arXiv subjects

Renaud Lambiotte

Publications and source records attributed to Renaud Lambiotte.

At least 55 records · Page 3Linked to original sources

arXiv2024

Insights and caveats from mining local and global temporal motifs in cryptocurrency transaction networks

Distributed ledger technologies have opened up a wealth of fine-grained transaction data from cryptocurrencies like Bitcoin and Ethereum. This allows research into problems like anomaly detection, anti-money laundering, pattern mining and activity clustering (where data from traditional currencies is rarely available). The formalism of temporal networks offers a natural way of representing this data and offers access to a wealth of metrics and models. However, the large scale of the data presents a challenge using standard graph analysis techniques. We use temporal motifs to analyse two Bitcoin datasets and one NFT dataset, using sequences of three transactions and up to three users. We show that the commonly used technique of simply counting temporal motifs over all users and all time can give misleading conclusions. Here we also study the motifs contributed by each user and discover that the motif distribution is heavy-tailed and that the key players have diverse motif signatures. We study the motifs that occur in different time periods and find events and anomalous activity that cannot be seen just by a count on the whole dataset. Studying motif completion time reveals dynamics driven by human behaviour as well as algorithmic behaviour.

cs.SI↗

arXiv2024

Detection of anomalous spatio-temporal patterns of app traffic in response to catastrophic events

In this work, we uncover patterns of usage mobile phone applications and information spread in response to perturbations caused by unprecedented events. We focus on categorizing patterns of response in both space and time and tracking their relaxation over time. To this end, we use the NetMob2023 Data Challenge dataset, which provides mobile phone applications traffic volume data for several cities in France at a spatial resolution of 100$m^2$ and a time resolution of 15 minutes for a time period ranging from March to May 2019. We analyze the spread of information before, during, and after the catastrophic Notre-Dame fire on April 15th and a bombing that took place in the city centre of Lyon on May 24th using volume of data uploaded and downloaded to different mobile applications as a proxy of information transfer dynamics. We identify different clusters of information transfer dynamics in response to the Notre-Dame fire within the city of Paris as well as in other major French cities. We find a clear pattern of significantly above-baseline usage of the application Twitter (currently known as X) in Paris that radially spreads from the area surrounding the Notre-Dame cathedral to the rest of the city. We detect a similar pattern in the city of Lyon in response to the bombing. Further, we present a null model of radial information spread and develop methods of tracking radial patterns over time. Overall, we illustrate novel analytical methods we devise, showing how they enable a new perspective on mobile phone user response to unplanned catastrophic events, giving insight into how information spreads during a catastrophe in both time and space.

physics.soc-ph↗

arXiv2024

Mean-field approximation for networks with synchrony-driven adaptive coupling

Synaptic plasticity is a key component of neuronal dynamics, describing the process by which the connections between neurons change in response to experiences. In this study, we extend a network model of $θ$-neuron oscillators to include a realistic form of adaptive plasticity. In place of the less tractable spike-timing-dependent plasticity, we employ recently validated phase-difference-dependent plasticity rules, which adjust coupling strengths based on the relative phases of $θ$-neuron oscillators. We investigate two approaches for implementing this plasticity: pairwise coupling strength updates and global coupling strength updates. A mean-field approximation of the system is derived and we investigate its validity through comparison with the $θ$-neuron simulations across various stability states. The synchrony of the system is examined using the Kuramoto order parameter. A bifurcation analysis, by means of numerical continuation and the calculation of maximal Lyapunov exponents, reveals interesting phenomena, including bistability and evidence of period-doubling and boundary crisis routes to chaos, that would otherwise not exist in the absence of adaptive coupling.

q-bio.NC↗

arXiv2024

SignedLouvain: Louvain for signed networks

In this article, we consider the problem of community detection in signed networks. We propose SignedLouvain, an adaptation of the Louvain method to maximise signed modularity, efficiently taking advantage of the structure induced by signed relations. We begin by identifying the inherent limitations of applying the standard Louvain algorithm to signed networks, before introducing a novel variant specifically engineered to overcome these challenges. Through extensive experiments on real-world datasets, we demonstrate that the proposed method not only maintains the speed and scalability of its predecessor but also significantly enhances accuracy in detecting communities within signed networks.

cs.SI↗

arXiv2024

Augmentations of Forman's Ricci Curvature and their Applications in Community Detection

