arXiv subjects

Qingsong Wen

Publications and source records attributed to Qingsong Wen.

At least 109 records · Page 6Linked to original sources

arXiv2025

EEG-MedRAG: Enhancing EEG-based Clinical Decision-Making via Hierarchical Hypergraph Retrieval-Augmented Generation

With the widespread application of electroencephalography (EEG) in neuroscience and clinical practice, efficiently retrieving and semantically interpreting large-scale, multi-source, heterogeneous EEG data has become a pressing challenge. We propose EEG-MedRAG, a three-layer hypergraph-based retrieval-augmented generation framework that unifies EEG domain knowledge, individual patient cases, and a large-scale repository into a traversable n-ary relational hypergraph, enabling joint semantic-temporal retrieval and causal-chain diagnostic generation. Concurrently, we introduce the first cross-disease, cross-role EEG clinical QA benchmark, spanning seven disorders and five authentic clinical perspectives. This benchmark allows systematic evaluation of disease-agnostic generalization and role-aware contextual understanding. Experiments show that EEG-MedRAG significantly outperforms TimeRAG and HyperGraphRAG in answer accuracy and retrieval, highlighting its strong potential for real-world clinical decision support. Our data and code are publicly available at https://github.com/yi9206413-boop/EEG-MedRAG.

cs.CL↗

arXiv2025

Multi-Scale Finetuning for Encoder-based Time Series Foundation Models

Time series foundation models (TSFMs) demonstrate impressive zero-shot performance for time series forecasting. However, an important yet underexplored challenge is how to effectively finetune TSFMs on specific downstream tasks. While naive finetuning can yield performance gains, we argue that it falls short of fully leveraging TSFMs' capabilities, often resulting in overfitting and suboptimal performance. Given the diverse temporal patterns across sampling scales and the inherent multi-scale forecasting capabilities of TSFMs, we adopt a causal perspective to analyze finetuning process, through which we highlight the critical importance of explicitly modeling multiple scales and reveal the shortcomings of naive approaches. Focusing on encoder-based TSFMs, we propose Multiscale finetuning (MSFT), a simple yet general framework that explicitly integrates multi-scale modeling into the finetuning process. Experimental results on three different backbones (Moirai, Moment and Units) demonstrate that TSFMs finetuned with MSFT not only outperform naive and typical parameter efficient finetuning methods but also surpass state-of-the-art deep learning methods. Codes are available at https://github.com/zqiao11/MSFT.

cs.LG↗

arXiv2025

OneForecast: A Universal Framework for Global and Regional Weather Forecasting

Accurate weather forecasts are important for disaster prevention, agricultural planning, etc. Traditional numerical weather prediction (NWP) methods offer physically interpretable high-accuracy predictions but are computationally expensive and fail to fully leverage rapidly growing historical data. In recent years, deep learning models have made significant progress in weather forecasting, but challenges remain, such as balancing global and regional high-resolution forecasts, excessive smoothing in extreme event predictions, and insufficient dynamic system modeling. To address these issues, this paper proposes a global-regional nested weather forecasting framework (OneForecast) based on graph neural networks. By combining a dynamic system perspective with multi-grid theory, we construct a multi-scale graph structure and densify the target region to capture local high-frequency features. We introduce an adaptive messaging mechanism, using dynamic gating units to deeply integrate node and edge features for more accurate extreme event forecasting. For high-resolution regional forecasts, we propose a neural nested grid method to mitigate boundary information loss. Experimental results show that OneForecast performs excellently across global to regional scales and short-term to long-term forecasts, especially in extreme event predictions. Codes link https://github.com/YuanGao-YG/OneForecast.

cs.LG↗

arXiv2025

UniEDU: A Unified Language and Vision Assistant for Education Applications

Education materials for K-12 students often consist of multiple modalities, such as text and images, posing challenges for models to fully understand nuanced information in these materials. In this paper, we propose a unified language and vision assistant UniEDU designed for various educational applications, including knowledge recommendation, knowledge tracing, time cost prediction, and user answer prediction, all within a single model. Unlike conventional task-specific models, UniEDU offers a unified solution that excels across multiple educational tasks while maintaining strong generalization capabilities. Its adaptability makes it well-suited for real-world deployment in diverse learning environments. Furthermore, UniEDU is optimized for industry-scale deployment by significantly reducing computational overhead-achieving approximately a 300\% increase in efficiency-while maintaining competitive performance with minimal degradation compared to fully fine-tuned models. This work represents a significant step toward creating versatile AI systems tailored to the evolving demands of education.

