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Reinhard Lipowsky

Publications and source records attributed to Reinhard Lipowsky.

52 records · Page 3Linked to original sources

Active diffusion of motor particles

The movement of motor particles consisting of one or several molecular motors bound to a cargo particle is studied theoretically. The particles move on patterns of immobilized filaments. Several patterns are described for which the motor particles undergo non-directed but enhanced diffusion. Depending on the walking distance of the particles and the mesh size of the patterns, the active diffusion coefficient exhibits three different regimes. For micrometer-sized motor particles in water, e.g., this diffusion coefficient can be enhanced by two orders of magnitude.

cond-mat.stat-mech↗

Molecular motor traffic in a half-open tube

The traffic of molecular motors which interact through mutual exclusion is studied theoretically for half-open tube-like compartments. These half-open tubes mimic the shapes of axons. The mutual exclusion leads to traffic jams or density plateaus on the filaments. A phase transition is obtained when the motor velocity changes sign. We identify the relevant length scales and characterize the jamming behavior using both analytical approximations and Monte Carlo simulations of lattice models.

cond-mat.stat-mech↗

Movements of molecular motors: Ratchets, random walks and traffic phenomena

Processive molecular motors which drive the traffic of organelles in cells move in a directed way along cytoskeletal filaments. On large time scales, they perform motor walks, i.e., peculiar random walks which arise from the repeated unbinding from and rebinding to filaments. Unbound motors perform Brownian motion in the surrounding fluid. In addition, the traffic of molecular motors exhibits many cooperative phenomena. In particular, it faces similar problems as the traffic on streets such as the occurrence of traffic jams and the coordination of (two-way) traffic. These issues are studied here theoretically using lattice models.

cond-mat.stat-mech↗

Self-organized density patterns of molecular motors in arrays of cytoskeletal filaments

The stationary states of systems with many molecular motors are studied theoretically for uniaxial and centered (aster-like) arrangements of cytoskeletal filaments using Monte Carlo simulations and a two-state model. Mutual exclusion of motors from binding sites of the filaments is taken into account. For small overall motor concentration, the density profiles are exponential and algebraic in uniaxial and centered filament systems, respectively. For uniaxial systems, exclusion leads to the coexistence of regions of high and low densities of bound motors corresponding to motor traffic jams, which grow upon increasing the overall motor concentration. These jams are insensitive to the motor behavior at the end of the filament. In centered systems, traffic jams remain small and an increase in the motor concentration leads to a flattening of the profile, if the motors move inwards, and to the build-up of a concentration maximum in the center of the aster if motors move outwards. In addition to motors density patterns, we also determine the corresponding patterns of the motor current.

q-bio.SC↗

Shape fluctuations and elastic properties of two-component bilayer membranes

The elastic properties of two-component bilayer membranes are studied using a coarse grain model for amphiphilic molecules. The two species of amphiphiles considered here differ only in their length. Molecular Dynamics simulations are performed in order to analyze the shape fluctuations of the two-component bilayer membranes and to determine their bending rigidity. Both the bending rigidity and its inverse are found to be nonmonotonic functions of the mole fraction $x_{\rm B}$ of the shorter B-amphiphiles and, thus, do not satisfy a simple lever rule. The intrinsic area of the bilayer also exhibits a nonmonotonic dependence on $x_{\rm B}$ and a maximum close to $x_{\rm B} \simeq 1/2$.

cond-mat.soft↗

Asymmetric simple exclusion processes with diffusive bottlenecks

One-dimensional asymmetric simple exclusion processes (ASEPs) which are coupled to external reservoirs via diffusive transport are studied. These ASEPs consist of active compartments characterized by directed movements of the particles and diffusive compartments in which the particles undergo unbiased diffusion. Phase diagrams are obtained by a self-consistent mean field approach and by Monte Carlo simulations. The diffusive compartments act as diffusive bottlenecks if the velocity of the driven compartments or ASEPs is sufficiently large. A diffusive bottleneck at the boundary of the system leads to the absence of a maximal current phase, while a diffusive bottleneck in the interior of the system leads to a new phase characterized by different densities in the two active compartments adjacent to the diffusive one and to a maximal current defined by the bottleneck.

cond-mat.stat-mech↗

Walks of molecular motors interacting with immobilized filaments

Movements of molecular motors on cytoskeletal filaments are described by directed walks on a line. Detachment from this line is allowed to occur with a small probability. Motion in the surrounding fluid is described by symmetric random walks. Effects of detachment and reattachment are calculated by an analytical solution of the master equation. Results are obtained for the fraction of bound motors, their average velocity and displacement. Enclosing the system in a finite geometry (tube, slab) leads to an experimentally realizable problem, that is studied in a continuum description and also numerically in a lattice simulation.

cond-mat.stat-mech↗

Phase transitions in systems with two species of molecular motors

Systems with two species of active molecular motors moving on (cytoskeletal) filaments into opposite directions are studied theoretically using driven lattice gas models. The motors can unbind from and rebind to the filaments. Two motors are more likely to bind on adjacent filament sites if they belong to the same species. These systems exhibit (i) Continuous phase transitions towards states with spontaneously broken symmetry, where one motor species is largely excluded from the filament, (ii) Hysteresis of the total current upon varying the relative concentrations of the two motor species, and (iii) Coexistence of traffic lanes with opposite directionality in multi-filament systems. These theoretical predictions should be experimentally accessible.

