arXiv subjects

Qibin Zhang

Publications and source records attributed to Qibin Zhang.

5 recordsLinked to original sources

arXiv2026

CIGTSurv: Clinical Information Guided Tri-modal Survival Prediction with Local Prototype Association and Global Feature Alignment

Multimodal learning has significantly advanced survival prediction by integrating pathology images with genomic data. However, clinical information, despite its critical role in reflecting a patient' s overall health, remains underutilized due to its discrete, sparse, and low-dimensional nature. Furthermore, the inherent heterogeneity across these modalities pose significant challenges in modeling cross-modal interactions. In this paper, we propose CIGTSurv, a Clinical Information Guided Tri-modal framework for Survival prediction. Specifically, we first design a holistic text template and use pretrained foundation models to transform clinical tabular data into high-dimensional tokenized embeddings. Using clinical information as an anchor, we then introduce a dual-level interaction mechanism: 1) a local prototype association (LPA) module based on cross-attention to explicitly learn token-level correspondences between different modalities, and 2) a global feature alignment (GFA) loss based on Maximum Mean Discrepancy (MMD) to implicitly enhance cross-modal distribution consistency. Extensive experiments on five TCGA cancer cohorts demonstrate that CIGTSurv achieves state-of-the-art (SOTA) survival prediction performance. Our source code is publicly available at https://github.com/Daijing-ai/CIGT-Surv.git.

cs.CV↗

arXiv2026

HGP-Mamba: Integrating Histology and Generated Protein Features for Mamba-based Multimodal Survival Risk Prediction

Recent advances in multimodal learning have significantly improved cancer survival risk prediction. However, the joint prognostic potential of protein markers and histopathology images remains underexplored, largely due to the high cost and limited availability of protein expression profiling. To address this challenge, we propose HGP-Mamba, a Mamba-based multimodal framework that efficiently integrates histological with generated protein features for survival risk prediction. Specifically, we introduce a protein feature extractor (PFE) that leverages pretrained foundation models to derive high-throughput protein embeddings directly from Whole Slide Images (WSIs), enabling data-efficient incorporation of molecular information. Together with histology embeddings that capture morphological patterns, we further introduce the Local Interaction-aware Mamba (LiAM) for fine-grained feature interaction and the Global Interaction-enhanced Mamba (GiEM) to promote holistic modality fusion at the slide level, thus capture complex cross-modal dependencies. Experiments on four public cancer datasets demonstrate that HGP-Mamba achieves state-of-the-art performance while maintaining superior computational efficiency compared with existing methods. Our source code is publicly available at https://github.com/Daijing-ai/HGP-Mamba.git.

cs.CV↗

arXiv2025

Multi-modal Knowledge Decomposition based Online Distillation for Biomarker Prediction in Breast Cancer Histopathology

Immunohistochemical (IHC) biomarker prediction benefits from multi-modal data fusion analysis. However, the simultaneous acquisition of multi-modal data, such as genomic and pathological information, is often challenging due to cost or technical limitations. To address this challenge, we propose an online distillation approach based on Multi-modal Knowledge Decomposition (MKD) to enhance IHC biomarker prediction in haematoxylin and eosin (H\&E) stained histopathology images. This method leverages paired genomic-pathology data during training while enabling inference using either pathology slides alone or both modalities. Two teacher and one student models are developed to extract modality-specific and modality-general features by minimizing the MKD loss. To maintain the internal structural relationships between samples, Similarity-preserving Knowledge Distillation (SKD) is applied. Additionally, Collaborative Learning for Online Distillation (CLOD) facilitates mutual learning between teacher and student models, encouraging diverse and complementary learning dynamics. Experiments on the TCGA-BRCA and in-house QHSU datasets demonstrate that our approach achieves superior performance in IHC biomarker prediction using uni-modal data. Our code is available at https://github.com/qiyuanzz/MICCAI2025_MKD.

cs.CV↗

arXiv2025

Impact of the WHO's 90-70-90 Strategy on HPV-Related Cervical Cancer Control: A Mathematical Model Evaluation in China

In August 2020, the World Health Assembly approved the Global Strategy to eliminate cervical cancer, marking the first time that numerous countries committed to eliminating a form of cancer. China introduced the HPV vaccine in 2016 and has made significant advancements in both prevention and treatment strategies. However, due to the relatively late introduction of the vaccine, the burden of cervical cancer in China continues to rise. In light of this, we develop a compartmental model to assess the impact of the WHO's 90-70-90 strategy, along with adult catch-up vaccination, on the control of HPV-induced cervical cancer in China. We analyze the basic properties of the model and provide proofs of the local and global asymptotic stability of the equilibrium points. Additionally, a sensitivity analysis is performed, and we use the MCMC algorithm to fit the number of new cervical cancer cases and deaths in China from 1990 to 2021. The estimated basic reproduction number before and after the introduction of the HPV vaccine in China is 1.5026 (95% CI: 1.4051-1.6002) and 1.0726 (95% CI: 0.9384-1.2067), respectively. The sensitivity analysis reveals that screening, as a non-pharmaceutical intervention, plays a crucial role in controlling the spread of the disease. We apply the 90-70-90 strategy to predict the future number of new cervical cancer cases and deaths in China. The results indicate that prioritizing the 70-90 target combination is the most cost-effective approach and can achieve the goal of zero new cervical cancer cases by 2061. Finally, an optimal control model is developed to explore the best implementation strategies for HPV vaccination and screening under various plausible scenarios.

q-bio.PE↗

arXiv2024

CIDER: Counterfactual-Invariant Diffusion-based GNN Explainer for Causal Subgraph Inference

Inferring causal links or subgraphs corresponding to a specific phenotype or label based solely on measured data is an important yet challenging task, which is also different from inferring causal nodes. While Graph Neural Network (GNN) Explainers have shown potential in subgraph identification, existing methods with GNN often offer associative rather than causal insights. This lack of transparency and explainability hinders our understanding of their results and also underlying mechanisms. To address this issue, we propose a novel method of causal link/subgraph inference, called CIDER: Counterfactual-Invariant Diffusion-based GNN ExplaineR, by implementing both counterfactual and diffusion implementations. In other words, it is a model-agnostic and task-agnostic framework for generating causal explanations based on a counterfactual-invariant and diffusion process, which provides not only causal subgraphs due to counterfactual implementation but reliable causal links due to the diffusion process. Specifically, CIDER is first formulated as an inference task that generatively provides the two distributions of one causal subgraph and another spurious subgraph. Then, to enhance the reliability, we further model the CIDER framework as a diffusion process. Thus, using the causal subgraph distribution, we can explicitly quantify the contribution of each subgraph to a phenotype/label in a counterfactual manner, representing each subgraph's causal strength. From a causality perspective, CIDER is an interventional causal method, different from traditional association studies or observational causal approaches, and can also reduce the effects of unobserved confounders. We evaluate CIDER on both synthetic and real-world datasets, which all demonstrate the superiority of CIDER over state-of-the-art methods.

cs.CE↗