cs.CL↗

arXiv2025

League: Leaderboard Generation on Demand

This paper introduces Leaderboard Auto Generation (LAG), a novel and well-organized framework for automatic generation of leaderboards on a given research topic in rapidly evolving fields like Artificial Intelligence (AI). Faced with a large number of AI papers updated daily, it becomes difficult for researchers to track every paper's proposed methods, experimental results, and settings, prompting the need for efficient automatic leaderboard construction. While large language models (LLMs) offer promise in automating this process, challenges such as multi-document summarization, leaderboard generation, and experiment fair comparison still remain under exploration. LAG solves these challenges through a systematic approach that involves the paper collection, experiment results extraction and integration, leaderboard generation, and quality evaluation. Our contributions include a comprehensive solution to the leaderboard construction problem, a reliable evaluation method, and experimental results showing the high quality of leaderboards.

cs.CL↗

arXiv2025

How Can Time Series Analysis Benefit From Multiple Modalities? A Survey and Outlook

Time series analysis (TSA) is a longstanding research topic in the data mining community and has wide real-world significance. Compared to "richer" modalities such as language and vision, which have recently experienced explosive development and are densely connected, the time-series modality remains relatively underexplored and isolated. We notice that many recent TSA works have formed a new research field, i.e., Multiple Modalities for TSA (MM4TSA). In general, these MM4TSA works follow a common motivation: how TSA can benefit from multiple modalities. This survey is the first to offer a comprehensive review and a detailed outlook for this emerging field. Specifically, we systematically discuss three benefits: (1) reusing foundation models of other modalities for efficient TSA, (2) multimodal extension for enhanced TSA, and (3) cross-modality interaction for advanced TSA. We further group the works by the introduced modality type, including text, images, audio, tables, and others, within each perspective. Finally, we identify the gaps with future opportunities, including the reused modalities selections, heterogeneous modality combinations, and unseen tasks generalizations, corresponding to the three benefits. We release an up-to-date GitHub repository that includes key papers and resources.

cs.LG↗

arXiv2025

Backdoor Attribution: Elucidating and Controlling Backdoor in Language Models

Fine-tuned Large Language Models (LLMs) are vulnerable to backdoor attacks through data poisoning, yet the internal mechanisms governing these attacks remain a black box. Previous research on interpretability for LLM safety tends to focus on alignment, jailbreak, and hallucination, but overlooks backdoor mechanisms, making it difficult to understand and fully eliminate the backdoor threat. In this paper, aiming to bridge this gap, we explore the interpretable mechanisms of LLM backdoors through Backdoor Attribution (BkdAttr), a tripartite causal analysis framework. We first introduce the Backdoor Probe that proves the existence of learnable backdoor features encoded within the representations. Building on this insight, we further develop Backdoor Attention Head Attribution (BAHA), efficiently pinpointing the specific attention heads responsible for processing these features. Our primary experiments reveals these heads are relatively sparse; ablating a minimal \textbf{$\sim$ 3%} of total heads is sufficient to reduce the Attack Success Rate (ASR) by \textbf{over 90%}. More importantly, we further employ these findings to construct the Backdoor Vector derived from these attributed heads as a master controller for the backdoor. Through only \textbf{1-point} intervention on \textbf{single} representation, the vector can either boost ASR up to \textbf{$\sim$ 100% ($\uparrow$)} on clean inputs, or completely neutralize backdoor, suppressing ASR down to \textbf{$\sim$ 0% ($\downarrow$)} on triggered inputs. In conclusion, our work pioneers the exploration of mechanistic interpretability in LLM backdoors, demonstrating a powerful method for backdoor control and revealing actionable insights for the community.

cs.CR↗

arXiv2025

VISION: Prompting Ocean Vertical Velocity Reconstruction from Incomplete Observations

