arXiv subjects

Qitian Wu

Publications and source records attributed to Qitian Wu.

At least 19 recordsLinked to original sources

arXiv2026

Resolving Action Bottleneck: Agentic Reinforcement Learning Informed by Token-Level Energy

Agentic reinforcement learning trains large language models using multi-turn trajectories that interleave long reasoning traces with short environment-facing actions. Common policy-gradient methods, such as PPO and GRPO, treat each token in a trajectory equally, leading to uniform credit assignment. In this paper, we critically demonstrate that such uniform credit assignment largely misallocates token-level training signals. From an energy-based modeling perspective, we show that token-level training signals, quantified by their correlations with reward variance of different rollouts sampled from a given prompt, concentrate sharply on action tokens rather than reasoning tokens, even though action tokens account for only a small fraction of the trajectory. We refer to this phenomenon as the Action Bottleneck. Motivated by this observation, we propose an embarrassingly simple token reweighting approach, ActFocus, that downweights gradients on reasoning tokens, along with an additional energy-based redistribution mechanism that further increases the weights on action tokens with higher uncertainty. Across four environments and different model sizes, ActFocus consistently outperforms PPO and GRPO, yielding final-step gains of up to 65.2 and 63.7 percentage points, respectively, without any additional runtime or memory cost.

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arXiv2025

PAINET: A Principled Efficient Transformer for 3D Dynamics Modeling

Modeling 3D dynamics is a fundamental problem in multi-body systems across scientific and engineering domains and has important practical implications in object trajectory prediction and simulation. While recent GNN-based approaches have achieved strong performance by enforcing geometric symmetries, encoding high-order features or incorporating neural-ODE mechanics, they typically depend on explicitly observed structures and inherently fail to capture the unobserved interactions that are crucial to complex physical behaviors and dynamics mechanism. In this paper, we propose PAINET, a principled SE(3)-equivariant transformer for learning all-pair interactions in multi-body systems. The model comprises: (1) a novel physics-inspired attention network derived from the minimization trajectory of an energy function, and (2) a parallel decoder that preserves equivariance while enabling efficient inference. Empirical results on diverse real-world benchmarks, including human motion capture, molecular dynamics, and large-scale protein simulations, show that PAINET consistently outperforms recently proposed models, yielding 4.7% to 41.5% error reductions in 3D dynamics prediction with comparable computation costs in terms of time and memory. Our codes, baseline models and datasets are available at https://github.com/Icarus1411/PAINET.

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arXiv2025

Can Molecular Foundation Models Know What They Don't Know? A Simple Remedy with Preference Optimization

Molecular foundation models are rapidly advancing scientific discovery, but their unreliability on out-of-distribution (OOD) samples severely limits their application in high-stakes domains such as drug discovery and protein design. A critical failure mode is chemical hallucination, where models make high-confidence yet entirely incorrect predictions for unknown molecules. To address this challenge, we introduce Molecular Preference-Aligned Instance Ranking (Mole-PAIR), a simple, plug-and-play module that can be flexibly integrated with existing foundation models to improve their reliability on OOD data through cost-effective post-training. Specifically, our method formulates the OOD detection problem as a preference optimization over the estimated OOD affinity between in-distribution (ID) and OOD samples, achieving this goal through a pairwise learning objective. We show that this objective essentially optimizes AUROC, which measures how consistently ID and OOD samples are ranked by the model. Extensive experiments across five real-world molecular datasets demonstrate that our approach significantly improves the OOD detection capabilities of existing molecular foundation models, achieving up to 45.8%, 43.9%, and 24.3% improvements in AUROC under distribution shifts of size, scaffold, and assay, respectively.

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arXiv2025

Transformers from Diffusion: A Unified Framework for Neural Message Passing

Learning representations for structured data with certain geometries (e.g., observed or unobserved) is a fundamental challenge, wherein message passing neural networks (MPNNs) have become a de facto class of model solutions. In this paper, inspired by physical systems, we propose an energy-constrained diffusion model, which integrates the inductive bias of diffusion on manifolds with layer-wise constraints of energy minimization. We identify that the diffusion operators have a one-to-one correspondence with the energy functions implicitly descended by the diffusion process, and the finite-difference iteration for solving the energy-constrained diffusion system induces the propagation layers of various types of MPNNs operating on observed or latent structures. This leads to a unified mathematical framework for common neural architectures whose computational flows can be cast as message passing (or its special case), including MLPs, GNNs, and Transformers. Building on these insights, we devise a new class of neural message passing models, dubbed diffusion-inspired Transformers (DIFFormer), whose global attention layers are derived from the principled energy-constrained diffusion framework. Across diverse datasets ranging from real-world networks to images, texts, and physical particles, we demonstrate that the new model achieves promising performance in scenarios where the data structures are observed (as a graph), partially observed, or entirely unobserved.

