arXiv subjects

Ricardo Ruiz-Baier

Publications and source records attributed to Ricardo Ruiz-Baier.

At least 55 records · Page 3Linked to original sources

arXiv2022

Optimal error estimates of coupled and divergence-free virtual element methods for the Poisson--Nernst--Planck/Navier--Stokes equations

In this article, we propose and analyze a fully coupled, nonlinear, and energy-stable virtual element method (VEM) for solving the coupled Poisson-Nernst-Planck (PNP) and Navier--Stokes (NS) equations modeling microfluidic and electrochemical systems (diffuse transport of charged species within incompressible fluids coupled through electrostatic forces). A mixed VEM is employed to discretize the NS equations whereas classical VEM in primal form is used to discretize the PNP equations. The stability, existence and uniqueness of solution of the associated VEM are proved by fixed point theory. Global mass conservation and electric energy decay of the scheme are also proved. Also, we obtain unconditionally optimal error estimates for both the electrostatic potential and ionic concentrations of PNP equations in the $H^{1}$-norm, as well as for the velocity and pressure of NS equations in the $\mathbf{H}^{1}$- and $L^{2}$-norms, respectively. Finally, several numerical experiments are presented to support the theoretical analysis of convergence and to illustrate the satisfactory performance of the method in simulating the onset of electrokinetic instabilities in ionic fluids, and studying how they are influenced by different values of ion concentration and applied voltage. These tests relate to applications in the desalination of water.

math.NA↗

arXiv2022

A new DG method for a pure--stress formulation of the Brinkman problem with strong symmetry

A strongly symmetric stress approximation is proposed for the Brinkman equations with mixed boundary conditions. The resulting formulation solves for the Cauchy stress using a symmetric interior penalty discontinuous Galerkin method. Pressure and velocity are readily post-processed from stress, and a second post-process is shown to produce exactly divergence-free discrete velocities. We demonstrate the stability of the method with respect to a DG-energy norm and obtain error estimates that are explicit with respect to the coefficients of the problem. We derive optimal rates of convergence for the stress and for the post-processed variables. Moreover, under appropriate assumptions on the mesh, we prove optimal $L^2$-error estimates for the stress. Finally, we provide numerical examples in 2D and 3D.

math.NA↗

arXiv2022

Symmetric mixed discontinuous Galerkin methods for linear viscoelasticity

We propose and rigorously analyse semi- and fully discrete discontinuous Galerkin methods for an initial and boundary value problem describing inertial viscoelasticity in terms of elastic and viscoelastic stress components, and with mixed boundary conditions. The arbitrary-order spatial discretisation imposes strongly the symmetry of the stress tensor, and it is combined with a Newmark trapezoidal rule as time-advancing scheme. We establish stability and convergence properties, and the theoretical findings are further confirmed via illustrative numerical simulations in 2D and 3D.

math.NA↗

arXiv2021

Parameter-robust methods for the Biot-Stokes interfacial coupling without Lagrange multipliers

In this paper we advance the analysis of discretizations for a fluid-structure interaction model of the monolithic coupling between the free flow of a viscous Newtonian fluid and a deformable porous medium separated by an interface. A five-field mixed-primal finite element scheme is proposed solving for Stokes velocity-pressure and Biot displacement-total pressure-fluid pressure. Adequate inf-sup conditions are derived, and one of the distinctive features of the formulation is that its stability is established robustly in all material parameters. We propose robust preconditioners for this perturbed saddle-point problem using appropriately weighted operators in fractional Sobolev and metric spaces at the interface. The performance is corroborated by several test cases, including the application to interfacial flow in the brain.