Reconstructing subsurface ocean dynamics, such as vertical velocity fields, from incomplete surface observations poses a critical challenge in Earth science, a field long hampered by the lack of standardized, analysis-ready benchmarks. To systematically address this issue and catalyze research, we first build and release KD48, a high-resolution ocean dynamics benchmark derived from petascale simulations and curated with expert-driven denoising. Building on this benchmark, we introduce VISION, a novel reconstruction paradigm based on Dynamic Prompting designed to tackle the core problem of missing data in real-world observations. The essence of VISION lies in its ability to generate a visual prompt on-the-fly from any available subset of observations, which encodes both data availability and the ocean's physical state. More importantly, we design a State-conditioned Prompting module that efficiently injects this prompt into a universal backbone, endowed with geometry- and scale-aware operators, to guide its adaptive adjustment of computational strategies. This mechanism enables VISION to precisely handle the challenges posed by varying input combinations. Extensive experiments on the KD48 benchmark demonstrate that VISION not only substantially outperforms state-of-the-art models but also exhibits strong generalization under extreme data missing scenarios. By providing a high-quality benchmark and a robust model, our work establishes a solid infrastructure for ocean science research under data uncertainty. Our codes are available at: https://github.com/YuanGao-YG/VISION.

cs.LG↗

arXiv2025

DACAD: Domain Adaptation Contrastive Learning for Anomaly Detection in Multivariate Time Series

In time series anomaly detection (TSAD), the scarcity of labeled data poses a challenge to the development of accurate models. Unsupervised domain adaptation (UDA) offers a solution by leveraging labeled data from a related domain to detect anomalies in an unlabeled target domain. However, existing UDA methods assume consistent anomalous classes across domains. To address this limitation, we propose a novel Domain Adaptation Contrastive learning model for Anomaly Detection in multivariate time series (DACAD), combining UDA with contrastive learning. DACAD utilizes an anomaly injection mechanism that enhances generalization across unseen anomalous classes, improving adaptability and robustness. Additionally, our model employs supervised contrastive loss for the source domain and self-supervised contrastive triplet loss for the target domain, ensuring comprehensive feature representation learning and domain-invariant feature extraction. Finally, an effective Center-based Entropy Classifier (CEC) accurately learns normal boundaries in the source domain. Extensive evaluations on multiple real-world datasets and a synthetic dataset highlight DACAD's superior performance in transferring knowledge across domains and mitigating the challenge of limited labeled data in TSAD.

cs.LG↗

arXiv2025

Position: LLMs Can be Good Tutors in English Education

While recent efforts have begun integrating large language models (LLMs) into English education, they often rely on traditional approaches to learning tasks without fully embracing educational methodologies, thus lacking adaptability to language learning. To address this gap, we argue that LLMs have the potential to serve as effective tutors in English Education. Specifically, LLMs can play three critical roles: (1) as data enhancers, improving the creation of learning materials or serving as student simulations; (2) as task predictors, serving as learner assessment or optimizing learning pathway; and (3) as agents, enabling personalized and inclusive education. We encourage interdisciplinary research to explore these roles, fostering innovation while addressing challenges and risks, ultimately advancing English Education through the thoughtful integration of LLMs.

cs.CL↗

arXiv2025

Debiasing Multimodal Large Language Models via Penalization of Language Priors

In the realms of computer vision and natural language processing, Multimodal Large Language Models (MLLMs) have become indispensable tools, proficient in generating textual responses based on visual inputs. Despite their advancements, our investigation reveals a noteworthy bias: the generated content is often driven more by the inherent priors of the underlying Large Language Models (LLMs) than by the input image. Empirical experiments underscore the persistence of this bias, as MLLMs often provide confident answers even in the absence of relevant images or given incongruent visual inputs. To rectify these biases and redirect the model's focus toward visual information, we propose two simple, training-free strategies. First, for tasks such as classification or multi-choice question answering, we introduce a "Post-Hoc Debias" method using an affine calibration step to adjust the output distribution. This approach ensures uniform answer scores when the image is absent, acting as an effective regularization technique to alleviate the influence of LLM priors. For more intricate open-ended generation tasks, we extend this method to "Visual Debias Decoding", which mitigates bias by contrasting token log-probabilities conditioned on a correct image versus a meaningless one. Additionally, our investigation sheds light on the instability of MLLMs across various decoding configurations. Through systematic exploration of different settings, we achieve significant performance improvements--surpassing previously reported results--and raise concerns about the fairness of current evaluation practices. Comprehensive experiments substantiate the effectiveness of our proposed strategies in mitigating biases. These strategies not only prove beneficial in minimizing hallucinations but also contribute to the generation of more helpful and precise illustrations.

