arXiv subjects

Rae A. Corrigan Grove

Publications and source records attributed to Rae A. Corrigan Grove.

3 recordsLinked to original sources

arXiv2026

Modeling Reactions on the Solid-Liquid Interface With Next Generation Extended Lagrangian Quantum-Based Molecular Dynamics

We present a series of simulations of the oxygen reduction reaction (ORR) using a novel framework for atomistic simulations of surface catalysis under electrochemical bias. The framework makes use of quantum-mechanical extended Lagrangian Born-Oppenheimer molecular dynamics (XL-BOMD) simulations, which provide the speed and accuracy required for explicit atomistic treatment of both electrode and electrolyte. Simulations of solvated O$_2$ near nitrogen-doped graphene (NG) were performed to gain insight into the ORR, and different mechanisms were observed, depending on the applied bias. Under higher bias the ORR occurred by an outer-sphere mechanism, without adsorption of O$_2$ to NG. In this mechanism, electron transfer between the catalyst and the O$_2$ was mediated by the solvent. Under lower bias the ORR occurred by an inner-sphere mechanism involving adsorption of O$_2$ to NG, leading to direct electron transfer. Our extensive, all-atom quantum-mechanical molecular dynamics simulations also show clear differences between the kinetics of the ORR on this ideally polarizable electrode and commonly used kinetic theories, leading to new insights regarding mechanistic changes with varied overpotentials. Combining quantum accuracy with explicit solvation and electrostatic potential bias, XL-BOMD opens a route to predictive, atomistic insight into electrocatalytic processes, as demonstrated with the ORR.

physics.chem-ph↗

arXiv2026

SEDACS: A Scalable Framework for Complex Chemistry Simulations

Graph-based linear-scaling electronic-structure theory provides a scalable framework for parallel quantum-mechanical molecular dynamics (QMD) simulations by exploiting the nearsightedness of the non-local electronic connectivity in non-metallic systems. When combined with recent shadow molecular dynamics in an extended-Lagrangian formulation, it enables stable long-time simulations of large, chemically active systems. This article introduces the Scalable Ecosystem, Driver, and Analyzer for Complex Chemistry Simulations (SEDACS), which integrates all these advances within a modular, Python-based software package for large-scale QMD simulations driven by external electronic-structure codes. SEDACS provides a tunable, adaptive graph construction in which edges encode the non-local electronic overlap between atoms. This graph is then decomposed into a set of smaller, overlapping subgraphs, where the electronic structure of each of these subgraphs is solved for independently and in parallel using an external electronic-structure code. SEDACS can be coupled to a variety of external electronic-structure solvers with minimal modifications to their software, enabling rapid adoption of the graph-based QMD approach. In this way, SEDACS can greatly extend the capability of existing electronic-structure packages by enabling stable QMD simulations of systems that were previously computationally inaccessible. We demonstrate highly efficient and stable QMD simulations for chemically active systems with tens of thousands of atoms by interfacing SEDACS with an external Fortran-based electronic-structure code based on self-consistent-charge density functional tight-binding theory.

physics.chem-ph↗

arXiv2025

Shadow Molecular Dynamics for Flexible Multipole Models

Shadow molecular dynamics provide an efficient and stable atomistic simulation framework for flexible charge models with long-range electrostatic interactions. While previous implementations have been limited to atomic monopole charge distributions, we extend this approach to flexible multipole models. We derive detailed expressions for the shadow energy functions, potentials, and force terms, explicitly incorporating monopole-monopole, dipole-monopole, and dipole-dipole interactions. In our formulation, both atomic monopoles and atomic dipoles are treated as extended dynamical variables alongside the propagation of the nuclear degrees of freedom. We demonstrate that introducing the additional dipole degrees of freedom preserves the stability and accuracy previously seen in monopole-only shadow molecular dynamics simulations. Additionally, we present a shadow molecular dynamics scheme where the monopole charges are held fixed while the dipoles remain flexible. Our extended shadow dynamics provide a framework for stable, computationally efficient, and versatile molecular dynamics simulations involving long-range interactions between flexible multipoles. This is of particular interest in combination with modern artificial intelligence and machine learning techniques, which are increasingly used to develop physics-informed and data-driven foundation models for atomistic simulations. These models aim to provide transferable, high-accuracy representations of atomic interactions that are applicable across diverse sets of molecular systems, which requires accurate treatment of long-range charge interactions.

physics.chem-ph↗