The notion of curvature on graphs has recently gained traction in the networks community, with the Ollivier-Ricci curvature (ORC) in particular being used for several tasks in network analysis, such as community detection. In this work, we choose a different approach and study augmentations of the discretization of the Ricci curvature proposed by Forman (AFRC). We empirically and theoretically investigate its relation to the ORC and the un-augmented Forman-Ricci curvature. In particular, we provide evidence that the AFRC frequently gives sufficient insight into the structure of a network to be used for community detection, and therefore provides a computationally cheaper alternative to previous ORC-based methods. Our novel AFRC-based community detection algorithm is competitive with an ORC-based approach.

math.CO↗

arXiv2024

Patterns of link reciprocity in directed, signed networks

Most of the analyses concerning signed networks have focused on the balance theory, hence identifying frustration with undirected, triadic motifs having an odd number of negative edges; much less attention has been paid to their directed counterparts. To fill this gap, we focus on signed, directed connections, with the aim of exploring the notion of frustration in such a context. When dealing with signed, directed edges, frustration is a multi-faceted concept, admitting different definitions at different scales: if we limit ourselves to consider cycles of length two, frustration is related to reciprocity, i.e. the tendency of edges to admit the presence of partners pointing in the opposite direction. As the reciprocity of signed networks is still poorly understood, we adopt a principled approach for its study, defining quantities and introducing models to consistently capture empirical patterns of the kind. In order to quantify the tendency of empirical networks to form either mutualistic or antagonistic cycles of length two, we extend the Exponential Random Graphs framework to binary, directed, signed networks with global and local constraints and, then, compare the empirical abundance of the aforementioned patterns with the one expected under each model. We find that the (directed extension of the) balance theory is not capable of providing a consistent explanation of the patterns characterising the directed, signed networks considered in this work. Although part of the ambiguities can be solved by adopting a coarser definition of balance, our results call for a different theory, accounting for the directionality of edges in a coherent manner. In any case, the evidence that the empirical, signed networks can be highly reciprocated leads us to recommend to explicitly account for the role played by bidirectional dyads in determining frustration at higher levels (e.g. the triadic one).

physics.soc-ph↗

arXiv2024

Strong and Weak Random Walks on Signed Networks

Random walks play an important role in probing the structure of complex networks. On traditional networks, they can be used to extract community structure, understand node centrality, perform link prediction, or capture the similarity between nodes. On signed networks, where the edge weights can be either positive or negative, it is non-trivial to design a random walk which can be used to extract information about the signed structure of the network, in particular the ability to partition the graph into communities with positive edges inside and negative edges in between. Prior works on signed network random walks focus on the case where there are only two such communities (strong balance), which is rarely the case in empirical networks. In this paper, we propose a signed network random walk which can capture the structure of a network with more than two such communities (weak balance). The walk results in a similarity matrix which can be used to cluster the nodes into antagonistic communities. We compare the characteristics of the so-called strong and weak random walks, in terms of walk length and stationarity. We show through a series of experiments on synthetic and empirical networks that the similarity matrix based on weak walks can be used for both unsupervised and semi-supervised clustering, outperforming the same similarity matrix based on strong walks when the graph has more than two communities, or exhibits asymmetry in the density of links. These results suggest that other random-walk based algorithms for signed networks could be improved simply by running them with weak walks instead of strong walks.

physics.soc-ph↗

arXiv2024

An approximation for return time distributions of random walks on sparse networks

We propose an approximation for the first return time distribution of random walks on undirected networks. We combine a message-passing solution with a mean-field approximation, to account for the short- and long-term behaviours respectively. We test this approximation on several classes of large graphs and find excellent agreement between our approximations and the true distributions. While the statistical properties of a random walk will depend on the structure of the network, the observed agreement between our approximations and numerical calculations implies that while local structure is clearly very influential, global structure is only important in a relatively superficial way, namely through the total number of edges.