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arXiv2025

Supercharging Graph Transformers with Advective Diffusion

The capability of generalization is a cornerstone for the success of modern learning systems. For non-Euclidean data, e.g., graphs, that particularly involves topological structures, one important aspect neglected by prior studies is how machine learning models generalize under topological shifts. This paper proposes Advective Diffusion Transformer (AdvDIFFormer), a physics-inspired graph Transformer model designed to address this challenge. The model is derived from advective diffusion equations which describe a class of continuous message passing process with observed and latent topological structures. We show that AdvDIFFormer has provable capability for controlling generalization error with topological shifts, which in contrast cannot be guaranteed by graph diffusion models, i.e., the generalized formulation of common graph neural networks in continuous space. Empirically, the model demonstrates superiority in various predictive tasks across information networks, molecular screening and protein interactions.

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arXiv2025

DiffPuter: Empowering Diffusion Models for Missing Data Imputation

Generative models play an important role in missing data imputation in that they aim to learn the joint distribution of full data. However, applying advanced deep generative models (such as Diffusion models) to missing data imputation is challenging due to 1) the inherent incompleteness of the training data and 2) the difficulty in performing conditional inference from unconditional generative models. To deal with these challenges, this paper introduces DiffPuter, a tailored diffusion model combined with the Expectation-Maximization (EM) algorithm for missing data imputation. DiffPuter iteratively trains a diffusion model to learn the joint distribution of missing and observed data and performs an accurate conditional sampling to update the missing values using a tailored reversed sampling strategy. Our theoretical analysis shows that DiffPuter's training step corresponds to the maximum likelihood estimation of data density (M-step), and its sampling step represents the Expected A Posteriori estimation of missing values (E-step). Extensive experiments across ten diverse datasets and comparisons with 17 different imputation methods demonstrate DiffPuter's superior performance. Notably, DiffPuter achieves an average improvement of 6.94% in MAE and 4.78% in RMSE compared to the most competitive existing method.

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arXiv2025

SLMRec: Distilling Large Language Models into Small for Sequential Recommendation

Sequential Recommendation (SR) task involves predicting the next item a user is likely to interact with, given their past interactions. The SR models examine the sequence of a user's actions to discern more complex behavioral patterns and temporal dynamics. Recent research demonstrates the great impact of LLMs on sequential recommendation systems, either viewing sequential recommendation as language modeling or serving as the backbone for user representation. Although these methods deliver outstanding performance, there is scant evidence of the necessity of a large language model and how large the language model is needed, especially in the sequential recommendation scene. Meanwhile, due to the huge size of LLMs, it is inefficient and impractical to apply a LLM-based model in real-world platforms that often need to process billions of traffic logs daily. In this paper, we explore the influence of LLMs' depth by conducting extensive experiments on large-scale industry datasets. Surprisingly, our motivational experiments reveal that most intermediate layers of LLMs are redundant, indicating that pruning the remaining layers can still maintain strong performance. Motivated by this insight, we empower small language models for SR, namely SLMRec, which adopt a simple yet effective knowledge distillation method. Moreover, SLMRec is orthogonal to other post-training efficiency techniques, such as quantization and pruning, so that they can be leveraged in combination. Comprehensive experimental results illustrate that the proposed SLMRec model attains the best performance using only 13% of the parameters found in LLM-based recommendation models while simultaneously achieving up to 6.6x and 8.0x speedups in training and inference time costs, respectively. Besides, we provide a theoretical justification for why small language models can perform comparably to large language models in SR.