math.NA↗

arXiv2021

Mechanochemical models for calcium waves in embryonic epithelia

In embryogenesis, epithelial cells, acting as individual entities or as coordinated aggregates in a tissue, exhibit strong coupling between chemical signalling and mechanical responses to internally or externally applied stresses. Intercellular communication in combination with such coordination of morphogenetic movements can lead to drastic modifications in the calcium distribution in the cells. In this paper we extend the recent mechanochemical model in [K. Kaouri, P.K. Maini, P.A. Skourides, N. Christodoulou, S.J. Chapman. J. Math. Biol., 78 (2019) 2059--2092], for an epithelial continuum in one dimension, to a more realistic multi-dimensional case. The resulting parametrised governing equations consist of an advection-diffusion-reaction system for calcium signalling coupled with active-stress linear viscoelasticity and equipped with pure Neumann boundary conditions. We implement a mixed finite element method for the simulation of this complex multiphysics problem. Special care is taken in the treatment of the stress-free boundary conditions for the viscoelasticity in order to eliminate rigid motions from the space of admissible displacements. The stability and solvability of the continuous weak formulation is shown using fixed-point theory. We investigate numerically the solutions of this system and show that solitary waves and periodic wavetrains of calcium propagate through the embryonic epithelial sheet. We analyse the bifurcations of the system guided by the bifurcation analysis of the one-dimensional model. We also demonstrate the nucleation of calcium sparks into synchronous calcium waves coupled with contraction. This coupled model can be employed to gain insights into recent experimental observations in the context of embryogenesis, but also in other biological systems such as cancer cells, wound healing, keratinocytes, or white blood cells.

q-bio.TO↗

arXiv2021

The Biot-Stokes coupling using total pressure: formulation, analysis and application to interfacial flow in the eye

We consider a multiphysics model for the flow of Newtonian fluid coupled with Biot consolidation equations through an interface, and incorporating total pressure as an unknown in the poroelastic region. A new mixed-primal finite element scheme is proposed solving for the pairs fluid velocity - pressure and displacement - total poroelastic pressure using Stokes-stable elements, and where the formulation does not require Lagrange multipliers to set up the usual transmission conditions on the interface. The stability and well-posedness of the continuous and semi-discrete problems are analysed in detail. Our numerical study is framed in the context of applicative problems pertaining to heterogeneous geophysical flows and to eye poromechanics. For the latter, we investigate different interfacial flow regimes in Cartesian and axisymmetric coordinates that could eventually help describe early morphologic changes associated with glaucoma development in canine species.

math.NA↗

arXiv2021

Coupling Stokes flow with inhomogeneous poroelasticity

We investigate the behaviour of flux-driven flow through a single-phase fluid domain coupled to a biphasic poroelastic domain. The fluid domain consists of an incompressible Newtonian viscous fluid while the poroelastic domain consists of a linearly elastic solid filled with the same viscous fluid. The material properties of the poroelastic domain, i.e. permeability and elastic parameters, depend on the inhomogeneous initial porosity field. We identify the dimensionless parameters governing the behaviour of the coupled problem: the ratio between the magnitudes of the driving velocity and the Darcy flows in the poroelastic domain, and the ratio between the viscous pressure scale and the size of the elastic stresses in the poroelastic domain. We consider a perfusion system, where flow is forced to pass from the single-phase fluid to the biphasic poroelastic domain. We focus on a simplified two dimensional geometry with small aspect ratio, and perform an asymptotic analysis to derive analytical solutions. The slender geometry is divided in four regions, two outer domains that describe the regions away from the interface and two inner domains that are the regions across the interface. Our analysis advances the quantitative understanding of the role of heterogeneous material properties of a poroelastic domain on its mechanical response when coupled with a fluid domain. The analysis reveals that, in the interfacial zone, the fluid and the elastic behaviours of this coupled Stokes - poroelastic problem can be treated separately via (i) a Stokes - Darcy coupling and (ii) the solid skeleton being stress free.

physics.flu-dyn↗

arXiv2021

Twofold saddle-point formulation of Biot poroelasticity with stress-dependent diffusion

We introduce a stress/total-pressure formulation for poroelasticity that includes the coupling with steady nonlinear diffusion modified by stress. The nonlinear problem is written in mixed-primal form, coupling a perturbed twofold saddle-point system with an elliptic problem. The continuous formulation is analysed in the framework of abstract fixed-point theory and Fredholm alternative for compact operators. A mixed finite element method is proposed and its stability and convergence analysis are carried out. We also include a few illustrative numerical tests. The resulting model can be used to study waste removal in the brain parenchyma, where diffusion of a tracer alone or a combination of advection and diffusion are not sufficient to explain the alterations in rates of filtration observed in porous media samples.