cs.SI↗

arXiv2024

Link Me Baby One More Time: Social Music Discovery on Spotify

We explore the social and contextual factors that influence the outcome of person-to-person music recommendations and discovery. Specifically, we use data from Spotify to investigate how a link sent from one user to another results in the receiver engaging with the music of the shared artist. We consider several factors that may influence this process, such as the strength of the sender-receiver relationship, the user's role in the Spotify social network, their music social cohesion, and how similar the new artist is to the receiver's taste. We find that the receiver of a link is more likely to engage with a new artist when (1) they have similar music taste to the sender and the shared track is a good fit for their taste, (2) they have a stronger and more intimate tie with the sender, and (3) the shared artist is popular amongst the receiver's connections. Finally, we use these findings to build a Random Forest classifier to predict whether a shared music track will result in the receiver's engagement with the shared artist. This model elucidates which type of social and contextual features are most predictive, although peak performance is achieved when a diverse set of features are included. These findings provide new insights into the multifaceted mechanisms underpinning the interplay between music discovery and social processes.

cs.SI↗

arXiv2024

Testing structural balance theories in heterogeneous signed networks

The abundance of data about social relationships allows the human behavior to be analyzed as any other natural phenomenon. Here we focus on balance theory, stating that social actors tend to avoid establishing cycles with an odd number of negative links. This statement, however, can be supported only after a comparison with a benchmark. Since the existing ones disregard actors' heterogeneity, we extend Exponential Random Graphs to signed networks with both global and local constraints and employ them to assess the significance of empirical unbalanced patterns. We find that the nature of balance crucially depends on the null model: while homogeneous benchmarks favor the weak balance theory, according to which only triangles with one negative link should be under-represented, heterogeneous benchmarks favor the strong balance theory, according to which also triangles with all negative links should be under-represented. Biological networks, instead, display strong frustration under any benchmark, confirming that structural balance inherently characterizes social networks.

physics.soc-ph↗

arXiv2024

Local dominance unveils clusters in networks

Clusters or communities can provide a coarse-grained description of complex systems at multiple scales, but their detection remains challenging in practice. Community detection methods often define communities as dense subgraphs, or subgraphs with few connections in-between, via concepts such as the cut, conductance, or modularity. Here we consider another perspective built on the notion of local dominance, where low-degree nodes are assigned to the basin of influence of high-degree nodes, and design an efficient algorithm based on local information. Local dominance gives rises to community centers, and uncovers local hierarchies in the network. Community centers have a larger degree than their neighbors and are sufficiently distant from other centers. The strength of our framework is demonstrated on synthesized and empirical networks with ground-truth community labels. The notion of local dominance and the associated asymmetric relations between nodes are not restricted to community detection, and can be utilised in clustering problems, as we illustrate on networks derived from vector data.

physics.soc-ph↗

arXiv2024

Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints

Extended-connectivity fingerprints (ECFPs) are a ubiquitous tool in current cheminformatics and molecular machine learning, and one of the most prevalent molecular feature extraction techniques used for chemical prediction. Atom features learned by graph neural networks can be aggregated to compound-level representations using a large spectrum of graph pooling methods; in contrast, sets of detected ECFP substructures are by default transformed into bit vectors using only a simple hash-based folding procedure. We introduce a general mathematical framework for the vectorisation of structural fingerprints via a formal operation called substructure pooling that encompasses hash-based folding, algorithmic substructure-selection, and a wide variety of other potential techniques. We go on to describe Sort & Slice, an easy-to-implement and bit-collision-free alternative to hash-based folding for the pooling of ECFP substructures. Sort & Slice first sorts ECFP substructures according to their relative prevalence in a given set of training compounds and then slices away all but the $L$ most frequent substructures which are subsequently used to generate a binary fingerprint of desired length, $L$. We computationally compare the performance of hash-based folding, Sort & Slice, and two advanced supervised substructure-selection schemes (filtering and mutual-information maximisation) for ECFP-based molecular property prediction. Our results indicate that, despite its technical simplicity, Sort & Slice robustly (and at times substantially) outperforms traditional hash-based folding as well as the other investigated methods across prediction tasks, data splitting techniques, machine-learning models and ECFP hyperparameters. We thus recommend that Sort & Slice canonically replace hash-based folding as the default substructure-pooling technique to vectorise ECFPs for supervised molecular machine learning.