cs.CV↗

arXiv2025

From Entanglement to Alignment: Representation Space Decomposition for Unsupervised Time Series Domain Adaptation

Domain shift poses a fundamental challenge in time series analysis, where models trained on source domain often fail dramatically when applied in target domain with different yet similar distributions. While current unsupervised domain adaptation (UDA) methods attempt to align cross-domain feature distributions, they typically treat features as indivisible entities, ignoring their intrinsic compositions that govern domain adaptation. We introduce DARSD, a novel UDA framework with theoretical explainability that explicitly realizes UDA tasks from the perspective of representation space decomposition. Our core insight is that effective domain adaptation requires not just alignment, but principled disentanglement of transferable knowledge from mixed representations. DARSD consists of three synergistic components: (I) An adversarial learnable common invariant basis that projects original features into a domain-invariant subspace while preserving semantic content; (II) A prototypical pseudo-labeling mechanism that dynamically separates target features based on confidence, hindering error accumulation; (III) A hybrid contrastive optimization strategy that simultaneously enforces feature clustering and consistency while mitigating emerging distribution gaps. Comprehensive experiments conducted on four benchmarks (WISDM, HAR, HHAR, and MFD) demonstrate DARSD's superiority against 12 UDA algorithms, achieving optimal performance in 35 out of 53 scenarios and ranking first across all benchmarks.

cs.LG↗

arXiv2025

CaPulse: Detecting Anomalies by Tuning in to the Causal Rhythms of Time Series

Time series anomaly detection has garnered considerable attention across diverse domains. While existing methods often fail to capture the underlying mechanisms behind anomaly generation in time series data. In addition, time series anomaly detection often faces several data-related inherent challenges, i.e., label scarcity, data imbalance, and complex multi-periodicity. In this paper, we leverage causal tools and introduce a new causality-based framework, CaPulse, which tunes in to the underlying causal pulse of time series data to effectively detect anomalies. Concretely, we begin by building a structural causal model to decipher the generation processes behind anomalies. To tackle the challenges posed by the data, we propose Periodical Normalizing Flows with a novel mask mechanism and carefully designed periodical learners, creating a periodicity-aware, density-based anomaly detection approach. Extensive experiments on seven real-world datasets demonstrate that CaPulse consistently outperforms existing methods, achieving AUROC improvements of 3% to 17%, with enhanced interpretability.

cs.LG↗

arXiv2025

Time Evidence Fusion Network: Multi-source View in Long-Term Time Series Forecasting

In practical scenarios, time series forecasting necessitates not only accuracy but also efficiency. Consequently, the exploration of model architectures remains a perennially trending topic in research. To address these challenges, we propose a novel backbone architecture named Time Evidence Fusion Network (TEFN) from the perspective of information fusion. Specifically, we introduce the Basic Probability Assignment (BPA) Module based on evidence theory to capture the uncertainty of multivariate time series data from both channel and time dimensions. Additionally, we develop a novel multi-source information fusion method to effectively integrate the two distinct dimensions from BPA output, leading to improved forecasting accuracy. Lastly, we conduct extensive experiments to demonstrate that TEFN achieves performance comparable to state-of-the-art methods while maintaining significantly lower complexity and reduced training time. Also, our experiments show that TEFN exhibits high robustness, with minimal error fluctuations during hyperparameter selection. Furthermore, due to the fact that BPA is derived from fuzzy theory, TEFN offers a high degree of interpretability. Therefore, the proposed TEFN balances accuracy, efficiency, stability, and interpretability, making it a desirable solution for time series forecasting.

