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Quan M. Nguyen

Publications and source records attributed to Quan M. Nguyen.

18 recordsLinked to original sources

Autonomous Agent-Orchestrated Digital Twins (AADT): Leveraging the OpenClaw Framework for State Synchronization in Rare Genetic Disorders

Background: Medical Digital Twins (MDTs) are computational representations of individual patients that integrate clinical, genomic, and physiological data to support diagnosis, treatment planning, and outcome prediction. However, most MDTs remain static or passively updated, creating a critical synchronization gap, especially in rare genetic disorders where phenotypes, genomic interpretations, and care guidelines evolve over time. Methods: We propose an agent-orchestrated digital twin framework using OpenClaw's proactive "heartbeat" mechanism and modular Agent Skills. This Autonomous Agent-orchestrated Digital Twin (AADT) system continuously monitors local and external data streams (e.g., patient-reported phenotypes and updates in variant classification databases) and executes automated workflows for data ingestion, normalization, state updates, and trigger-based analysis. Results: A prototype implementation demonstrates that agent orchestration can continuously synchronize MDT states with both longitudinal phenotype updates and evolving genomic knowledge. In rare disease settings, this enables earlier diagnosis and more accurate modeling of disease progression. We present two case studies, including variant reinterpretation and longitudinal phenotype tracking, highlighting how AADTs support timely, auditable updates for both research and clinical care. Conclusion: The AADT framework addresses the key bottleneck of real-time synchronization in MDTs, enabling scalable and continuously updated patient models. We also discuss data security considerations and mitigation strategies through human-in-the-loop system design.

q-bio.QM

A Finite Difference Scheme for (2+1)D Cubic-Quintic Nonlinear Schrödinger Equations with Nonlinear Damping

Solitons of the purely cubic nonlinear Schrödinger equation in a space dimension of $n \geq 2$ suffer critical and supercritical collapses. These solitons can be stabilized in a cubic-quintic nonlinear medium. In this paper, we analyze the Crank-Nicolson finite difference scheme for the (2+1)D cubic-quintic nonlinear Schrödinger equation with cubic damping. We show that both the discrete solution, in the discrete $L^2$-norm, and discrete energy are bounded. By using appropriate settings and estimations, the existence and the uniqueness of the numerical solution are proved. In addition, the error estimations are established in terms of second order for both space and time in discrete $L^2$-norm and $H^1$-norm. Numerical simulations for the (2+1)D cubic-quintic nonlinear Schrödinger equation with cubic damping are conducted to validate the convergence.

math.NA

Analysis of a Crank-Nicolson finite difference scheme for (2+1)D perturbed nonlinear Schrödinger equations with saturable nonlinearity

We analyze a Crank-Nicolson finite difference discretization for the perturbed (2+1)D nonlinear Schrödinger equation with saturable nonlinearity and a perturbation of cubic loss. We show the boundedness, the existence and uniqueness of a numerical solution. We establish the error bound to prove the convergence of the numerical solution. Moreover, we find that the convergence rate is at the second order in both time step and spatial mesh size under a mild assumption. The numerical scheme is validated by the extensive simulations of the (2+1)D saturable nonlinear Schrödinger model with cubic loss. The simulations for travelling solitons are implemented by using an accelerated imaginary-time evolution scheme and the Crank-Nicolson finite difference method.

math.NA

Collision-induced amplitude dynamics of fast 2D solitons in saturable nonlinear media with weak nonlinear loss

We study the amplitude dynamics of two-dimensional (2D) solitons in a fast collision described by the coupled nonlinear Schrödinger equations with a saturable nonlinearity and weak nonlinear loss. We extend the perturbative technique for calculating the collision-induced dynamics of two one-dimensional (1D) solitons to derive the theoretical expression for the collision-induced amplitude dynamics in a fast collision of two 2D solitons. Our perturbative approach is based on two major steps. The first step is the standard adiabatic perturbation for the calculations on the energy balance of perturbed solitons and the second step, which is the crucial one, is for the analysis of the collision-induced change in the envelope of the perturbed 2D soliton. Furthermore, we also present the dependence of the collision-induced amplitude shift on the angle of the two 2D colliding-solitons. In addition, we show that the current perturbative technique can be simply applied to study the collision-induced amplitude shift in a fast collision of two perturbed 1D solitons. Our analytic calculations are confirmed by numerical simulations with the corresponding coupled nonlinear Schrödinger equations in the presence of the cubic loss and in the presence of the quintic loss.