cond-mat.stat-mech↗

Mechanisms of pattern formation during T cell adhesion

T cells form intriguing patterns during adhesion to antigen-presenting cells. The patterns at the cell-cell contact zone are composed of two types of domains, which either contain short TCR/MHCp receptor-ligand complexes or the longer LFA-1/ICAM-1 complexes. The final pattern consists of a central TCR/MHCp domain surrounded by a ring-shaped LFA-1/ICAM-1 domain, while the characteristic pattern formed at intermediate times is inverted with TCR/MHCp complexes at the periphery of the contact zone and LFA-1/ICAM-1 complexes in the center. In this article, we present a statistical-mechanical model of cell adhesion and propose a novel mechanism for the T cell pattern formation. Our mechanism for the formation of the intermediate inverted pattern is based (i) on the initial nucleation of numerous TCR/MHCp microdomains, and (ii) on the diffusion of free receptors and ligands into the contact zone. Due to this inward diffusion, TCR/MHCp microdomains at the rim of the contact zone grow faster and form an intermediate peripheral ring for sufficiently large TCR/MHCp concentrations. In agreement with experiments, we find that the formation of the final pattern with a central TCR/MHCp domain requires active cytoskeletal transport processes. Without active transport, the intermediate inverted pattern seems to be metastable in our model, which might explain patterns observed during natural killer (NK) cell adhesion. At smaller TCR/MHCp complex concentrations, we observe a different regime of pattern formation with intermediate multifocal TCR/MHCp patterns which resemble experimental patterns found during thymozyte adhesion.

q-bio.SC↗

Random walks of molecular motors arising from diffusional encounters with immobilized filaments

Movements of molecular motors on cytoskeletal filaments are described by directed walks on a line. Detachment from this line is allowed to occur with a small probability. Motion in the surrounding fluid is described by symmetric random walks. Effects of detachment and reattachment are calculated by an analytical solution of the master equation in two and three dimensions. Results are obtained for the fraction of bound motors, their average velocity and displacement. The diffusion coefficient parallel to the filament becomes anomalously large since detachment and subsequent reattachment, in the presence of directed motion of the bound motors, leads to a broadening of the density distribution. The occurrence of protofilaments on a microtubule is modeled by internal states of the binding sites. After a transient time all protofilaments become equally populated.

cond-mat.stat-mech↗

Traffic of molecular motors through tube-like compartments

The traffic of molecular motors through open tube-like compartments is studied using lattice models. These models exhibit boundary-induced phase transitions related to those of the asymmetric simple exclusion process (ASEP) in one dimension. The location of the transition lines depends on the boundary conditions at the two ends of the tubes. Three types of boundary conditions are studied: (A) Periodic boundary conditions which correspond to a closed torus-like tube. (B) Fixed motor densities at the two tube ends where radial equilibrium holds locally; and (C) Diffusive motor injection at one end and diffusive motor extraction at the other end. In addition to the phase diagrams, we also determine the profiles for the bound and unbound motor densities using mean field approximations and Monte Carlo simulations. Our theoretical predictions are accessible to experiments.

cond-mat.stat-mech↗

Adhesion of membranes with competing specific and generic interactions

Biomimetic membranes in contact with a planar substrate or a second membrane are studied theoretically. The membranes contain specific adhesion molecules (stickers) which are attracted by the second surface. In the absence of stickers, the trans--interaction between the membrane and the second surface is assumed to be repulsive at short separations. It is shown that the interplay of specific attractive and generic repulsive interactions can lead to the formation of a potential barrier. This barrier induces a line tension between bound and unbound membrane segments which results in lateral phase separation during adhesion. The mechanism for adhesion--induced phase separation is rather general, as is demonstrated by considering two distinct cases involving: (i) stickers with a linear attractive potential, and (ii) stickers with a short--ranged square--well potential. In both cases, membrane fluctuations reduce the potential barrier and, therefore, decrease the tendency of phase separation.

cond-mat.soft↗

Walks of molecular motors in two and three dimensions

Molecular motors interacting with cytoskeletal filaments undergo peculiar random walks consisting of alternating sequences of directed movements along the filaments and diffusive motion in the surrounding solution. An ensemble of motors is studied which interacts with a single filament in two and three dimensions. The time evolution of the probability distribution for the bound and unbound motors is determined analytically. The diffusion of the motors is strongly enhanced parallel to the filament. The analytical expressions are in excellent agreement with the results of Monte Carlo simulations.

cond-mat.stat-mech↗

Contact angles on heterogeneous surfaces; a new look at Cassie's and Wenzel's laws

We consider a three dimensional liquid drop sitting on a rough and chemically heterogeneous substrate. Using a novel minimization technique on the free energy of this system, a generalized Young's equation for the contact angle is found. In certain limits, the Cassie and Wenzel laws, and a new equivalent rule, applicable in general, are derived. We also propose an equation in the same spirit as these results but valid on a more `microscopic' level. Throughout we work under the presence of gravity and keep account of line tension terms.

cond-mat.soft↗

Fluid Vesicles in Shear Flow

The shape dynamics of fluid vesicles is governed by the coupling of the flow within the two-dimensional membrane to the hydrodynamics of the surrounding bulk fluid. We present a numerical scheme which is capable of solving this flow problem for arbitrarily shaped vesicles using the Oseen tensor formalism. For the particular problem of simple shear flow, stationary shapes are found for a large range of parameters. The dependence of the orientation of the vesicle and the membrane velocity on shear rate and vesicle volume can be understood from a simplified model.

cond-mat↗

Gravity-Induced Shape Transformations of Vesicles

We theoretically study the behavior of vesicles filled with a liquid of higher density than the surrounding medium, a technique frequently used in experiments. In the presence of gravity, these vesicles sink to the bottom of the container, and eventually adhere even on non - attractive substrates. The strong size-dependence of the gravitational energy makes large parts of the phase diagram accessible to experiments even for small density differences. For relatively large volume, non-axisymmetric bound shapes are explicitly calculated and shown to be stable. Osmotic deflation of such a vesicle leads back to axisymmetric shapes, and, finally, to a collapsed state of the vesicle.

cond-mat↗