arXiv subjects

Ribana Roscher

Publications and source records attributed to Ribana Roscher.

At least 37 records · Page 2Linked to original sources

arXiv2022

MapInWild: A Remote Sensing Dataset to Address the Question What Makes Nature Wild

Antrophonegic pressure (i.e. human influence) on the environment is one of the largest causes of the loss of biological diversity. Wilderness areas, in contrast, are home to undisturbed ecological processes. However, there is no biophysical definition of the term wilderness. Instead, wilderness is more of a philosophical or cultural concept and thus cannot be easily delineated or categorized in a technical manner. With this paper, (i) we introduce the task of wilderness mapping by means of machine learning applied to satellite imagery (ii) and publish MapInWild, a large-scale benchmark dataset curated for that task. MapInWild is a multi-modal dataset and comprises various geodata acquired and formed from a diverse set of Earth observation sensors. The dataset consists of 8144 images with a shape of 1920 x 1920 pixels and is approximately 350 GB in size. The images are weakly annotated with three classes derived from the World Database of Protected Areas - Strict Nature Reserves, Wilderness Areas, and National Parks. With the dataset, which shall serve as a testbed for developments in fields such as explainable machine learning and environmental remote sensing, we hope to contribute to a deepening of our understanding of the question "What makes nature wild?".

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arXiv2022

Exploring Wilderness Characteristics Using Explainable Machine Learning in Satellite Imagery

Wilderness areas offer important ecological and social benefits and there are urgent reasons to discover where their positive characteristics and ecological functions are present and able to flourish. We apply a novel explainable machine learning technique to satellite images which show wild and anthropogenic areas in Fennoscandia. Occluding certain activations in an interpretable artificial neural network we complete a comprehensive sensitivity analysis regarding wild and anthropogenic characteristics. This enables us to predict detailed and high-resolution sensitivity maps highlighting these characteristics. Our artificial neural network provides an interpretable activation space increasing confidence in our method. Within the activation space, regions are semantically arranged. Our approach advances explainable machine learning for remote sensing, offers opportunities for comprehensive analyses of existing wilderness, and has practical relevance for conservation efforts.

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arXiv2022

GrowliFlower: An image time series dataset for GROWth analysis of cauLIFLOWER

This article presents GrowliFlower, a georeferenced, image-based UAV time series dataset of two monitored cauliflower fields of size 0.39 and 0.60 ha acquired in 2020 and 2021. The dataset contains RGB and multispectral orthophotos from which about 14,000 individual plant coordinates are derived and provided. The coordinates enable the dataset users the extraction of complete and incomplete time series of image patches showing individual plants. The dataset contains collected phenotypic traits of 740 plants, including the developmental stage as well as plant and cauliflower size. As the harvestable product is completely covered by leaves, plant IDs and coordinates are provided to extract image pairs of plants pre and post defoliation, to facilitate estimations of cauliflower head size. Moreover, the dataset contains pixel-accurate leaf and plant instance segmentations, as well as stem annotations to address tasks like classification, detection, segmentation, instance segmentation, and similar computer vision tasks. The dataset aims to foster the development and evaluation of machine learning approaches. It specifically focuses on the analysis of growth and development of cauliflower and the derivation of phenotypic traits to foster the development of automation in agriculture. Two baseline results of instance segmentation at plant and leaf level based on the labeled instance segmentation data are presented. The entire data set is publicly available.

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arXiv2022

Temporal Prediction and Evaluation of Brassica Growth in the Field using Conditional Generative Adversarial Networks

Farmers frequently assess plant growth and performance as basis for making decisions when to take action in the field, such as fertilization, weed control, or harvesting. The prediction of plant growth is a major challenge, as it is affected by numerous and highly variable environmental factors. This paper proposes a novel monitoring approach that comprises high-throughput imaging sensor measurements and their automatic analysis to predict future plant growth. Our approach's core is a novel machine learning-based generative growth model based on conditional generative adversarial networks, which is able to predict the future appearance of individual plants. In experiments with RGB time-series images of laboratory-grown Arabidopsis thaliana and field-grown cauliflower plants, we show that our approach produces realistic, reliable, and reasonable images of future growth stages. The automatic interpretation of the generated images through neural network-based instance segmentation allows the derivation of various phenotypic traits that describe plant growth.