nlin.PS

Elementary Methods for Infinite Resistive Networks with Complex Topologies

Finding the equivalent resistance of an infinite ladder circuit is a classical problem in physics. We expand this well-known challenge to new classes of network topologies, in which the unit cells are much more entangled together. The exact analytical results there can still be obtained with elementary methods. These topology classes will add layers of complexity and much more diversity to a very popular kind of physics puzzles for teachers and students.

physics.class-ph

Collision-induced amplitude dynamics of pulses in linear waveguides with the generic nonlinear loss

We study the effects of the generic weak nonlinear loss on fast two-pulse interactions in linear waveguides. The colliding pulses are described by a system of coupled Schrödinger equations with a purely nonlinear coupling in the presence of the weak $(2m+1)-$order of nonlinear loss, for any $m \geq 1$. We derive the analytic expression for the collision-induced amplitude shift in a fast two-pulse interaction. The analytic calculations are based on a generalization of the perturbation technique for calculating the effects of weak perturbations on fast collisions between solitons of the nonlinear Schrödinger equation. The theoretical predictions are confirmed by the numerical simulations with the full propagation model of coupled Schrödinger equations.

nlin.PS

Fast two-beam collisions in a linear optical medium with weak cubic loss in spatial dimension higher than 1

We study the dynamics of fast two-beam collisions in linear optical media with weak cubic loss in spatial dimension higher than 1. For this purpose, we extend the perturbation theory that was developed for analyzing two-pulse collisions in spatial dimension 1 to spatial dimension 2. We use the extended two-dimensional version of the perturbation theory to show that the collision leads to a change in the beam shapes in the direction transverse to the relative velocity vector. Furthermore, we show that in the important case of a separable initial condition for both beams, the longitudinal part in the expression for the amplitude shift is universal, while the transverse part is not universal. Additionally, we demonstrate that the same behavior holds for collisions between pulsed optical beams in spatial dimension 3. We check these predictions of the perturbation theory along with other predictions concerning the effects on the collision of partial beam overlap and anisotropy in the initial condition by extensive numerical simulations with the weakly perturbed linear propagation model in spatial dimensions 2 and 3. The agreement between the perturbation theory and the simulations is very good. Therefore, our study significantly extends and generalizes the results of previous works, which were limited to spatial dimension 1.

physics.optics

Infinite AC Ladder with a "Twist"

The infinite AC ladder network can exhibit unexpected behavior. Entangling the topology brings even more surprises, found by direct numerical investigation. We consider a simple modification of the ladder topology and explain the numerical result for the complex impedance, using linear algebra. The infinity limit of the network's size corresponds to keeping only the eigenvectors of the transmission matrix with the largest eigenvalues, which can be viewed as the most dominant modes of electrical information that propagate through the network.

physics.ed-ph

Frequency shifting for solitons based on transformations on the Fourier domain and applications

We develop the theoretical procedures for shifting the frequency of a single soliton and of a sequence of solitons of the nonlinear Schrödinger equation. The procedures are based on simple transformations of the soliton pattern in the Fourier domain and on the shape-preserving property of solitons. These theoretical frequency shifting procedures are verified by numerical simulations with the nonlinear Schrödinger equation using the split-step Fourier method. In order to demonstrate the use of the frequency shifting procedures, two important applications are presented: (1) stabilization of the propagation of solitons in waveguides with frequency dependent linear gain-loss; (2) induction of repeated soliton collisions in waveguides with weak cubic loss. The results of numerical simulations with the nonlinear Schrödinger model are in very good agreement with the theoretical predictions.

nlin.PS

Universality of the amplitude shift in fast two-pulse collisions in weakly perturbed linear physical systems

We demonstrate that the amplitude shifts in fast two-pulse collisions in perturbed linear physical systems with weak nonlinear dissipation exhibit universal soliton-like behavior. The behavior is demonstrated for linear optical waveguides with weak cubic loss and for systems described by linear diffusion-advection models with weak quadratic loss. We show that in both systems, the expressions for the collision-induced amplitude shifts due to the nonlinear loss have the same form as the expression obtained for a fast collision between two solitons of the nonlinear Schrödinger equation in the presence of weak cubic loss. Furthermore, we show that the expressions for the amplitude shifts are universal in the sense that they are independent of the exact details of the initial pulse shapes. We demonstrate the universal soliton-like behavior of the collision-induced amplitude shifts by carrying out numerical simulations with the two perturbed coupled linear evolution models with three different initial conditions corresponding to pulses with exponentially decreasing tails, pulses with power-law decreasing tails, and pulses that are initially nonsmooth and that develop significant tails during the collision. In all six cases we observe very good agreement between the analytic predictions for the amplitude shifts and the results of the numerical simulations.

