arXiv subjects

R. B. Gerber

Publications and source records attributed to R. B. Gerber.

5 recordsLinked to original sources

arXiv1998

Fractal Analysis of Protein Potential Energy Landscapes

The fractal properties of the total potential energy V as a function of time t are studied for a number of systems, including realistic models of proteins (PPT, BPTI and myoglobin). The fractal dimension of V(t), characterized by the exponent γ, is almost independent of temperature and increases with time, more slowly the larger the protein. Perhaps the most striking observation of this study is the apparent universality of the fractal dimension, which depends only weakly on the type of molecular system. We explain this behavior by assuming that fractality is caused by a self-generated dynamical noise, a consequence of intermode coupling due to anharmonicity. Global topological features of the potential energy landscape are found to have little effect on the observed fractal behavior.

cond-mat.soft↗

arXiv1998

Structure Determination of Disordered Metallic Sub-Monolayers by Helium Scattering: A Theoretical and Experimental Study

An approach based on He scattering is used to develop an atomic-level structural model for an epitaxially grown disordered sub-monolayer of Ag on Pt(111) at 38K. Quantum scattering calculations are used to fit structural models to the measured angular intensity distribution of He atoms scattered from this system. The structure obtained corresponds to narrowly size-dispersed compact clusters with modest translational disorder, and not to fractals which might be expected due to the low surface temperature. The clusters have up to two layers in height, the lower one having few defects only. The relations between specific features of the angular scattering distribution, and properties such as the cluster sizes and shapes, the inter-cluster distance distribution etc., are discussed. The results demonstrate the usefulness of He scattering as a tool for unraveling new complex surface phases.

cond-mat.mtrl-sci↗

arXiv1997

He Scattering from Random Adsorbates, Disordered Compact Islands and Fractal Submonolayers: Intensity Manifestations of Surface Disorder

A theoretical study is made on He scattering from three fundamental classes of disordered ad-layers: (a) Translationally random adsorbates, (b) disordered compact islands and (c) fractal submonolayers. The implications of the results to experimental studies of He scattering from disordered surfaces are discussed, and a combined experimental-theoretical study is made for Ag submonolayers on Pt(111). Some of the main theoretical findings are: (1) Structural aspects of the calculated intensities from translationally random clusters were found to be strongly correlated with those of individual clusters. (2) Low intensity Bragg interference peaks appear even for scattering from very small ad-islands, and contain information on the ad-island local electron structure. (3) For fractal islands, just as for islands with a different structure, the off-specular intensity depends on the parameters of the He/Ag interaction, and does not follow a universal power law as previously proposed in the literature. In the experimental-theoretical study of Ag on Pt(111), we use first experimental He scattering data from low-coverage (single adsorbate) systems to determine an empirical He/Ag-Pt potential of good quality. Then, we carry out He scattering calculations for high coverage and compare with experiments. The conclusions are that the actual experimental phase corresponds to small compact Ag clusters of narrow size distribution, translationally disordered on the surface.

physics.chem-ph↗

arXiv1996

Fractal Dimension of Disordered Submonolayers: Determination from He Scattering Data

We propose a novel method to measure the fractal dimension of a submonolayer metal adatom system grown under conditions of limited diffusivity on a surface. The method is based on measuring the specular peak attenuation of He atoms scattered from the surface, as a function of incidence energy. The (Minkowski) fractal dimension thus obtained is that of contours of constant electron density of the adatom system. Simulation results are presented, based on experimental data. A coverage dependent fractal dimension is found from a two-decade wide scaling regime.

chem-ph↗

arXiv1995

Optical Theorem and the Inversion of Cross Section Data for Atom Scattering from Defects on Surfaces

The information content and properties of the cross section for atom scattering from a defect on a flat surface are investigated. Using the Sudden approximation, a simple expression is obtained that relates the cross section to the underlying atom/defect interaction potential. An approximate inversion formula is given, that determines the shape function of the defect from the scattering data. Another inversion formula approximately determines the potential due to a weak corrugation in the case of substitutional disorder. An Optical Theorem, derived in the framework of the Sudden approximation, plays a central role in deriving the equations that conveniently relate the interaction potential to the cross section. Also essential for the result is the equivalence of the operational definition for the cross section for scattering by a defect, given by Poelsema and Comsa, and the formal definition from quantum scattering theory. This equivalence is established here. The inversion result is applied to determine the shape function of an Ag atom on Pt(111) from scattering data.

chem-ph↗