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arXiv2022

A Survey of Uncertainty in Deep Neural Networks

Due to their increasing spread, confidence in neural network predictions became more and more important. However, basic neural networks do not deliver certainty estimates or suffer from over or under confidence. Many researchers have been working on understanding and quantifying uncertainty in a neural network's prediction. As a result, different types and sources of uncertainty have been identified and a variety of approaches to measure and quantify uncertainty in neural networks have been proposed. This work gives a comprehensive overview of uncertainty estimation in neural networks, reviews recent advances in the field, highlights current challenges, and identifies potential research opportunities. It is intended to give anyone interested in uncertainty estimation in neural networks a broad overview and introduction, without presupposing prior knowledge in this field. A comprehensive introduction to the most crucial sources of uncertainty is given and their separation into reducible model uncertainty and not reducible data uncertainty is presented. The modeling of these uncertainties based on deterministic neural networks, Bayesian neural networks, ensemble of neural networks, and test-time data augmentation approaches is introduced and different branches of these fields as well as the latest developments are discussed. For a practical application, we discuss different measures of uncertainty, approaches for the calibration of neural networks and give an overview of existing baselines and implementations. Different examples from the wide spectrum of challenges in different fields give an idea of the needs and challenges regarding uncertainties in practical applications. Additionally, the practical limitations of current methods for mission- and safety-critical real world applications are discussed and an outlook on the next steps towards a broader usage of such methods is given.

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arXiv2022

Agricultural Plant Cataloging and Establishment of a Data Framework from UAV-based Crop Images by Computer Vision

UAV-based image retrieval in modern agriculture enables gathering large amounts of spatially referenced crop image data. In large-scale experiments, however, UAV images suffer from containing a multitudinous amount of crops in a complex canopy architecture. Especially for the observation of temporal effects, this complicates the recognition of individual plants over several images and the extraction of relevant information tremendously. In this work, we present a hands-on workflow for the automatized temporal and spatial identification and individualization of crop images from UAVs abbreviated as "cataloging" based on comprehensible computer vision methods. We evaluate the workflow on two real-world datasets. One dataset is recorded for observation of Cercospora leaf spot - a fungal disease - in sugar beet over an entire growing cycle. The other one deals with harvest prediction of cauliflower plants. The plant catalog is utilized for the extraction of single plant images seen over multiple time points. This gathers large-scale spatio-temporal image dataset that in turn can be applied to train further machine learning models including various data layers. The presented approach improves analysis and interpretation of UAV data in agriculture significantly. By validation with some reference data, our method shows an accuracy that is similar to more complex deep learning-based recognition techniques. Our workflow is able to automatize plant cataloging and training image extraction, especially for large datasets.

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arXiv2021

Maneuver-based Trajectory Prediction for Self-driving Cars Using Spatio-temporal Convolutional Networks

The ability to predict the future movements of other vehicles is a subconscious and effortless skill for humans and key to safe autonomous driving. Therefore, trajectory prediction for autonomous cars has gained a lot of attention in recent years. It is, however, still a hard task to achieve human-level performance. Interdependencies between vehicle behaviors and the multimodal nature of future intentions in a dynamic and complex driving environment render trajectory prediction a challenging problem. In this work, we propose a new, data-driven approach for predicting the motion of vehicles in a road environment. The model allows for inferring future intentions from the past interaction among vehicles in highway driving scenarios. Using our neighborhood-based data representation, the proposed system jointly exploits correlations in the spatial and temporal domain using convolutional neural networks. Our system considers multiple possible maneuver intentions and their corresponding motion and predicts the trajectory for five seconds into the future. We implemented our approach and evaluated it on two highway datasets taken in different countries and are able to achieve a competitive prediction performance.

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arXiv2021

Behind the leaves -- Estimation of occluded grapevine berries with conditional generative adversarial networks

The need for accurate yield estimates for viticulture is becoming more important due to increasing competition in the wine market worldwide. One of the most promising methods to estimate the harvest is berry counting, as it can be approached non-destructively, and its process can be automated. In this article, we present a method that addresses the challenge of occluded berries with leaves to obtain a more accurate estimate of the number of berries that will enable a better estimate of the harvest. We use generative adversarial networks, a deep learning-based approach that generates a likely scenario behind the leaves exploiting learned patterns from images with non-occluded berries. Our experiments show that the estimate of the number of berries after applying our method is closer to the manually counted reference. In contrast to applying a factor to the berry count, our approach better adapts to local conditions by directly involving the appearance of the visible berries. Furthermore, we show that our approach can identify which areas in the image should be changed by adding new berries without explicitly requiring information about hidden areas.