math.NA↗

arXiv2021

Robust a posteriori error analysis for rotation-based formulations of the elasticity/poroelasticity coupling

We develop the \textit{a posteriori} error analysis of three mixed finite element formulations for rotation-based equations in elasticity, poroelasticity, and interfacial elasticity-poroelasticity. The discretisations use $H^1$-conforming finite elements of degree $k+1$ for displacement and fluid pressure, and discontinuous piecewise polynomials of degree $k$ for rotation vector, total pressure, and elastic pressure. Residual-based estimators are constructed, and upper and lower bounds (up to data oscillations) for all global estimators are rigorously derived. The methods are all robust with respect to the model parameters (in particular, the Lamé constants), they are valid in 2D and 3D, and also for arbitrary polynomial degree $k\geq 0$. The error behaviour predicted by the theoretical analysis is then demonstrated numerically on a set of computational examples including different geometries on which we perform adaptive mesh refinement guided by the \textit{a posteriori} error estimators.

math.NA↗

arXiv2021

Divergence-conforming methods for transient doubly-diffusive flows: A priori and a posteriori error analysis

The analysis of the double-diffusion model and $\mathbf{H}(\mathrm{div})$-conforming method introduced in [Bürger, Méndez, Ruiz-Baier, SINUM (2019), 57:1318--1343] is extended to the time-dependent case. In addition, the efficiency and reliability analysis of residual-based {\it a posteriori} error estimators for the steady, semi-discrete, and fully discrete problems is established. The resulting methods are applied to simulate the sedimentation of small particles in salinity-driven flows. The method consists of Brezzi-Douglas-Marini approximations for velocity and compatible piecewise discontinuous pressures, whereas Lagrangian elements are used for concentration and salinity distribution. Numerical tests confirm the properties of the proposed family of schemes and of the adaptive strategy guided by the {\it a posteriori} error indicators.

math.NA↗

arXiv2021

Numerical analysis of a new formulation for the Oseen equations in terms of vorticity and Bernoulli pressure

A variational formulation is introduced for the Oseen equations written in terms of vor\-ti\-city and Bernoulli pressure. The velocity is fully decoupled using the momentum balance equation, and it is later recovered by a post-process. A finite element method is also proposed, consisting in equal-order Nédélec finite elements and piecewise continuous polynomials for the vorticity and the Bernoulli pressure, respectively. The {\it a priori} error analysis is carried out in the $\mathrm{L}^2$-norm for vorticity, pressure, and velocity; under a smallness assumption either on the convecting velocity, or on the mesh parameter. Furthermore, an {\it a posteriori} error estimator is designed and its robustness and efficiency are studied using weighted norms. Finally, a set of numerical examples in 2D and 3D is given, where the error indicator serves to guide adaptive mesh refinement. These tests illustrate the behaviour of the new formulation in typical flow conditions, and they also confirm the theoretical findings.

math.NA↗

arXiv2021

Velocity-vorticity-pressure formulation for the Oseen problem with variable viscosity

We propose and analyse an augmented mixed finite element method for the Oseen equations written in terms of velocity, vorticity, and pressure with non-constant viscosity and homogeneous Dirichlet boundary condition for the velocity. The weak formulation includes least-squares terms arising from the constitutive equation and from the incompressibility condition, and we show that it satisfies the hypotheses of the Babu\vska-Brezzi theory. Repeating the arguments of the continuous analysis, the stability and solvability of the discrete problem are established. The method is suited for any Stokes inf-sup stable finite element pair for velocity and pressure, while for vorticity any generic discrete space (of arbitrary order) can be used. A priori and a posteriori error estimates are derived using two specific families of discrete subspaces. Finally, we provide a set of numerical tests illustrating the behaviour of the scheme, verifying the theoretical convergence rates, and showing the performance of the adaptive algorithm guided by residual a posteriori error estimation.

math.NA↗

arXiv2021

Conforming, nonconforming and DG methods for the stationary generalized Burgers- Huxley equation

