arXiv subjects

Qi Yang

Publications and source records attributed to Qi Yang.

At least 109 records · Page 6Linked to original sources

arXiv2024

Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration

Whole brain segmentation with magnetic resonance imaging (MRI) enables the non-invasive measurement of brain regions, including total intracranial volume (TICV) and posterior fossa volume (PFV). Enhancing the existing whole brain segmentation methodology to incorporate intracranial measurements offers a heightened level of comprehensiveness in the analysis of brain structures. Despite its potential, the task of generalizing deep learning techniques for intracranial measurements faces data availability constraints due to limited manually annotated atlases encompassing whole brain and TICV/PFV labels. In this paper, we enhancing the hierarchical transformer UNesT for whole brain segmentation to achieve segmenting whole brain with 133 classes and TICV/PFV simultaneously. To address the problem of data scarcity, the model is first pretrained on 4859 T1-weighted (T1w) 3D volumes sourced from 8 different sites. These volumes are processed through a multi-atlas segmentation pipeline for label generation, while TICV/PFV labels are unavailable. Subsequently, the model is finetuned with 45 T1w 3D volumes from Open Access Series Imaging Studies (OASIS) where both 133 whole brain classes and TICV/PFV labels are available. We evaluate our method with Dice similarity coefficients(DSC). We show that our model is able to conduct precise TICV/PFV estimation while maintaining the 132 brain regions performance at a comparable level. Code and trained model are available at: https://github.com/MASILab/UNesT/tree/main/wholebrainSeg.

eess.IV↗

arXiv2024

Cooperation Does Matter: Exploring Multi-Order Bilateral Relations for Audio-Visual Segmentation

Recently, an audio-visual segmentation (AVS) task has been introduced, aiming to group pixels with sounding objects within a given video. This task necessitates a first-ever audio-driven pixel-level understanding of the scene, posing significant challenges. In this paper, we propose an innovative audio-visual transformer framework, termed COMBO, an acronym for COoperation of Multi-order Bilateral relatiOns. For the first time, our framework explores three types of bilateral entanglements within AVS: pixel entanglement, modality entanglement, and temporal entanglement. Regarding pixel entanglement, we employ a Siam-Encoder Module (SEM) that leverages prior knowledge to generate more precise visual features from the foundational model. For modality entanglement, we design a Bilateral-Fusion Module (BFM), enabling COMBO to align corresponding visual and auditory signals bi-directionally. As for temporal entanglement, we introduce an innovative adaptive inter-frame consistency loss according to the inherent rules of temporal. Comprehensive experiments and ablation studies on AVSBench-object (84.7 mIoU on S4, 59.2 mIou on MS3) and AVSBench-semantic (42.1 mIoU on AVSS) datasets demonstrate that COMBO surpasses previous state-of-the-art methods. Code and more results will be publicly available at https://yannqi.github.io/AVS-COMBO/.

cs.CV↗

arXiv2024

Ziya2: Data-centric Learning is All LLMs Need

Various large language models (LLMs) have been proposed in recent years, including closed- and open-source ones, continually setting new records on multiple benchmarks. However, the development of LLMs still faces several issues, such as high cost of training models from scratch, and continual pre-training leading to catastrophic forgetting, etc. Although many such issues are addressed along the line of research on LLMs, an important yet practical limitation is that many studies overly pursue enlarging model sizes without comprehensively analyzing and optimizing the use of pre-training data in their learning process, as well as appropriate organization and leveraging of such data in training LLMs under cost-effective settings. In this work, we propose Ziya2, a model with 13 billion parameters adopting LLaMA2 as the foundation model, and further pre-trained on 700 billion tokens, where we focus on pre-training techniques and use data-centric optimization to enhance the learning process of Ziya2 on different stages. We define three data attributes and firstly establish data-centric scaling laws to illustrate how different data impacts LLMs. Experiments show that Ziya2 significantly outperforms other models in multiple benchmarks especially with promising results compared to representative open-source ones. Ziya2 (Base) is released at https://huggingface.co/IDEA-CCNL/Ziya2-13B-Base and https://modelscope.cn/models/Fengshenbang/Ziya2-13B-Base/summary.

cs.CL↗

arXiv2024

Contrastive Pre-Training with Multi-View Fusion for No-Reference Point Cloud Quality Assessment