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arXiv2021

Towards a Collective Agenda on AI for Earth Science Data Analysis

In the last years we have witnessed the fields of geosciences and remote sensing and artificial intelligence to become closer. Thanks to both the massive availability of observational data, improved simulations, and algorithmic advances, these disciplines have found common objectives and challenges to advance the modeling and understanding of the Earth system. Despite such great opportunities, we also observed a worrying tendency to remain in disciplinary comfort zones applying recent advances from artificial intelligence on well resolved remote sensing problems. Here we take a position on research directions where we think the interface between these fields will have the most impact and become potential game changers. In our declared agenda for AI on Earth sciences, we aim to inspire researchers, especially the younger generations, to tackle these challenges for a real advance of remote sensing and the geosciences.

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arXiv2021

Artificial and beneficial -- Exploiting artificial images for aerial vehicle detection

Object detection in aerial images is an important task in environmental, economic, and infrastructure-related tasks. One of the most prominent applications is the detection of vehicles, for which deep learning approaches are increasingly used. A major challenge in such approaches is the limited amount of data that arises, for example, when more specialized and rarer vehicles such as agricultural machinery or construction vehicles are to be detected. This lack of data contrasts with the enormous data hunger of deep learning methods in general and object recognition in particular. In this article, we address this issue in the context of the detection of road vehicles in aerial images. To overcome the lack of annotated data, we propose a generative approach that generates top-down images by overlaying artificial vehicles created from 2D CAD drawings on artificial or real backgrounds. Our experiments with a modified RetinaNet object detection network show that adding these images to small real-world datasets significantly improves detection performance. In cases of very limited or even no real-world images, we observe an improvement in average precision of up to 0.70 points. We address the remaining performance gap to real-world datasets by analyzing the effect of the image composition of background and objects and give insights into the importance of background.

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arXiv2020

Counting of Grapevine Berries in Images via Semantic Segmentation using Convolutional Neural Networks

The extraction of phenotypic traits is often very time and labour intensive. Especially the investigation in viticulture is restricted to an on-site analysis due to the perennial nature of grapevine. Traditionally skilled experts examine small samples and extrapolate the results to a whole plot. Thereby different grapevine varieties and training systems, e.g. vertical shoot positioning (VSP) and semi minimal pruned hedges (SMPH) pose different challenges. In this paper we present an objective framework based on automatic image analysis which works on two different training systems. The images are collected semi automatic by a camera system which is installed in a modified grape harvester. The system produces overlapping images from the sides of the plants. Our framework uses a convolutional neural network to detect single berries in images by performing a semantic segmentation. Each berry is then counted with a connected component algorithm. We compare our results with the Mask-RCNN, a state-of-the-art network for instance segmentation and with a regression approach for counting. The experiments presented in this paper show that we are able to detect green berries in images despite of different training systems. We achieve an accuracy for the berry detection of 94.0% in the VSP and 85.6% in the SMPH.

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arXiv2020

Explainable Machine Learning for Scientific Insights and Discoveries

Machine learning methods have been remarkably successful for a wide range of application areas in the extraction of essential information from data. An exciting and relatively recent development is the uptake of machine learning in the natural sciences, where the major goal is to obtain novel scientific insights and discoveries from observational or simulated data. A prerequisite for obtaining a scientific outcome is domain knowledge, which is needed to gain explainability, but also to enhance scientific consistency. In this article we review explainable machine learning in view of applications in the natural sciences and discuss three core elements which we identified as relevant in this context: transparency, interpretability, and explainability. With respect to these core elements, we provide a survey of recent scientific works that incorporate machine learning and the way that explainable machine learning is used in combination with domain knowledge from the application areas.

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arXiv2019

Detection of Single Grapevine Berries in Images Using Fully Convolutional Neural Networks

Yield estimation and forecasting are of special interest in the field of grapevine breeding and viticulture. The number of harvested berries per plant is strongly correlated with the resulting quality. Therefore, early yield forecasting can enable a focused thinning of berries to ensure a high quality end product. Traditionally yield estimation is done by extrapolating from a small sample size and by utilizing historic data. Moreover, it needs to be carried out by skilled experts with much experience in this field. Berry detection in images offers a cheap, fast and non-invasive alternative to the otherwise time-consuming and subjective on-site analysis by experts. We apply fully convolutional neural networks on images acquired with the Phenoliner, a field phenotyping platform. We count single berries in images to avoid the error-prone detection of grapevine clusters. Clusters are often overlapping and can vary a lot in the size which makes the reliable detection of them difficult. We address especially the detection of white grapes directly in the vineyard. The detection of single berries is formulated as a classification task with three classes, namely 'berry', 'edge' and 'background'. A connected component algorithm is applied to determine the number of berries in one image. We compare the automatically counted number of berries with the manually detected berries in 60 images showing Riesling plants in vertical shoot positioned trellis (VSP) and semi minimal pruned hedges (SMPH). We are able to detect berries correctly within the VSP system with an accuracy of 94.0 \% and for the SMPH system with 85.6 \%.

