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Ricardo Bruña

Publications and source records attributed to Ricardo Bruña.

2 recordsLinked to original sources

Phase Locking Value revisited: teaching new tricks to an old dog

Despite the increase in calculation power in the last decades, the estimation of brain connectivity is still a tedious task. The high computational cost of the algorithms escalates with the square of the number of signals evaluated, usually in the range of thousands. In this work we propose a re-formulation of a widely used algorithm that allows the estimation of whole brain connectivity in much smaller times. We start from the original implementation of Phase Locking Value (PLV) and re-formulated it in a highly computational efficient way. Besides, this formulation stresses its strong similarity with coherence, which we used to introduce two new metrics insensitive to zero lag synchronization, the imaginary part of PLV (iPLV) and its corrected counterpart (ciPLV). The new implementation of PLV avoids some highly CPU-expensive operations, and achieved a 100-fold speedup over the original algorithm. The new derived metrics were highly robust in the presence of volume conduction. ciPLV, in particular, proved capable of ignoring zero-lag connectivity, while correctly estimating nonzero-lag connectivity. Our implementation of PLV makes it possible to calculate whole-brain connectivity in much shorter times. The results of the simulations using ciPLV suggest that this metric is ideal to measure synchronization in the presence of volume conduction or source leakage effects.

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HERMES: towards an integrated toolbox to characterize functional and effective brain connectivity

The analysis of the interdependence between time series has become an important field of research in the last years, mainly as a result of advances in the characterization of dynamical systems from the signals they produce, the introduction of concepts such as generalized and phase synchronization and the application of information theory to time series analysis. In neurophysiology, different analytical tools stemming from these concepts have added to the 'traditional' set of linear methods, which includes the cross-correlation and the coherency function in the time and frequency domain, respectively, or more elaborated tools such as Granger Causality. This increase in the number of approaches to tackle the existence of functional (FC) or effective connectivity (EC) between two (or among many) neural networks, along with the mathematical complexity of the corresponding time series analysis tools, makes it desirable to arrange them into a unified-easy-to-use software package. The goal is to allow neuroscientists, neurophysiologists and researchers from related fields to easily access and make use of these analysis methods from a single integrated toolbox. Here we present HERMES (http://hermes.ctb.upm.es), a toolbox for the Matlab environment (The Mathworks, Inc), which is designed for the analysis functional and effective brain connectivity from neurophysiological data such as multivariate EEG and/or MEG records. It includes also visualization tools and statistical methods to address the problem of multiple comparisons. We believe that this toolbox will be very helpful to all the researchers working in the emerging field of brain connectivity analysis.

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