cs.IR↗

arXiv2024

Diffusion-nested Auto-Regressive Synthesis of Heterogeneous Tabular Data

Autoregressive models are predominant in natural language generation, while their application in tabular data remains underexplored. We posit that this can be attributed to two factors: 1) tabular data contains heterogeneous data type, while the autoregressive model is primarily designed to model discrete-valued data; 2) tabular data is column permutation-invariant, requiring a generation model to generate columns in arbitrary order. This paper proposes a Diffusion-nested Autoregressive model (TabDAR) to address these issues. To enable autoregressive methods for continuous columns, TabDAR employs a diffusion model to parameterize the conditional distribution of continuous features. To ensure arbitrary generation order, TabDAR resorts to masked transformers with bi-directional attention, which simulate various permutations of column order, hence enabling it to learn the conditional distribution of a target column given an arbitrary combination of other columns. These designs enable TabDAR to not only freely handle heterogeneous tabular data but also support convenient and flexible unconditional/conditional sampling. We conduct extensive experiments on ten datasets with distinct properties, and the proposed TabDAR outperforms previous state-of-the-art methods by 18% to 45% on eight metrics across three distinct aspects.

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arXiv2024

SGFormer: Single-Layer Graph Transformers with Approximation-Free Linear Complexity

Learning representations on large graphs is a long-standing challenge due to the inter-dependence nature. Transformers recently have shown promising performance on small graphs thanks to its global attention for capturing all-pair interactions beyond observed structures. Existing approaches tend to inherit the spirit of Transformers in language and vision tasks, and embrace complicated architectures by stacking deep attention-based propagation layers. In this paper, we attempt to evaluate the necessity of adopting multi-layer attentions in Transformers on graphs, which considerably restricts the efficiency. Specifically, we analyze a generic hybrid propagation layer, comprised of all-pair attention and graph-based propagation, and show that multi-layer propagation can be reduced to one-layer propagation, with the same capability for representation learning. It suggests a new technical path for building powerful and efficient Transformers on graphs, particularly through simplifying model architectures without sacrificing expressiveness. As exemplified by this work, we propose a Simplified Single-layer Graph Transformers (SGFormer), whose main component is a single-layer global attention that scales linearly w.r.t. graph sizes and requires none of any approximation for accommodating all-pair interactions. Empirically, SGFormer successfully scales to the web-scale graph ogbn-papers100M, yielding orders-of-magnitude inference acceleration over peer Transformers on medium-sized graphs, and demonstrates competitiveness with limited labeled data.

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arXiv2024

Handling Distribution Shifts on Graphs: An Invariance Perspective

There is increasing evidence suggesting neural networks' sensitivity to distribution shifts, so that research on out-of-distribution (OOD) generalization comes into the spotlight. Nonetheless, current endeavors mostly focus on Euclidean data, and its formulation for graph-structured data is not clear and remains under-explored, given two-fold fundamental challenges: 1) the inter-connection among nodes in one graph, which induces non-IID generation of data points even under the same environment, and 2) the structural information in the input graph, which is also informative for prediction. In this paper, we formulate the OOD problem on graphs and develop a new invariant learning approach, Explore-to-Extrapolate Risk Minimization (EERM), that facilitates graph neural networks to leverage invariance principles for prediction. EERM resorts to multiple context explorers (specified as graph structure editers in our case) that are adversarially trained to maximize the variance of risks from multiple virtual environments. Such a design enables the model to extrapolate from a single observed environment which is the common case for node-level prediction. We prove the validity of our method by theoretically showing its guarantee of a valid OOD solution and further demonstrate its power on various real-world datasets for handling distribution shifts from artificial spurious features, cross-domain transfers and dynamic graph evolution.

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arXiv2024

SGFormer: Simplifying and Empowering Transformers for Large-Graph Representations

Learning representations on large-sized graphs is a long-standing challenge due to the inter-dependence nature involved in massive data points. Transformers, as an emerging class of foundation encoders for graph-structured data, have shown promising performance on small graphs due to its global attention capable of capturing all-pair influence beyond neighboring nodes. Even so, existing approaches tend to inherit the spirit of Transformers in language and vision tasks, and embrace complicated models by stacking deep multi-head attentions. In this paper, we critically demonstrate that even using a one-layer attention can bring up surprisingly competitive performance across node property prediction benchmarks where node numbers range from thousand-level to billion-level. This encourages us to rethink the design philosophy for Transformers on large graphs, where the global attention is a computation overhead hindering the scalability. We frame the proposed scheme as Simplified Graph Transformers (SGFormer), which is empowered by a simple attention model that can efficiently propagate information among arbitrary nodes in one layer. SGFormer requires none of positional encodings, feature/graph pre-processing or augmented loss. Empirically, SGFormer successfully scales to the web-scale graph ogbn-papers100M and yields up to 141x inference acceleration over SOTA Transformers on medium-sized graphs. Beyond current results, we believe the proposed methodology alone enlightens a new technical path of independent interest for building Transformers on large graphs.