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arXiv2018

Ocean Eddy Identification and Tracking using Neural Networks

Global climate change plays an essential role in our daily life. Mesoscale ocean eddies have a significant impact on global warming, since they affect the ocean dynamics, the energy as well as the mass transports of ocean circulation. From satellite altimetry we can derive high-resolution, global maps containing ocean signals with dominating coherent eddy structures. The aim of this study is the development and evaluation of a deep-learning based approach for the analysis of eddies. In detail, we develop an eddy identification and tracking framework with two different approaches that are mainly based on feature learning with convolutional neural networks. Furthermore, state-of-the-art image processing tools and object tracking methods are used to support the eddy tracking. In contrast to previous methods, our framework is able to learn a representation of the data in which eddies can be detected and tracked in more objective and robust way. We show the detection and tracking results on sea level anomalies (SLA) data from the area of Australia and the East Australia current, and compare our two eddy detection and tracking approaches to identify the most robust and objective method.

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arXiv2018

Archetypal Analysis for Sparse Representation-based Hyperspectral Sub-pixel Quantification

The estimation of land cover fractions from remote sensing images is a frequently used indicator of the environmental quality. This paper focuses on the quantification of land cover fractions in an urban area of Berlin, Germany, using simulated hyperspectral EnMAP data with a spatial resolution of 30m$\times$30m. We use constrained sparse representation, where each pixel with unknown surface characteristics is expressed by a weighted linear combination of elementary spectra with known land cover class. We automatically determine the elementary spectra from image reference data using archetypal analysis by simplex volume maximization, and combine it with reversible jump Markov chain Monte Carlo method. In our experiments, the estimation of the automatically derived elementary spectra is compared to the estimation obtained by a manually designed spectral library by means of reconstruction error, mean absolute error of the fraction estimates, sum of fractions, $R^2$, and the number of used elementary spectra. The experiments show that a collection of archetypes can be an adequate and efficient alternative to the manually designed spectral library with respect to the mentioned criteria.

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arXiv2017

Deep Self-taught Learning for Remote Sensing Image Classification

This paper addresses the land cover classification task for remote sensing images by deep self-taught learning. Our self-taught learning approach learns suitable feature representations of the input data using sparse representation and undercomplete dictionary learning. We propose a deep learning framework which extracts representations in multiple layers and use the output of the deepest layer as input to a classification algorithm. We evaluate our approach using a multispectral Landsat 5 TM image of a study area in the North of Novo Progresso (South America) and the Zurich Summer Data Set provided by the University of Zurich. Experiments indicate that features learned by a deep self-taught learning framework can be used for classification and improve the results compared to classification results using the original feature representation.

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arXiv2017

Automated Image Analysis Framework for the High-Throughput Determination of Grapevine Berry Sizes Using Conditional Random Fields

The berry size is one of the most important fruit traits in grapevine breeding. Non-invasive, image-based phenotyping promises a fast and precise method for the monitoring of the grapevine berry size. In the present study an automated image analyzing framework was developed in order to estimate the size of grapevine berries from images in a high-throughput manner. The framework includes (i) the detection of circular structures which are potentially berries and (ii) the classification of these into the class 'berry' or 'non-berry' by utilizing a conditional random field. The approach used the concept of a one-class classification, since only the target class 'berry' is of interest and needs to be modeled. Moreover, the classification was carried out by using an automated active learning approach, i.e no user interaction is required during the classification process and in addition, the process adapts automatically to changing image conditions, e.g. illumination or berry color. The framework was tested on three datasets consisting in total of 139 images. The images were taken in an experimental vineyard at different stages of grapevine growth according to the BBCH scale. The mean berry size of a plant estimated by the framework correlates with the manually measured berry size by $0.88$.

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arXiv2017

Sea Level Anomaly Prediction using Recurrent Neural Networks

Sea level change, one of the most dire impacts of anthropogenic global warming, will affect a large amount of the world's population. However, sea level change is not uniform in time and space, and the skill of conventional prediction methods is limited due to the ocean's internal variabi-lity on timescales from weeks to decades. Here we study the potential of neural network methods which have been used successfully in other applications, but rarely been applied for this task. We develop a combination of a convolutional neural network (CNN) and a recurrent neural network (RNN) to ana-lyse both the spatial and the temporal evolution of sea level and to suggest an independent, accurate method to predict interannual sea level anomalies (SLA). We test our method for the northern and equatorial Pacific Ocean, using gridded altimeter-derived SLA data. We show that the used network designs outperform a simple regression and that adding a CNN improves the skill significantly. The predictions are stable over several years.

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