No-reference point cloud quality assessment (NR-PCQA) aims to automatically evaluate the perceptual quality of distorted point clouds without available reference, which have achieved tremendous improvements due to the utilization of deep neural networks. However, learning-based NR-PCQA methods suffer from the scarcity of labeled data and usually perform suboptimally in terms of generalization. To solve the problem, we propose a novel contrastive pre-training framework tailored for PCQA (CoPA), which enables the pre-trained model to learn quality-aware representations from unlabeled data. To obtain anchors in the representation space, we project point clouds with different distortions into images and randomly mix their local patches to form mixed images with multiple distortions. Utilizing the generated anchors, we constrain the pre-training process via a quality-aware contrastive loss following the philosophy that perceptual quality is closely related to both content and distortion. Furthermore, in the model fine-tuning stage, we propose a semantic-guided multi-view fusion module to effectively integrate the features of projected images from multiple perspectives. Extensive experiments show that our method outperforms the state-of-the-art PCQA methods on popular benchmarks. Further investigations demonstrate that CoPA can also benefit existing learning-based PCQA models.

cs.CV↗

arXiv2024

Tractography with T1-weighted MRI and associated anatomical constraints on clinical quality diffusion MRI

Diffusion MRI (dMRI) streamline tractography, the gold standard for in vivo estimation of brain white matter (WM) pathways, has long been considered indicative of macroscopic relationships with WM microstructure. However, recent advances in tractography demonstrated that convolutional recurrent neural networks (CoRNN) trained with a teacher-student framework have the ability to learn and propagate streamlines directly from T1 and anatomical contexts. Training for this network has previously relied on high-resolution dMRI. In this paper, we generalize the training mechanism to traditional clinical resolution data, which allows generalizability across sensitive and susceptible study populations. We train CoRNN on a small subset of the Baltimore Longitudinal Study of Aging (BLSA), which better resembles clinical protocols. Then, we define a metric, termed the epsilon ball seeding method, to compare T1 tractography and traditional diffusion tractography at the streamline level. Under this metric, T1 tractography generated by CoRNN reproduces diffusion tractography with approximately two millimeters of error.

eess.IV↗

arXiv2024

PAME: Self-Supervised Masked Autoencoder for No-Reference Point Cloud Quality Assessment

No-reference point cloud quality assessment (NR-PCQA) aims to automatically predict the perceptual quality of point clouds without reference, which has achieved remarkable performance due to the utilization of deep learning-based models. However, these data-driven models suffer from the scarcity of labeled data and perform unsatisfactorily in cross-dataset evaluations. To address this problem, we propose a self-supervised pre-training framework using masked autoencoders (PAME) to help the model learn useful representations without labels. Specifically, after projecting point clouds into images, our PAME employs dual-branch autoencoders, reconstructing masked patches from distorted images into the original patches within reference and distorted images. In this manner, the two branches can separately learn content-aware features and distortion-aware features from the projected images. Furthermore, in the model fine-tuning stage, the learned content-aware features serve as a guide to fuse the point cloud quality features extracted from different perspectives. Extensive experiments show that our method outperforms the state-of-the-art NR-PCQA methods on popular benchmarks in terms of prediction accuracy and generalizability.

cs.CV↗

arXiv2024

Superfolded configuration induced low thermal conductivity in two-dimensional carbon allotropes revealed via machine learning force constant potential

Understanding the fundamental link between structure and functionalization is crucial for the design and optimization of functional materials, since different structural configurations could trigger materials to demonstrate diverse physical, chemical, and electronic properties. However, the correlation between crystal structure and thermal conductivity (\k{appa}) remains enigmatic. In this study, taking two-dimensional (2D) carbon allotropes as study cases, we utilize phonon Boltzmann transport equation (BTE) along with machine learning force constant potential to thoroughly explore the complex folding structure of pure sp2 hybridized carbon materials from the perspective of crystal structure, mode-level phonon resolved thermal transport, and atomic interactions, with the goal of identifying the underlying relationship between 2D geometry and \k{appa}. We propose two potential structure evolution mechanisms for targeted thermal transport properties: in-plane and out-of-plane folding evolutions, which are generally applicable to 2D carbon allotropes. It is revealed that the folded structure produces strong symmetry breaking, and simultaneously produces exceptionally strongly suppressed phonon group velocities, strong phonon-phonon scattering, and weak phonon hydrodynamics, which ultimately lead to low \k{appa}. The insight into the folded effect of atomic structures on thermal transport deepens our understanding of the relationship between structure and functionalization, which offers straightforward guidance for designing novel nanomaterials with targeted \k{appa}, as well as propel developments in materials science and engineering.