nlin.PS

Soliton-like behavior in fast two-pulse collisions in weakly perturbed linear physical systems

We demonstrate that pulses of linear physical systems, weakly perturbed by nonlinear dissipation, exhibit soliton-like behavior in fast collisions. The behavior is demonstrated for linear waveguides with weak cubic loss and for systems described by linear diffusion-advection models with weak quadratic loss. We show that in both systems, the expressions for the collision-induced amplitude shifts due to the nonlinear loss have the same form as the expression for the amplitude shift in a fast collision between two optical solitons in the presence of weak cubic loss. Our analytic predictions are confirmed by numerical simulations with the corresponding coupled linear evolution models with weak nonlinear loss. These results open the way for studying dynamics of fast collisions between pulses of weakly perturbed linear physical systems in an arbitrary spatial dimension.

nlin.PS

Stable scalable control of soliton propagation in broadband nonlinear optical waveguides

We develop a method for achieving scalable transmission stabilization and switching of $N$ colliding soliton sequences in optical waveguides with broadband delayed Raman response and narrowband nonlinear gain-loss. We show that dynamics of soliton amplitudes in $N$-sequence transmission is described by a generalized $N$-dimensional predator-prey model. Stability and bifurcation analysis for the predator-prey model are used to obtain simple conditions on the physical parameters for robust transmission stabilization as well as on-off and off-on switching of $M$ out of $N$ soliton sequences. Numerical simulations for single-waveguide transmission with a system of $N$ coupled nonlinear Schrödinger equations with $2 \le N \le 4$ show excellent agreement with the predator-prey model's predictions and stable propagation over significantly larger distances compared with other broadband nonlinear single-waveguide systems. Moreover, stable on-off and off-on switching of multiple soliton sequences and stable multiple transmission switching events are demonstrated by the simulations. We discuss the reasons for the robustness and scalability of transmission stabilization and switching in waveguides with broadband delayed Raman response and narrowband nonlinear gain-loss, and explain their advantages compared with other broadband nonlinear waveguides.

nlin.PS

Transmission stability and Raman-induced amplitude dynamics in multichannel soliton-based optical waveguide systems

We study transmission stability and dynamics of pulse amplitudes in $N$-channel soliton-based optical waveguide systems, taking into account second-order dispersion, Kerr nonlinearity, delayed Raman response, and frequency dependent linear gain-loss. We carry out numerical simulations with systems of $N$ coupled nonlinear Schrödinger (NLS) equations and compare the results with the predictions of a simplified predator-prey model for Raman-induced amplitude dynamics. Coupled-NLS simulations for single-fiber transmission with $2 \le N \le 4$ frequency channels show stable oscillatory dynamics of soliton amplitudes at short-to-intermediate distances, in excellent agreement with the predator-prey model's predictions. However, at larger distances, we observe transmission destabilization due to resonant formation of radiative sidebands, which is caused by Kerr nonlinearity. The presence of linear gain-loss in a single fiber leads to a limited increase in transmission stability. Significantly stronger enhancement of transmission stability is achieved in a nonlinear $N$-waveguide coupler due to efficient suppression of radiative sideband generation by the linear gain-loss. As a result, the distances along which stable Raman-induced dynamics of soliton amplitudes is observed are significantly larger in the waveguide coupler system compared with the single-fiber system.

nlin.PS

Stabilizing soliton-based multichannel transmission with frequency dependent linear gain-loss

We report several major theoretical steps towards realizing stable long-distance multichannel soliton transmission in Kerr nonlinear waveguide loops. We find that transmission destabilization in a single waveguide is caused by resonant formation of radiative sidebands and investigate the possibility to increase transmission stability by optimization with respect to the Kerr nonlinearity coefficient $γ$. Moreover, we develop a general method for transmission stabilization, based on frequency dependent linear gain-loss in Kerr nonlinear waveguide couplers, and implement it in two-channel and three-channel transmission. We show that the introduction of frequency dependent loss leads to significant enhancement of transmission stability even for non-optimal $γ$ values via decay of radiative sidebands, which takes place as a dynamic phase transition. For waveguide couplers with frequency dependent linear gain-loss, we observe stable oscillations of soliton amplitudes due to decay and regeneration of the radiative sidebands.

nlin.PS

Robust transmission stabilization and dynamic switching in broadband hybrid waveguide systems with nonlinear gain and loss

