arXiv subjects

Raphael Voituriez

Publications and source records attributed to Raphael Voituriez.

32 records · Page 2Linked to original sources

arXiv2014

Protrusion fluctuations direct cell motion

Many physiological phenomena involve directional cell migration. It is usually attributed to chemical gradients in vivo. Recently, other cues have been shown to guide cells in vitro, including stiffness/adhesion gradients or micro-patterned adhesive motifs. However, the cellular mechanism leading to these biased migrations remains unknown, and, often, even the direction of motion is unpredictable. In this study, we show the key role of fluctuating protrusions on ratchet-like structures in driving NIH3T3 cell migration. We identified the concept of efficient protrusion and an associated direction index. Our analysis of the protrusion statistics facilitated the quantitative prediction of cell trajectories in all investigated conditions. We varied the external cues by changing the adhesive patterns. We also modified the internal cues using drug treatments, which modified the protrusion activity. Stochasticity affects the short- and long-term steps. We developed a theoretical model showing that an asymmetry in the protrusion fluctuations is sufficient for predicting all measures associated with the long-term motion, which can be described as a biased persistent random walk.

q-bio.CB↗

arXiv2013

Numerical simulation of the dynamics of molecular markers involved in cell polarisation

A cell is polarised when it has developed a main axis of organisation through the reorganisation of its cytosqueleton and its intracellular organelles. Polarisation can occur spontaneously or be triggered by external signals, like gradients of signaling molecules ... In this work, we study mathematical models for cell polarisation. These models are based on nonlinear convection-diffusion equations. The nonlinearity in the transport term expresses the positive loop between the level of protein concentration localised in a small area of the cell membrane and the number of new proteins that will be convected to the same area. We perform numerical simulations and we illustrate that these models are rich enough to describe the apparition of a polarisome.

math.AP↗

arXiv2013

Numerical simulation on a cell polarisation model: the polar case

When it is polarised, a cell develops an asymmetric distribution of specific molecular markers, cytoskeleton and cell membrane shape. Polarisation can occur spontaneously or be triggered by external signals, like gradients of signalling molecules... In this work, we use the published models of cell polarisation and we set a numerical analysis for these models. They are based on nonlinear convection-diffusion equations and the nonlinearity in the transport term expresses the positive loop between the level of protein concentration localised in a small area of the cell membrane and the number of new proteins that will be convected to the same area. We perform numerical simulations and we illustrate that these models are rich enough to describe the apparition of a polarisome.

math.AP↗

arXiv2012

Spatial Log Periodic Oscillations of First-Passage Observables in Fractals

For transport processes in geometrically restricted domains, the mean first-passage time (MFPT) admits a general scaling dependence on space parameters for diffusion, anomalous diffusion, and diffusion in disordered or fractal media. For transport in self-similar fractal structures, we obtain a new expression for the source-target distance dependence of the MFPT that exhibits both the leading power law behavior, depending on the Hausdorff and spectral dimension of the fractal, as well as small log periodic oscillations that are a clear and definitive signal of the underlying fractal structure. We also present refined numerical results for the Sierpinski gasket that confirm this oscillatory behavior.

cond-mat.stat-mech↗

arXiv2012

Invasion fronts with variable motility: phenotype selection, spatial sorting and wave acceleration

Invasion fronts in ecology are well studied but very few mathematical results concern the case with variable motility (possibly due to mutations). Based on an apparently simple reaction-diffusion equation, we explain the observed phenomena of front acceleration (when the motility is unbounded) as well as other quantitative results, such as the selection of the most motile individuals (when the motility is bounded). The key argument for the construction and analysis of traveling fronts is the derivation of the dispersion relation linking the speed of the wave and the spatial decay. When the motility is unbounded we show that the position of the front scales as $t^{3/2}$. When the mutation rate is low we show that the canonical equation for the dynamics of the fittest trait should be stated as a PDE in our context. It turns out to be a type of Burgers equation with source term.

math.AP↗

arXiv2011

Analysis of a non local model for spontaneous cell polarisation

In this work, we investigate the dynamics of a non-local model describing spontaneous cell polarisation. It consists in a drift-diffusion equation set in the half-space, with the coupling involving the trace value on the boundary. We characterize the following behaviours in the one-dimensional case: solutions are global if the mass is below the critical mass and they blow-up in finite time above the critical mass. The higher-dimensional case is also discussed. The results are reminiscent of the classical Keller-Segel system in double the dimension. In addition, in the one-dimensional case we prove quantitative convergence results using relative entropy techniques. This work is complemented with a more realistic model that takes into account dynamical exchange of molecular content at the boundary. In the one-dimensional case we prove that blow-up is prevented. Furthermore, density converges towards a non trivial stationary configuration.

math.AP↗

arXiv2011

Residual mean first-passage time for jump processes: theory and applications to Lévy flights and fractional Brownian motion

