arXiv subjects

Rajiv Gupta

Publications and source records attributed to Rajiv Gupta.

24 records · Page 2Linked to original sources

arXiv2023

Graph Analytics on Evolving Data (Abstract)

We consider the problem of graph analytics on evolving graphs. In this scenario, a query typically needs to be applied to different snapshots of the graph over an extended time window. We propose CommonGraph, an approach for efficient processing of queries on evolving graphs. We first observe that edge deletions are significantly more expensive than addition operations. CommonGraph converts all deletions to additions by finding a common graph that exists across all snapshots. After computing the query on this graph, to reach any snapshot, we simply need to add the missing edges and incrementally update the query results. CommonGraph also allows sharing of common additions among snapshots that require them, and breaks the sequential dependency inherent in the traditional streaming approach where snapshots are processed in sequence, enabling additional opportunities for parallelism. We incorporate the CommonGraph approach by extending the KickStarter streaming framework. CommonGraph achieves 1.38x-8.17x improvement in performance over Kickstarter across multiple benchmarks.

cs.DB↗

arXiv2022

Apps Gone Rogue: Maintaining Personal Privacy in an Epidemic

Containment, the key strategy in quickly halting an epidemic, requires rapid identification and quarantine of the infected individuals, determination of whom they have had close contact with in the previous days and weeks, and decontamination of locations the infected individual has visited. Achieving containment demands accurate and timely collection of the infected individual's location and contact history. Traditionally, this process is labor intensive, susceptible to memory errors, and fraught with privacy concerns. With the recent almost ubiquitous availability of smart phones, many people carry a tool which can be utilized to quickly identify an infected individual's contacts during an epidemic, such as the current 2019 novel Coronavirus crisis. Unfortunately, the very same first-generation contact tracing tools have been used to expand mass surveillance, limit individual freedoms and expose the most private details about individuals. We seek to outline the different technological approaches to mobile-phone based contact-tracing to date and elaborate on the opportunities and the risks that these technologies pose to individuals and societies. We describe advanced security enhancing approaches that can mitigate these risks and describe trade-offs one must make when developing and deploying any mass contact-tracing technology. With this paper, our aim is to continue to grow the conversation regarding contact-tracing for epidemic and pandemic containment and discuss opportunities to advance this space. We invite feedback and discussion.

cs.CR↗

arXiv2022

Generalizability of Machine Learning Models: Quantitative Evaluation of Three Methodological Pitfalls

Purpose: Despite the potential of machine learning models, the lack of generalizability has hindered their widespread adoption in clinical practice. We investigate three methodological pitfalls: (1) violation of independence assumption, (2) model evaluation with an inappropriate performance indicator or baseline for comparison, and (3) batch effect. Materials and Methods: Using several retrospective datasets, we implement machine learning models with and without the pitfalls to quantitatively illustrate these pitfalls' effect on model generalizability. Results: Violation of independence assumption, more specifically, applying oversampling, feature selection, and data augmentation before splitting data into train, validation, and test sets, respectively, led to misleading and superficial gains in F1 scores of 71.2% in predicting local recurrence and 5.0% in predicting 3-year overall survival in head and neck cancer as well as 46.0% in distinguishing histopathological patterns in lung cancer. Further, randomly distributing data points for a subject across training, validation, and test sets led to a 21.8% superficial increase in F1 score. Also, we showed the importance of the choice of performance measures and baseline for comparison. In the presence of batch effect, a model built for pneumonia detection led to F1 score of 98.7%. However, when the same model was applied to a new dataset of normal patients, it only correctly classified 3.86% of the samples. Conclusions: These methodological pitfalls cannot be captured using internal model evaluation, and the inaccurate predictions made by such models may lead to wrong conclusions and interpretations. Therefore, understanding and avoiding these pitfalls is necessary for developing generalizable models.

cs.LG↗

arXiv2021

Urine Microscopic Image Dataset

Urinalysis is a standard diagnostic test to detect urinary system related problems. The automation of urinalysis will reduce the overall diagnostic time. Recent studies used urine microscopic datasets for designing deep learning based algorithms to classify and detect urine cells. But these datasets are not publicly available for further research. To alleviate the need for urine datsets, we prepare our urine sediment microscopic image (UMID) dataset comprising of around 3700 cell annotations and 3 categories of cells namely RBC, pus and epithelial cells. We discuss the several challenges involved in preparing the dataset and the annotations. We make the dataset publicly available.

q-bio.QM↗

arXiv2019

Split Learning for collaborative deep learning in healthcare

Shortage of labeled data has been holding the surge of deep learning in healthcare back, as sample sizes are often small, patient information cannot be shared openly, and multi-center collaborative studies are a burden to set up. Distributed machine learning methods promise to mitigate these problems. We argue for a split learning based approach and apply this distributed learning method for the first time in the medical field to compare performance against (1) centrally hosted and (2) non collaborative configurations for a range of participants. Two medical deep learning tasks are used to compare split learning to conventional single and multi center approaches: a binary classification problem of a data set of 9000 fundus photos, and multi-label classification problem of a data set of 156,535 chest X-rays. The several distributed learning setups are compared for a range of 1-50 distributed participants. Performance of the split learning configuration remained constant for any number of clients compared to a single center study, showing a marked difference compared to the non collaborative configuration after 2 clients (p < 0.001) for both sets. Our results affirm the benefits of collaborative training of deep neural networks in health care. Our work proves the significant benefit of distributed learning in healthcare, and paves the way for future real-world implementations.

cs.LG↗

arXiv2014

Adapting Graph Application Performance via Alternate Data Structure Representation

Graph processing is used extensively in areas from social networking mining to web indexing. We demonstrate that the performance and dependability of such applications critically hinges on the graph data structure used, because a fixed, compile-time choice of data structure can lead to poor performance or applications unable to complete. To address this problem, we introduce an approach that helps programmers transform regular, off-the-shelf graph applications into adaptive, more dependable applications where adaptations are performed via runtime selection from alternate data structure representations. Using our approach, applications dynamically adapt to the input graph's characteristics and changes in available memory so they continue to run when faced with adverse conditions such as low memory. Experiments with graph algorithms on real-world (e.g., Wikipedia metadata, Gnutella topology) and synthetic graph datasets show that our adaptive applications run to completion with lower execution time and/or memory utilization in comparison to their non-adaptive versions.

cs.PL↗