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Radmila Sazdanovic

Publications and source records attributed to Radmila Sazdanovic.

At least 19 recordsLinked to original sources

A whittled complex for the Khovanov homology of torus links

We give an algorithm for reducing the number of generators of the Khovanov chain complex of the torus braid $ft^k_n = (\sigma_1\sigma_2\cdots \sigma_{n-1})^k$ on $n$ strands by applying Bar-Natan Gaussian elimination along a distinguished set of Gaussian elimination isomorphisms. We call the resulting complex $\mathcal{FT}^k_n$ a \emph{whittled complex} for the Khovanov homology of torus braids. Using this algorithm, we provide a bound for the number of generators at a fixed homological degree in our whittled complex.

math.GT

Dowker's theorem for higher-order relations

Given a relation $R \subseteq I \times J$ between two sets, Dowker's Theorem (1952) states that the homology groups of two associated simplicial complexes, now known as Dowker complexes, are isomorphic. In its modern form, the full result asserts a functorial homotopy equivalence between the two Dowker complexes. What can be said about relations defined on three or more sets? We present a simple generalization to multiway relations of the form $R \subseteq I_1 \times I_2 \times \cdots \times I_m$. The theorem asserts functorial homotopy equivalences between $m$ multiway Dowker complexes and a variant of the rectangle complex of Brun and Salbu from their recent short proof of Dowker's Theorem. Our proof uses Smale's homotopy mapping theorem and factors through a cellular Dowker lemma that expresses the main idea in more general form. To make the geometry more transparent, we work with a class of spaces called prod-complexes then transfer the results to simplicial complexes through a simplexification process. We conclude with a detailed study of ternary relations, identifying seven functorially defined homotopy types and twelve natural transformations between them.

math.AT

Data Driven Perspectives on Knot Theory

Data science offers a powerful tool to understand objects in multiple sciences. In this paper we utilize concept of data science, most notably topological data analysis, to extend our understanding of knot theory. This approach provides a way to extend mathematical exposition of various invariants of knots towards understanding their relations in statistical and cumulative way. Paper included examples illustrating how topological data analysis can illuminate structure and relations between knot invariants, state new hypothesis, and gain new insides into long standing conjectures.

math.GT

Torsion in Magnitude homology theories

In this article, we analyze the structure and relationships between magnitude homology and Eulerian magnitude homology of finite graphs. Building on the work of Kaneta and Yoshinaga, Sazdanovic and Summers, and Asao and Izumihara, we provide two proofs of the existence of torsion in Eulerian magnitude homology, offer insights into the types and orders of torsion, and present explicit computations for various classes of graphs.

math.AT

Structure of the chromatic polynomial

Recently, big data techniques such as machine learning and topological data analysis have made their way to theoretical mathematics. Motivated by the recent work with polynomial invariants for knots, we use manifold learning and topological data analysis techniques to explore the structure and properties of the point cloud consisting of the chromatic polynomials of graphs up to 10 crossings. Although chromatic, as well as the Tutte polynomial fail to distinguish graphs, according to a conjecture by Bollobas, Pebody and Riordan they approximate the space of random graphs. In this work we compare structures in the chromatic data revealed using filtered PCA and Ball Mapper techniques, and relate them with a range of numerical invariants for graphs.

math.AT

A survey of simplicial, relative, and chain complex homology theories for hypergraphs

Hypergraphs have seen widespread application in network and data science communities in recent years. We present a survey of recent work to construct auxiliary structures from hypergraphs -- specifically simplicial, relative, and chain complexes -- that can be used to build homology theories for hypergraphs. We define and describe nine different constructions and their associated homology theories. We discuss some interesting properties of each homology theory to show how various hypergraph properties imply properties of the homology groups. We also include discussion of functoriality for several of the homology theories. Finally, we provide a series of illustrative examples by computing many of these homology theories for small hypergraphs to show the variability of the methods and build intuition.

math.AT

Mapper-type algorithms for complex data and relations

Mapper and Ball Mapper are Topological Data Analysis tools used for exploring high dimensional point clouds and visualizing scalar-valued functions on those point clouds. Inspired by open questions in knot theory, new features are added to Ball Mapper that enable encoding of the structure, internal relations and symmetries of the point cloud. Moreover, the strengths of Mapper and Ball Mapper constructions are combined to create a tool for comparing high dimensional data descriptors of a single dataset. This new hybrid algorithm, Mapper on Ball Mapper, is applicable to high dimensional lens functions. As a proof of concept we include applications to knot and game theory, as well as material science and cancer research.

math.AT

A Topological Data Analysis Study on Murine Pulmonary Arterial Trees with Pulmonary Hypertension

Pulmonary hypertension (PH), defined by a mean pulmonary arterial blood pressure above 20 mmHg, is a cardiovascular disease impacting the pulmonary vasculature. PH is accompanied by vascular remodeling, wherein vessels become stiffer, large vessels dilate, and smaller vessels constrict. Some types of PH, including hypoxia-induced PH (HPH), lead to microvascular rarefaction. The goal of this study is to analyze the change in pulmonary arterial network morphometry in the presence of HPH. To do so, we use novel methods from topological data analysis (TDA), employing persistent homology to quantify arterial network morphometry for control and hypertensive mice. These methods are used to characterize arterial trees extracted from micro-computed tomography (micro-CT) images. To compare results between control and hypertensive animals, we normalize generated networks using three pruning algorithms. This proof-of-concept study shows that the pruning methods effects the spatial tree statistics and complexities of the trees. Results show that HPH trees have higher depth and that the directional complexities correlate with branch number, except for trees pruned by vessel radius, where the left and anterior complexity are lower compared to control trees. While more data is required to make a conclusion about the overall effect of HPH on network topology, this study provides a framework for analyzing the topology of biological networks and is a step towards the extraction of relevant information for diagnosing and detecting HPH.