We derive a functional equation for the mean first-passage time (MFPT) of a generic self-similar Markovian continuous process to a target in a one-dimensional domain and obtain its exact solution. We show that the obtained expression of the MFPT for continuous processes is actually different from the large system size limit of the MFPT for discrete jump processes allowing leapovers. In the case considered here, the asymptotic MFPT admits non-vanishing corrections, which we call residual MFPT. The case of L/'evy flights with diverging variance of jump lengths is investigated in detail, in particular, with respect to the associated leapover behaviour. We also show numerically that our results apply with good accuracy to fractional Brownian motion, despite its non-Markovian nature.

cond-mat.stat-mech↗

arXiv2011

Close or connected? Distance and connectivity effects on transport in networks

We develop an analytical approach which provides the dependence of the mean first-passage time (MFPT) for random walks on complex networks both on the target connectivity and on the source-target distance. Our approach puts forward two strongly different behaviors depending on the type - compact or non compact - of the random walk. In the case of non compact exploration, we show that the MFPT scales linearly with the inverse connectivity of the target, and is largely independent of the starting point. On the contrary, in the compact case the MFPT is controlled by the source-target distance, and we find that unexpectedly the target connectivity becomes irrelevant for remote targets.

cond-mat.stat-mech↗

arXiv2010

Response to targeted perturbations for random walks on networks

We introduce a general framework, applicable to a broad class of random walks on networks, that quantifies the response of the mean first-passage time to a target node to a local perturbation of the network, both in the context of attacks (damaged link) or strategies of transport enhancement (added link). This approach enables to determine explicitly the dependence of this response on geometric parameters (such as the network size and the localization of the perturbation) and on the intensity of the perturbation. In particular, it is showed that the relative variation of the MFPT is independent of the network size, and remains significant in the large size limit. Furthermore, in the case of non compact exploration of the network, it is found that a targeted perturbation keeps a substantial impact on transport properties for any localization of the damaged link.

cond-mat.stat-mech↗

arXiv2010

Quantitative analysis of single particle trajectories: mean maximal excursion method

An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions, i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean squared displacement we show that the mean maximal excursion analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the mean maximal excursion method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. We put the methods to test using experimental data as well as simulated time series from different models for normal and anomalous dynamics, such as diffusion on fractals, continuous time random walks, and fractional Brownian motion.

cond-mat.stat-mech↗

arXiv2009

Rebuilding cytoskeleton roads: Active-transport-induced polarization of cells

Many cellular processes require a polarization axis which generally initially emerges as an inhomogeneous distribution of molecular markers in the cell. We present a simple analytical model of a general mechanism of cell polarization taking into account the positive feedback due to the coupled dynamics of molecular markers and cytoskeleton filaments. We find that the geometry of the organization of cytoskeleton filaments, nucleated on the membrane (e.g., cortical actin) or from a center in the cytoplasm (e.g., microtubule asters), dictates whether the system is capable of spontaneous polarization or polarizes only in response to external asymmetric signals. Our model also captures the main features of recent experiments of cell polarization in two considerably different biological systems, namely, mating budding yeast and neuron growth cones.

q-bio.CB↗

arXiv2004

Conformal Geometry and Invariants of 3-strand Brownian Braids

We propose a simple geometrical construction of topological invariants of 3-strand Brownian braids viewed as world lines of 3 particles performing independent Brownian motions in the complex plane z. Our construction is based on the properties of conformal maps of doubly-punctured plane z to the universal covering surface. The special attention is paid to the case of indistinguishable particles. Our method of conformal maps allows us to investigate the statistical properties of the topological complexity of a bunch of 3-strand Brownian braids and to compute the expectation value of the irreducible braid length in the non-Abelian case.

hep-th↗

arXiv2001

On the Plants Leaves Boundary, "Jupe à Godets" and Conformal Embeddings

The stable profile of the boundary of a plant's leaf fluctuating in the direction transversal to the leaf's surface is described in the framework of a model called a "surface à godets". It is shown that the information on the profile is encoded in the Jacobian of a conformal mapping (the coefficient of deformation) corresponding to an isometric embedding of a uniform Cayley tree into the 3D Euclidean space. The geometric characteristics of the leaf's boundary (like the perimeter and the height) are calculated. In addition a symbolic language allowing to investigate statistical properties of a "surface à godets" with annealed random defects of curvature of density $q$ is developed. It is found that at $q=1$ the surface exhibits a phase transition with critical exponent $α=1/2$ from the exponentially growing to the flat structure.

cond-mat.soft↗

arXiv2000

Random walks on hyperbolic groups and their Riemann surfaces

We investigate invariants for random elements of different hyperbolic groups. We provide a method, using Cayley graphs of groups, to compute the probability distribution of the minimal length of a random word, and explicitly compute the drift in different cases, including the braid group $B_3$. We also compute in this case the return probability. The action of these groups on the hyperbolic plane is investigated, and the distribution of a geometric invariant, the hyperbolic distance, is given. These two invariants are shown to be related by a closed formula.

math-ph↗