We develop a method for transmission stabilization and robust dynamic switching for colliding optical soliton sequences in broadband waveguide systems with nonlinear gain and loss. The method is based on employing hybrid waveguides, consisting of spans with linear gain and cubic loss, and spans with linear loss, cubic gain, and quintic loss. We show that amplitude dynamics is described by a hybrid Lotka-Volterra (LV) model, and use the model to determine the physical parameter values required for enhanced transmission stabilization and switching. Numerical simulations with the coupled nonlinear Schrödinger equations confirm the predictions of the LV model, and show stable transmission over distances larger by an order of magnitude compared with uniform waveguides with linear gain and cubic loss. Moreover, multiple on-off and off-on dynamic switching events are demonstrated over a wide range of soliton amplitudes, showing the superiority of hybrid waveguides compared with static switching in uniform waveguides, considered in earlier studies.

nlin.PS

Many-body interaction in fast soliton collisions

We study $n$-pulse interaction in fast collisions of $N$ solitons of the cubic nonlinear Schrödinger (NLS) equation in the presence of generic weak nonlinear loss. We develop a reduced model that yields the contribution of $n$-pulse interaction to the amplitude shift for collisions in the presence of weak $(2m+1)$-order loss, for any $n$ and $m$. We first employ the reduced model and numerical solution of the perturbed NLS equation to analyze soliton collisions in the presence of septic loss $(m=3)$. Our calculations show that three-pulse interaction gives the dominant contribution to the collision-induced amplitude shift already in a full-overlap four-soliton collision, and that the amplitude shift strongly depends on the initial soliton positions. We then extend these results for a generic weak nonlinear loss of the form $G(|ψ|^{2})ψ$, where $ψ$ is the physical field and $G$ is a Taylor polynomial of degree $m_{c}$. Considering $m_{c}=3$, as an example, we show that three-pulse interaction gives the dominant contribution to the amplitude shift in a six-soliton collision, despite the presence of low-order loss. Our study quantitatively demonstrates that $n$-pulse interaction with high $n$ values plays a key role in fast collisions of NLS solitons in the presence of generic nonlinear loss. Moreover, the scalings of $n$-pulse interaction effects with $n$ and $m$ and the strong dependence on initial soliton positions lead to complex collision dynamics, which is very different from the one observed in fast NLS soliton collisions in the presence of cubic loss.

nlin.PS

Deterministic Raman crosstalk effects in amplified wavelength division multiplexing transmission

We study the deterministic effects of Raman-induced crosstalk in amplified wavelength division multiplexing (WDM) optical fiber transmission lines. We show that the dynamics of pulse amplitudes in an N-channel transmission system is described by an N-dimensional predator-prey model. We find the equilibrium states with non-zero amplitudes and prove their stability by obtaining the Lyapunov function. The stability is independent of the exact details of the approximation for the Raman gain curve. Furthermore, we investigate the impact of cross phase modulation and Raman self and cross frequency shifts on the dynamics and establish the stability of the equilibrium state with respect to these perturbations. Our results provide a quantitative explanation for the robustness of differential-phase-shift-keyed WDM transmission against Raman crosstalk effects.

physics.optics

Diverging probability density functions for flat-top solitary waves

We investigate the statistics of flat-top solitary wave parameters in the presence of weak multiplicative dissipative disorder. We consider first propagation of solitary waves of the cubic-quintic nonlinear Schrödinger equation (CQNLSE) in the presence of disorder in the cubic nonlinear gain. We show by a perturbative analytic calculation and by Monte Carlo simulations that the probability density function (PDF) of the amplitude $η$ exhibits loglognormal divergence near the maximum possible amplitude $η_{m}$, a behavior that is similar to the one observed earlier for disorder in the linear gain [A. Peleg et al., Phys. Rev. E {\bf 72}, 027203 (2005)]. We relate the loglognormal divergence of the amplitude PDF to the super-exponential approach of $η$ to $η_{m}$ in the corresponding deterministic model with linear/nonlinear gain. Furthermore, for solitary waves of the derivative CQNLSE with weak disorder in the linear gain both the amplitude and the group velocity $β$ become random. We therefore study analytically and by Monte Carlo simulations the PDF of the parameter $p$, where $p=η/(1-\varepsilon_sβ/2)$ and $\varepsilon_s$ is the self-steepening coefficient. Our analytic calculations and numerical simulations show that the PDF of $p$ is loglognormally divergent near the maximum $p$-value.

nlin.PS