In this work we address the analysis of the stationary generalized Burgers-Huxley equation (a nonlinear elliptic problem with anomalous advection) and propose conforming, nonconforming and discontinuous Galerkin finite element methods for its numerical approximation. The existence, uniqueness and regularity of weak solutions is discussed in detail using a Faedo-Galerkin approach and fixed-point theory, and a priori error estimates for all three types of numerical schemes are rigorously derived. A set of computational results are presented to show the efficacy of the proposed methods.

math.NA↗

arXiv2020

Robust preconditioners for perturbed saddle-point problems and conservative discretizations of Biot's equations utilizing total pressure

We develop robust solvers for a class of perturbed saddle-point problems arising in the study of a second-order elliptic equation in mixed form (in terms of flux and potential), and of the four-field formulation of Biot's consolidation problem for linear poroelasticity (using displacement, filtration flux, total pressure and fluid pressure). The stability of the continuous variational mixed problems, which hinges upon using adequately weighted spaces, is addressed in detail; and the efficacy of the proposed preconditioners, as well as their robustness with respect to relevant material properties, is demonstrated through several numerical experiments.

math.NA↗

arXiv2020

Stability analysis for a new model of multispecies convection-diffusion-reaction in poroelastic tissue

We perform the linear stability analysis for a new model for poromechanical processes with inertia (formulated in mixed form using the solid deformation, fluid pressure, and total pressure) interacting with diffusing and reacting solutes convected in the medium. We find parameter regions that lead to spatio-temporal instabilities of the coupled system. The mutual dependences between deformation and diffusive patterns are of substantial relevance in the study of morphoelastic changes in biomaterials. We provide a set of computational examples in 2D and 3D (related to brain mechanobiology) that can be used to form a better understanding on how, and up to which extent, the deformations of the porous structure dictate the generation and suppression of spatial patterning dynamics, also related to the onset of mechano-chemical waves.

math.NA↗

arXiv2020

Well-posedness and discrete analysis for advection-diffusion-reaction in poroelastic media

We analyse a PDE system modelling poromechanical processes (formulated in mixed form using the solid deformation, fluid pressure, and total pressure) interacting with diffusing and reacting solutes in the medium. We investigate the well-posedness of the nonlinear set of equations using fixed-point theory, Fredholm's alternative, a priori estimates, and compactness arguments. We also propose a mixed finite element method and rigorously demonstrate the stability of the scheme. Error estimates are derived in suitable norms, and numerical experiments are conducted to illustrate the mechano-chemical coupling and to verify the theoretical rates of convergence.

math.NA↗

arXiv2019

Virtual element methods for the three-field formulation of time-dependent linear poroelasticity

A virtual element discretisation for the numerical approximation of the three-field formulation of linear poroelasticity introduced in [R. Oyarzúa and R. Ruiz-Baier, Locking-free finite element methods for poroelasticity, SIAM J. Numer. Anal. 54 (2016) 2951--2973] is proposed. The treatment is extended to include also the transient case. Appropriate poroelasticity projector operators are introduced and they assist in deriving energy bounds for the time-dependent discrete problem. Under standard assumptions on the computational domain, optimal a priori error estimates are established. Furthermore, the accuracy of the method is verified numerically through a set of computational tests.

math.NA↗

arXiv2019

An orthotropic electro-viscoelastic model for the heart with stress-assisted diffusion

We propose and analyse the properties of a new class of models for the electromechanics of cardiac tissue. The set of governing equations consists of nonlinear elasticity using a viscoelastic and orthotropic exponential constitutive law (this is so for both active stress and active strain formulations of active mechanics) coupled with a four-variable phenomenological model for human cardiac cell electrophysiology, which produces an accurate description of the action potential. The conductivities in the model of electric propagation are modified according to stress, inducing an additional degree of nonlinearity and anisotropy in the coupling mechanisms; and the activation model assumes a simplified stretch-calcium interaction generating active tension or active strain. The influence of the new terms in the electromechanical model is evaluated through a sensitivity analysis, and we provide numerical validation through a set of computational tests using a novel mixed-primal finite element scheme.

math.NA↗