cs.LG↗

arXiv2025

A Survey on Post-training of Large Language Models

The emergence of Large Language Models (LLMs) has fundamentally transformed natural language processing, making them indispensable across domains ranging from conversational systems to scientific exploration. However, their pre-trained architectures often reveal limitations in specialized contexts, including restricted reasoning capacities, ethical uncertainties, and suboptimal domain-specific performance. These challenges necessitate advanced post-training language models (PoLMs) to address these shortcomings, such as OpenAI-o1/o3 and DeepSeek-R1 (collectively known as Large Reasoning Models, or LRMs). This paper presents the first comprehensive survey of PoLMs, systematically tracing their evolution across five core paradigms: Fine-tuning, which enhances task-specific accuracy; Alignment, which ensures ethical coherence and alignment with human preferences; Reasoning, which advances multi-step inference despite challenges in reward design; Efficiency, which optimizes resource utilization amidst increasing complexity; Integration and Adaptation, which extend capabilities across diverse modalities while addressing coherence issues. Charting progress from ChatGPT's alignment strategies to DeepSeek-R1's innovative reasoning advancements, we illustrate how PoLMs leverage datasets to mitigate biases, deepen reasoning capabilities, and enhance domain adaptability. Our contributions include a pioneering synthesis of PoLM evolution, a structured taxonomy categorizing techniques and datasets, and a strategic agenda emphasizing the role of LRMs in improving reasoning proficiency and domain flexibility. As the first survey of its scope, this work consolidates recent PoLM advancements and establishes a rigorous intellectual framework for future research, fostering the development of LLMs that excel in precision, ethical robustness, and versatility across scientific and societal applications.

cs.CL↗

arXiv2025

Brain Foundation Models: A Survey on Advancements in Neural Signal Processing and Brain Discovery

Brain foundation models (BFMs) have emerged as a transformative paradigm in computational neuroscience, offering a revolutionary framework for processing diverse neural signals across different brain-related tasks. These models leverage large-scale pre-training techniques, allowing them to generalize effectively across multiple scenarios, tasks, and modalities, thus overcoming the traditional limitations faced by conventional artificial intelligence (AI) approaches in understanding complex brain data. By tapping into the power of pretrained models, BFMs provide a means to process neural data in a more unified manner, enabling advanced analysis and discovery in the field of neuroscience. In this survey, we define BFMs for the first time, providing a clear and concise framework for constructing and utilizing these models in various applications. We also examine the key principles and methodologies for developing these models, shedding light on how they transform the landscape of neural signal processing. This survey presents a comprehensive review of the latest advancements in BFMs, covering the most recent methodological innovations, novel views of application areas, and challenges in the field. Notably, we highlight the future directions and key challenges that need to be addressed to fully realize the potential of BFMs. These challenges include improving the quality of brain data, optimizing model architecture for better generalization, increasing training efficiency, and enhancing the interpretability and robustness of BFMs in real-world applications.

cs.LG↗

arXiv2025

PyPOTS: A Python Toolkit for Machine Learning on Partially-Observed Time Series

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks: imputation, forecasting, anomaly detection, classification, and clustering. The included models represent a diverse set of methodological paradigms, offering a unified and well-documented interface suitable for both academic research and practical applications. With robustness and scalability in its design philosophy, best practices of software construction, for example, unit testing, continuous integration and continuous delivery, code coverage, maintainability evaluation, interactive tutorials, and parallelization, are carried out as principles during the development of PyPOTS. The toolbox is available on PyPI, Anaconda, and Docker. PyPOTS is open source and publicly available on GitHub https://github.com/WenjieDu/PyPOTS.

cs.LG↗

arXiv2025

From Images to Signals: Are Large Vision Models Useful for Time Series Analysis?

Transformer-based models have gained increasing attention in time series research, driving interest in Large Language Models (LLMs) and foundation models for time series analysis. As the field moves toward multi-modality, Large Vision Models (LVMs) are emerging as a promising direction. In the past, the effectiveness of Transformer and LLMs in time series has been debated. When it comes to LVMs, a similar question arises: are LVMs truely useful for time series analysis? To address it, we design and conduct the first principled study involving 4 LVMs, 8 imaging methods, 18 datasets and 26 baselines across both high-level (classification) and low-level (forecasting) tasks, with extensive ablation analysis. Our findings indicate LVMs are indeed useful for time series classification but face challenges in forecasting. Although effective, the contemporary best LVM forecasters are limited to specific types of LVMs and imaging methods, exhibit a bias toward forecasting periods, and have limited ability to utilize long look-back windows. We hope our findings could serve as a cornerstone for future research on LVM- and multimodal-based solutions to different time series tasks.

cs.LG↗