arXiv subjects

Pyeong Jun Park

Publications and source records attributed to Pyeong Jun Park.

3 recordsLinked to original sources

arXiv1998

Statistical Mechanics of Membrane Protein Conformation: A Homopolymer Model

The conformation and the phase diagram of a membrane protein are investigated via grand canonical ensemble approach using a homopolymer model. We discuss the nature and pathway of $α$-helix integration into the membrane that results depending upon membrane permeability and polymer adsorptivity. For a membrane with the permeability larger than a critical value, the integration becomes the second order transition that occurs at the same temperature as that of the adsorption transition. For a nonadsorbing membrane, the integration is of the first order due to the aggregation of $α$-helices.

cond-mat.soft↗

arXiv1998

Polymer translocation induced by adsorption

We study the translocation of a flexible polymer through a pore in a membrane induced by its adsorption on \trans side of the membrane. When temperature $T$ is higher than $T_c$, the adsorption-desorption transition temperature, attractive interaction between polymer and membrane plays little role in affecting polymer conformation, leading to translocation time that scales as $τ\sim L^3$ where $L$ is the polymer contour length. When $T < T_c$, however, the translocation time undergoes a sharp crossover to $τ\sim L^2$ for sufficiently long polymers, following the second order conformational (adsorption) transition. The translocation time is found to exhibit the crossover around $T=T_c'$, which is lower than $T_c$ for polymers shorter than a critical length($N<N_c$).

cond-mat.soft↗

arXiv1998

Polymer Release out of a Spherical Vesicle through a Pore

Translocation of a polymer out of curved surface or membrane is studied via mean first passage time approach. Membrane curvature gives rise to a constraint on polymer conformation, which effectively drives the polymer to the outside of membrane where the available volume of polymer conformational fluctuation is larger. Considering a polymer release out of spherical vesicle, polymer translocation time $τ$ is changed to the scaling behavior $τ\sim L^2$ for $R<R_G$, from $τ\sim L^3$ for $R\gg R_G$, where $L$ is the polymer contour length and $R$, $R_G$ are vesicle radius and polymer radius of gyration respectively. Also the polymer capture into a spherical budd is studied and possible apparatus for easy capture is suggested.

cond-mat.soft↗