to render linked interactive visualizations and apply data filters. We also include adjustment widgets, which allow users to directly modify the structured output. Structured text is also generated to clarify user intent, notify users of system boundaries, and explain aspects of the data with live data element links. We conducted a user study with domain experts to surface areas where YAC can be improved. Furthermore we reflect on the capabilities and design of this system with an analysis of its technical dimensions.

cs.HC

A Generative AI System for Biomedical Data Discovery with Grammar-Based Visualizations

We explore the potential for combining generative AI with grammar-based visualizations for biomedical data discovery. In our prototype, we use a multi-agent system to generate visualization specifications and apply filters. These visualizations are linked together, resulting in an interactive dashboard that is progressively constructed. Our system leverages the strengths of natural language while maintaining the utility of traditional user interfaces. Furthermore, we utilize generated interactive widgets enabling user adjustment. Finally, we demonstrate the potential utility of this system for biomedical data discovery with a case study.

cs.HC