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arXiv2024

Graph Out-of-Distribution Generalization via Causal Intervention

Out-of-distribution (OOD) generalization has gained increasing attentions for learning on graphs, as graph neural networks (GNNs) often exhibit performance degradation with distribution shifts. The challenge is that distribution shifts on graphs involve intricate interconnections between nodes, and the environment labels are often absent in data. In this paper, we adopt a bottom-up data-generative perspective and reveal a key observation through causal analysis: the crux of GNNs' failure in OOD generalization lies in the latent confounding bias from the environment. The latter misguides the model to leverage environment-sensitive correlations between ego-graph features and target nodes' labels, resulting in undesirable generalization on new unseen nodes. Built upon this analysis, we introduce a conceptually simple yet principled approach for training robust GNNs under node-level distribution shifts, without prior knowledge of environment labels. Our method resorts to a new learning objective derived from causal inference that coordinates an environment estimator and a mixture-of-expert GNN predictor. The new approach can counteract the confounding bias in training data and facilitate learning generalizable predictive relations. Extensive experiment demonstrates that our model can effectively enhance generalization with various types of distribution shifts and yield up to 27.4\% accuracy improvement over state-of-the-arts on graph OOD generalization benchmarks. Source codes are available at https://github.com/fannie1208/CaNet.

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arXiv2024

GeoMix: Towards Geometry-Aware Data Augmentation

Mixup has shown considerable success in mitigating the challenges posed by limited labeled data in image classification. By synthesizing samples through the interpolation of features and labels, Mixup effectively addresses the issue of data scarcity. However, it has rarely been explored in graph learning tasks due to the irregularity and connectivity of graph data. Specifically, in node classification tasks, Mixup presents a challenge in creating connections for synthetic data. In this paper, we propose Geometric Mixup (GeoMix), a simple and interpretable Mixup approach leveraging in-place graph editing. It effectively utilizes geometry information to interpolate features and labels with those from the nearby neighborhood, generating synthetic nodes and establishing connections for them. We conduct theoretical analysis to elucidate the rationale behind employing geometry information for node Mixup, emphasizing the significance of locality enhancement-a critical aspect of our method's design. Extensive experiments demonstrate that our lightweight Geometric Mixup achieves state-of-the-art results on a wide variety of standard datasets with limited labeled data. Furthermore, it significantly improves the generalization capability of underlying GNNs across various challenging out-of-distribution generalization tasks. Our code is available at https://github.com/WtaoZhao/geomix.

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arXiv2024

How Graph Neural Networks Learn: Lessons from Training Dynamics

A long-standing goal in deep learning has been to characterize the learning behavior of black-box models in a more interpretable manner. For graph neural networks (GNNs), considerable advances have been made in formalizing what functions they can represent, but whether GNNs will learn desired functions during the optimization process remains less clear. To fill this gap, we study their training dynamics in function space. In particular, we find that the gradient descent optimization of GNNs implicitly leverages the graph structure to update the learned function, as can be quantified by a phenomenon which we call \emph{kernel-graph alignment}. We provide theoretical explanations for the emergence of this phenomenon in the overparameterized regime and empirically validate it on real-world GNNs. This finding offers new interpretable insights into when and why the learned GNN functions generalize, highlighting their limitations in heterophilic graphs. Practically, we propose a parameter-free algorithm that directly uses a sparse matrix (i.e. graph adjacency) to update the learned function. We demonstrate that this embarrassingly simple approach can be as effective as GNNs while being orders-of-magnitude faster.