cond-mat.mtrl-sci↗

arXiv2024

Predicting Age from White Matter Diffusivity with Residual Learning

Imaging findings inconsistent with those expected at specific chronological age ranges may serve as early indicators of neurological disorders and increased mortality risk. Estimation of chronological age, and deviations from expected results, from structural MRI data has become an important task for developing biomarkers that are sensitive to such deviations. Complementary to structural analysis, diffusion tensor imaging (DTI) has proven effective in identifying age-related microstructural changes within the brain white matter, thereby presenting itself as a promising additional modality for brain age prediction. Although early studies have sought to harness DTI's advantages for age estimation, there is no evidence that the success of this prediction is owed to the unique microstructural and diffusivity features that DTI provides, rather than the macrostructural features that are also available in DTI data. Therefore, we seek to develop white-matter-specific age estimation to capture deviations from normal white matter aging. Specifically, we deliberately disregard the macrostructural information when predicting age from DTI scalar images, using two distinct methods. The first method relies on extracting only microstructural features from regions of interest. The second applies 3D residual neural networks (ResNets) to learn features directly from the images, which are non-linearly registered and warped to a template to minimize macrostructural variations. When tested on unseen data, the first method yields mean absolute error (MAE) of 6.11 years for cognitively normal participants and MAE of 6.62 years for cognitively impaired participants, while the second method achieves MAE of 4.69 years for cognitively normal participants and MAE of 4.96 years for cognitively impaired participants. We find that the ResNet model captures subtler, non-macrostructural features for brain age prediction.

eess.IV↗

arXiv2023

TCDM: Transformational Complexity Based Distortion Metric for Perceptual Point Cloud Quality Assessment

The goal of objective point cloud quality assessment (PCQA) research is to develop quantitative metrics that measure point cloud quality in a perceptually consistent manner. Merging the research of cognitive science and intuition of the human visual system (HVS), in this paper, we evaluate the point cloud quality by measuring the complexity of transforming the distorted point cloud back to its reference, which in practice can be approximated by the code length of one point cloud when the other is given. For this purpose, we first make space segmentation for the reference and distorted point clouds based on a 3D Voronoi diagram to obtain a series of local patch pairs. Next, inspired by the predictive coding theory, we utilize a space-aware vector autoregressive (SA-VAR) model to encode the geometry and color channels of each reference patch with and without the distorted patch, respectively. Assuming that the residual errors follow the multi-variate Gaussian distributions, the self-complexity of the reference and transformational complexity between the reference and distorted samples are computed using covariance matrices. Additionally, the prediction terms generated by SA-VAR are introduced as one auxiliary feature to promote the final quality prediction. The effectiveness of the proposed transformational complexity based distortion metric (TCDM) is evaluated through extensive experiments conducted on five public point cloud quality assessment databases. The results demonstrate that TCDM achieves state-of-the-art (SOTA) performance, and further analysis confirms its robustness in various scenarios. The code is publicly available at https://github.com/zyj1318053/TCDM.

cs.CV↗

arXiv2023

Uncertainty-aware Language Modeling for Selective Question Answering

We present an automatic large language model (LLM) conversion approach that produces uncertainty-aware LLMs capable of estimating uncertainty with every prediction. Our approach is model- and data-agnostic, is computationally-efficient, and does not rely on external models or systems. We evaluate converted models on the selective question answering setting -- to answer as many questions as possible while maintaining a given accuracy, forgoing providing predictions when necessary. As part of our results, we test BERT and Llama 2 model variants on the SQuAD extractive QA task and the TruthfulQA generative QA task. We show that using the uncertainty estimates provided by our approach to selectively answer questions leads to significantly higher accuracy over directly using model probabilities.