cs.LG↗

arXiv2024

Spreading and Structural Balance on Signed Networks

Two competing types of interactions often play an important part in shaping system behavior, such as activatory or inhibitory functions in biological systems. Hence, signed networks, where each connection can be either positive or negative, have become popular models over recent years. However, the primary focus of the literature is on the unweighted and structurally unbalanced ones, where all cycles have an even number of negative edges. Hence here, we first introduce a classification of signed networks into balanced, antibalanced or strictly unbalanced ones, and then characterize each type of signed networks in terms of the spectral properties of the signed weighted adjacency matrix. In particular, we show that the spectral radius of the matrix with signs is smaller than that without if and only if the signed network is strictly unbalanced. These properties are important to understand the dynamics on signed networks, both linear and nonlinear ones. Specifically, we find consistent patterns in a linear and a nonlinear dynamics theoretically, depending on their type of balance. We also propose two measures to further characterize strictly unbalanced networks, motivated by perturbation theory. Finally, we numerically verify these properties through experiments on both synthetic and real networks.

cs.SI↗

arXiv2024

Raphtory: The temporal graph engine for Rust and Python

Raphtory is a platform for building and analysing temporal networks. The library includes methods for creating networks from a variety of data sources; algorithms to explore their structure and evolution; and an extensible GraphQL server for deployment of applications built on top. Raphtory's core engine is built in Rust, for efficiency, with Python interfaces, for ease of use. Raphtory is developed by network scientists, with a background in Physics, Applied Mathematics, Engineering and Computer Science, for use across academia and industry.

cs.SI↗

arXiv2023

Percolation Theories for Quantum Networks

Quantum networks have experienced rapid advancements in both theoretical and experimental domains over the last decade, making it increasingly important to understand their large-scale features from the viewpoint of statistical physics. This review paper discusses a fundamental question: how can entanglement be effectively and indirectly (e.g., through intermediate nodes) distributed between distant nodes in an imperfect quantum network, where the connections are only partially entangled and subject to quantum noise? We survey recent studies addressing this issue by drawing exact or approximate mappings to percolation theory, a branch of statistical physics centered on network connectivity. Notably, we show that the classical percolation frameworks do not uniquely define the network's indirect connectivity. This realization leads to the emergence of an alternative theory called ``concurrence percolation,'' which uncovers a previously unrecognized quantum advantage that emerges at large scales, suggesting that quantum networks are more resilient than initially assumed within classical percolation contexts, offering refreshing insights into future quantum network design.

quant-ph↗

arXiv2023

Fast unfolding of communities in large networks: 15 years later

The Louvain method was proposed 15 years ago as a heuristic method for the fast detection of communities in large networks. During this period, it has emerged as one of the most popular methods for community detection, the task of partitioning vertices of a network into dense groups, usually called communities or clusters. Here, after a short introduction to the method, we give an overview of the different generalizations and modifications that have been proposed in the literature, and also survey the quality functions, beyond modularity, for which it has been implemented.

physics.soc-ph↗

arXiv2023

Encapsulation Structure and Dynamics in Hypergraphs

Hypergraphs have emerged as a powerful modeling framework to represent systems with multiway interactions, that is systems where interactions may involve an arbitrary number of agents. Here we explore the properties of real-world hypergraphs, focusing on the encapsulation of their hyperedges, which is the extent that smaller hyperedges are subsets of larger hyperedges. Building on the concept of line graphs, our measures quantify the relations existing between hyperedges of different sizes and, as a byproduct, the compatibility of the data with a simplicial complex representation -- whose encapsulation would be maximum. We then turn to the impact of the observed structural patterns on diffusive dynamics, focusing on a variant of threshold models, called encapsulation dynamics, and demonstrate that non-random patterns can accelerate the spreading in the system.

cs.SI↗

arXiv2023

Structural Balance and Random Walks on Complex Networks with Complex Weights

Complex numbers define the relationship between entities in many situations. A canonical example would be the off-diagonal terms in a Hamiltonian matrix in quantum physics. Recent years have seen an increasing interest to extend the tools of network science when the weight of edges are complex numbers. Here, we focus on the case when the weight matrix is Hermitian, a reasonable assumption in many applications, and investigate both structural and dynamical properties of the complex-weighted networks. Building on concepts from signed graphs, we introduce a classification of complex-weighted networks based on the notion of structural balance, and illustrate the shared spectral properties within each type. We then apply the results to characterise the dynamics of random walks on complex-weighted networks, where local consensus can be achieved asymptotically when the graph is structurally balanced, while global consensus will be obtained when it is strictly unbalanced. Finally, we explore potential applications of our findings by generalising the notion of cut, and propose an associated spectral clustering algorithm. We also provide further characteristics of the magnetic Laplacian, associating directed networks to complex-weighted ones. The performance of the algorithm is verified on both synthetic and real networks.

cs.SI↗