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arXiv2024

Learning Divergence Fields for Shift-Robust Graph Representations

Real-world data generation often involves certain geometries (e.g., graphs) that induce instance-level interdependence. This characteristic makes the generalization of learning models more difficult due to the intricate interdependent patterns that impact data-generative distributions and can vary from training to testing. In this work, we propose a geometric diffusion model with learnable divergence fields for the challenging generalization problem with interdependent data. We generalize the diffusion equation with stochastic diffusivity at each time step, which aims to capture the multi-faceted information flows among interdependent data. Furthermore, we derive a new learning objective through causal inference, which can guide the model to learn generalizable patterns of interdependence that are insensitive across domains. Regarding practical implementation, we introduce three model instantiations that can be considered as the generalized versions of GCN, GAT, and Transformers, respectively, which possess advanced robustness against distribution shifts. We demonstrate their promising efficacy for out-of-distribution generalization on diverse real-world datasets.

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arXiv2024

Rethinking Cross-Domain Sequential Recommendation under Open-World Assumptions

Cross-Domain Sequential Recommendation (CDSR) methods aim to tackle the data sparsity and cold-start problems present in Single-Domain Sequential Recommendation (SDSR). Existing CDSR works design their elaborate structures relying on overlapping users to propagate the cross-domain information. However, current CDSR methods make closed-world assumptions, assuming fully overlapping users across multiple domains and that the data distribution remains unchanged from the training environment to the test environment. As a result, these methods typically result in lower performance on online real-world platforms due to the data distribution shifts. To address these challenges under open-world assumptions, we design an \textbf{A}daptive \textbf{M}ulti-\textbf{I}nterest \textbf{D}ebiasing framework for cross-domain sequential recommendation (\textbf{AMID}), which consists of a multi-interest information module (\textbf{MIM}) and a doubly robust estimator (\textbf{DRE}). Our framework is adaptive for open-world environments and can improve the model of most off-the-shelf single-domain sequential backbone models for CDSR. Our MIM establishes interest groups that consider both overlapping and non-overlapping users, allowing us to effectively explore user intent and explicit interest. To alleviate biases across multiple domains, we developed the DRE for the CDSR methods. We also provide a theoretical analysis that demonstrates the superiority of our proposed estimator in terms of bias and tail bound, compared to the IPS estimator used in previous work.

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arXiv2023

Unleashing the Power of Graph Data Augmentation on Covariate Distribution Shift

The issue of distribution shifts is emerging as a critical concern in graph representation learning. From the perspective of invariant learning and stable learning, a recently well-established paradigm for out-of-distribution generalization, stable features of the graph are assumed to causally determine labels, while environmental features tend to be unstable and can lead to the two primary types of distribution shifts. The correlation shift is often caused by the spurious correlation between environmental features and labels that differs between the training and test data; the covariate shift often stems from the presence of new environmental features in test data. However, most strategies, such as invariant learning or graph augmentation, typically struggle with limited training environments or perturbed stable features, thus exposing limitations in handling the problem of covariate shift. To address this challenge, we propose a simple-yet-effective data augmentation strategy, Adversarial Invariant Augmentation (AIA), to handle the covariate shift on graphs. Specifically, given the training data, AIA aims to extrapolate and generate new environments, while concurrently preserving the original stable features during the augmentation process. Such a design equips the graph classification model with an enhanced capability to identify stable features in new environments, thereby effectively tackling the covariate shift in data. Extensive experiments with in-depth empirical analysis demonstrate the superiority of our approach. The implementation codes are publicly available at https://github.com/yongduosui/AIA.

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arXiv2023

TDeLTA: A Light-weight and Robust Table Detection Method based on Learning Text Arrangement

The diversity of tables makes table detection a great challenge, leading to existing models becoming more tedious and complex. Despite achieving high performance, they often overfit to the table style in training set, and suffer from significant performance degradation when encountering out-of-distribution tables in other domains. To tackle this problem, we start from the essence of the table, which is a set of text arranged in rows and columns. Based on this, we propose a novel, light-weighted and robust Table Detection method based on Learning Text Arrangement, namely TDeLTA. TDeLTA takes the text blocks as input, and then models the arrangement of them with a sequential encoder and an attention module. To locate the tables precisely, we design a text-classification task, classifying the text blocks into 4 categories according to their semantic roles in the tables. Experiments are conducted on both the text blocks parsed from PDF and extracted by open-source OCR tools, respectively. Compared to several state-of-the-art methods, TDeLTA achieves competitive results with only 3.1M model parameters on the large-scale public datasets. Moreover, when faced with the cross-domain data under the 0-shot setting, TDeLTA outperforms baselines by a large margin of nearly 7%, which shows the strong robustness and transferability of the proposed model.

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