cs.CL↗

arXiv2023

TSMD: A Database for Static Color Mesh Quality Assessment Study

Static meshes with texture map are widely used in modern industrial and manufacturing sectors, attracting considerable attention in the mesh compression community due to its huge amount of data. To facilitate the study of static mesh compression algorithm and objective quality metric, we create the Tencent - Static Mesh Dataset (TSMD) containing 42 reference meshes with rich visual characteristics. 210 distorted samples are generated by the lossy compression scheme developed for the Call for Proposals on polygonal static mesh coding, released on June 23 by the Alliance for Open Media Volumetric Visual Media group. Using processed video sequences, a large-scale, crowdsourcing-based, subjective experiment was conducted to collect subjective scores from 74 viewers. The dataset undergoes analysis to validate its sample diversity and Mean Opinion Scores (MOS) accuracy, establishing its heterogeneous nature and reliability. State-of-the-art objective metrics are evaluated on the new dataset. Pearson and Spearman correlations around 0.75 are reported, deviating from results typically observed on less heterogeneous datasets, demonstrating the need for further development of more robust metrics. The TSMD, including meshes, PVSs, bitstreams, and MOS, is made publicly available at the following location: https://multimedia.tencent.com/resources/tsmd.

cs.CV↗

arXiv2023

Characterization of the Three-Dimensional Fivefold Translative Tiles

This paper proves the following statement: If a convex body can form a fivefold translative tiling in $\mathbb{E}^3$, it must be a parallelotope, a hexagonal prism, a rhombic dodecahedron, an elongated dodecahedron, a truncated octahedron, a cylinder over a particular octagon, or a cylinder over a particular decagon, where the octagon and the decagon are fivefold translative tiles in $\mathbb{E}^2$. Furthermore, it presents an example of multiple tiles in $\mathbb{E}^3$ with multiplicity at most 10 which is neither a parallelohedron nor a cylinder.

math.MG↗

arXiv2023

Orca: A Few-shot Benchmark for Chinese Conversational Machine Reading Comprehension

The conversational machine reading comprehension (CMRC) task aims to answer questions in conversations, which has been a hot research topic in recent years because of its wide applications. However, existing CMRC benchmarks in which each conversation is assigned a static passage are inconsistent with real scenarios. Thus, model's comprehension ability towards real scenarios are hard to evaluate reasonably. To this end, we propose the first Chinese CMRC benchmark Orca and further provide zero-shot/few-shot settings to evaluate model's generalization ability towards diverse domains. We collect 831 hot-topic driven conversations with 4,742 turns in total. Each turn of a conversation is assigned with a response-related passage, aiming to evaluate model's comprehension ability more reasonably. The topics of conversations are collected from social media platform and cover 33 domains, trying to be consistent with real scenarios. Importantly, answers in Orca are all well-annotated natural responses rather than the specific spans or short phrase in previous datasets. Besides, we implement three strong baselines to tackle the challenge in Orca. The results indicate the great challenge of our CMRC benchmark. Our datatset and checkpoints are available at https://github.com/nuochenpku/Orca.

cs.CL↗

arXiv2023

DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution

The application of 3D ViTs to medical image segmentation has seen remarkable strides, somewhat overshadowing the budding advancements in Convolutional Neural Network (CNN)-based models. Large kernel depthwise convolution has emerged as a promising technique, showcasing capabilities akin to hierarchical transformers and facilitating an expansive effective receptive field (ERF) vital for dense predictions. Despite this, existing core operators, ranging from global-local attention to large kernel convolution, exhibit inherent trade-offs and limitations (e.g., global-local range trade-off, aggregating attentional features). We hypothesize that deformable convolution can be an exploratory alternative to combine all advantages from the previous operators, providing long-range dependency, adaptive spatial aggregation and computational efficiency as a foundation backbone. In this work, we introduce 3D DeformUX-Net, a pioneering volumetric CNN model that adeptly navigates the shortcomings traditionally associated with ViTs and large kernel convolution. Specifically, we revisit volumetric deformable convolution in depth-wise setting to adapt long-range dependency with computational efficiency. Inspired by the concepts of structural re-parameterization for convolution kernel weights, we further generate the deformable tri-planar offsets by adapting a parallel branch (starting from $1\times1\times1$ convolution), providing adaptive spatial aggregation across all channels. Our empirical evaluations reveal that the 3D DeformUX-Net consistently outperforms existing state-of-the-art ViTs and large kernel convolution models across four challenging public datasets, spanning various scales from organs (KiTS: 0.680 to 0.720, MSD Pancreas: 0.676 to 0.717, AMOS: 0.871 to 0.902) to vessels (e.g., MSD hepatic vessels: 0.635 to 0.671) in mean Dice.