q-bio.QM

Torsion in thin regions of Khovanov homology

In the integral Khovanov homology of links, the presence of odd torsion is rare. Homologically thin links, that is links whose Khovanov homology is supported on two adjacent diagonals, are known to only contain $\mathbb{Z}_2$ torsion. In this paper, we prove a local version of this result. If the Khovanov homology of a link is supported in two adjacent diagonals over a range of homological gradings and the Khovanov homology satisfies some other mild restrictions, then the Khovanov homology of that link has only $\mathbb{Z}_2$ torsion over that range of homological gradings. These conditions are then shown to be met by an infinite family of 3-braids, strictly containing all 3-strand torus links, thus giving a partial answer to Sazdanovic and Przytycki's conjecture that 3-braids have only $\mathbb{Z}_2$ torsion in Khovanov homology. We also give explicit computations of integral Khovanov homology for all links in this family.

math.GT

Bilinear pairings on two-dimensional cobordisms and generalizations of the Deligne category

The Deligne category of symmetric groups is the additive Karoubi closure of the partition category. It is semisimple for generic values of the parameter t while producing categories of representations of the symmetric group when modded out by the ideal of negligible morphisms when t is a non-negative integer. The partition category may be interpreted, following Comes, via a particular linearization of the category of two-dimensional oriented cobordisms. The Deligne category and its semisimple quotients admit similar interpretations. This viewpoint coupled to the universal construction of two-dimensional topological theories leads to multi-parameter monoidal generalizations of the partition and the Deligne categories, one for each rational function in one variable.

math.QA

Diagrammatic categorification of the Chebyshev polynomials of the second kind

We develop a diagrammatic categorification of the polynomial ring Z[x], based on a geometrically defined graded algebra. This construction generalizes to categorification of some special functions, such as Chebyshev polynomials. Diagrammatic algebras featured in these categorifications lead to the first topological interpretations of the Bernstein-Gelfand-Gelfand reciprocity property.

math.RT

Extremal Khovanov homology and the girth of a knot

We utilize relations between Khovanov and chromatic graph homology to determine extreme Khovanov groups and corresponding coefficients of the Jones polynomial. The extent to which chromatic homology and chromatic polynomial can be used to compute integral Khovanov homology of a link depends on the maximal girth of its all-positive graphs. In this paper we also define the girth of a link, discuss relations to other knot invariants, and the possible values for girth. Analyzing girth leads to a description of possible all-A state graphs of any given link; e.g., if a link has a diagram such that the girth of the corresponding all-A graph is equal to $\ell>2$, than the girth of the link is equal to $\ell.$

math.GT

Torsion in the Magnitude homology of graphs

Magnitude homology is a bigraded homology theory for finite graphs defined by Hepworth and Willerton, categorifying the power series invariant known as magnitude which was introduced by Leinster. We analyze the structure and implications of torsion in magnitude homology. We show that any finitely generated abelian group may appear as a subgroup of the magnitude homology of a graph, and, in particular, that torsion of a given prime order can appear in the magnitude homology of a graph and that there are infinitely many such graphs. Finally, we provide complete computations of magnitude homology of outerplanar graphs and focus on the ranks of the groups along the main diagonal of magnitude homology.

math.CO

Big Data Approaches to Knot Theory: Understanding the Structure of the Jones Polynomial

We examine the structure and dimensionality of the Jones polynomial using manifold learning techniques. Our data set consists of more than 10 million knots up to 17 crossings and two other special families up to 2001 crossings. We introduce and describe a method for using filtrations to analyze infinite data sets where representative sampling is impossible or impractical, an essential requirement for working with knots and the data from knot invariants. In particular, this method provides a new approach for analyzing knot invariants using Principal Component Analysis. Using this approach on the Jones polynomial data we find that it can be viewed as an approximately 3 dimensional manifold, that this description is surprisingly stable with respect to the filtration by the crossing number, and that the results suggest further structures to be examined and understood.

math.GT

A Broken Circuit Model for Chromatic Homology Theories

Using the tools of algebraic Morse theory, and the thin poset approach to constructing homology theories, we give a categorification of Whitney's broken circuit theorem for the chromatic polynomial, and for Stanley's chromatic symmetric function.

math.CO

On the Strength of Chromatic Symmetric Homology for graphs

In this paper, we investigate the strength of chromatic symmetric homology as a graph invariant. Chromatic symmetric homology is a lift of the chromatic symmetric function for graphs to a homological setting, and its Frobenius characteristic is a q,t generalization of the chromatic symmetric function. We exhibit three pairs of graphs where each pair has the same chromatic symmetric function but distinct homology. We also show that integral chromatic symmetric homology contains torsion, and based on computations, conjecture that Z_2-torsion in bigrading (1,0) detects nonplanarity in the graph.

math.CO

Local Versus Global Distances for Zigzag Persistence Modules

This short note establishes explicit and broadly applicable relationships between persistence-based distances computed locally and globally. In particular, we show that the bottleneck distance between two zigzag persistence modules restricted to an interval is always bounded above by the distance between the unrestricted versions. While this result is not surprising, it could have different practical implications. We give two related applications for metric graph distances, as well as an extension for the matching distance between multiparameter persistence modules.

math.AT