cs.CV↗

arXiv2023

Public verifiable measurement-only blind quantum computation based on entanglement witnesses

Recently, Sato et al. proposed an public verifiable blind quantum computation (BQC) protocol by inserting a third-party arbiter. However, it is not true public verifiable in a sense, because the arbiter is determined in advance and participates in the whole process. In this paper, a public verifiable protocol for measurement-only BQC is proposed. The fidelity between arbitrary states and the graph states of 2-colorable graphs is estimated by measuring the entanglement witnesses of the graph states,so as to verify the correctness of the prepared graph states. Compared with the previous protocol, our protocol is public verifiable in the true sense by allowing other random clients to execute the public verification. It also has greater advantages in the efficiency, where the number of local measurements is O(n^3*log {n}) and graph states' copies is O(n^2*log{n}).

quant-ph↗

arXiv2023

Quantum Privacy-preserving Two-party Circle Intersection Protocol Based on Phase-encoded Query

Privacy-preserving geometric intersection (PGI) is an important issue in Secure multiparty computation (SMC). The existing quantum PGI protocols are mainly based on grid coding, which requires a lot of computational complexity. The phase-encoded query method which has been used in some Quantum SMC protocols is suitable to solve the decision problem, but it needs to apply high dimensional Oracle operators. In this paper, we use the principle of phase-encoded query to solve an important PGI problem, namely privacy-preserving two-party circle intersection. We study the implementation of Oracle operator in detail, and achieve polynomial computational complexity by decompsing it into quantum arithmetic operations. Performance analysis shows that our protocol is correct and efficient, and can protect the privacy of all participants against internal and external attacks.

quant-ph↗

arXiv2023

SJTU-TMQA: A quality assessment database for static mesh with texture map

In recent years, static meshes with texture maps have become one of the most prevalent digital representations of 3D shapes in various applications, such as animation, gaming, medical imaging, and cultural heritage applications. However, little research has been done on the quality assessment of textured meshes, which hinders the development of quality-oriented applications, such as mesh compression and enhancement. In this paper, we create a large-scale textured mesh quality assessment database, namely SJTU-TMQA, which includes 21 reference meshes and 945 distorted samples. The meshes are rendered into processed video sequences and then conduct subjective experiments to obtain mean opinion scores (MOS). The diversity of content and accuracy of MOS has been shown to validate its heterogeneity and reliability. The impact of various types of distortion on human perception is demonstrated. 13 state-of-the-art objective metrics are evaluated on SJTU-TMQA. The results report the highest correlation of around 0.6, indicating the need for more effective objective metrics. The SJTU-TMQA is available at https://ccccby.github.io

cs.CV↗

arXiv2023

Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization

Two-dimensional single-slice abdominal computed tomography (CT) provides a detailed tissue map with high resolution allowing quantitative characterization of relationships between health conditions and aging. However, longitudinal analysis of body composition changes using these scans is difficult due to positional variation between slices acquired in different years, which leading to different organs/tissues captured. To address this issue, we propose C-SliceGen, which takes an arbitrary axial slice in the abdominal region as a condition and generates a pre-defined vertebral level slice by estimating structural changes in the latent space. Our experiments on 2608 volumetric CT data from two in-house datasets and 50 subjects from the 2015 Multi-Atlas Abdomen Labeling Challenge dataset (BTCV) Challenge demonstrate that our model can generate high-quality images that are realistic and similar. We further evaluate our method's capability to harmonize longitudinal positional variation on 1033 subjects from the Baltimore Longitudinal Study of Aging (BLSA) dataset, which contains longitudinal single abdominal slices, and confirmed that our method can harmonize the slice positional variance in terms of visceral fat area. This approach provides a promising direction for mapping slices from different vertebral levels to a target slice and reducing positional variance for single-slice longitudinal analysis. The source code is available at: https://github.com/MASILab/C-SliceGen.

eess.IV↗