arXiv subjects

Riccardo Conte

Publications and source records attributed to Riccardo Conte.

At least 19 recordsLinked to original sources

arXiv2026

Refusal Before Decoding: Detecting and Exploiting Refusal Signals in Intermediate LLM Activations

In this paper, we investigate whether refusal behavior can be predicted from LLM intermediate activations before decoding using linear probes trained on residual stream activations at each transformer block. We find that refusal is linearly decodable well before the final layer, indicating that safety-relevant behavior is represented in intermediate activations before output generation. To test whether this signal is actionable, we introduce Mechanistic AutoDAN, a probe-guided variant of AutoDAN that replaces full-model fitness evaluation with partial forward passes and probe-based scoring inside a genetic prompt search loop. Across the evaluated models, our method achieves attack success rates competitive with vanilla AutoDAN while reducing per-iteration search time by up to 72%, and probe-guided prompts match or exceed AutoDAN's cross-model transfer in several configurations. We further find that the usefulness of probe guidance increases with model scale. Our results suggest that refusal-relevant information is decodable from intermediate activations and can serve as an effective search signal in an AutoDAN-style discrete jailbreak optimization loop, especially for larger and more robust models.

cs.AI↗

arXiv2026

Memristive Switches in Rigid Conjugated Single-Molecule Junctions

Voltage-driven memristive switching has been reported in molecular junctions, yet its microscopic origin often remains elusive. Here, we study three rigid OPE-like derivatives that lack an obvious internal switching pathway using mechanically controlled break junctions (MCBJs) and observe non-volatile, bistable hysteretic IV characteristics at cryogenic temperature. We introduce a quantitative analysis workflow that classifies memristive IVs, clusters the two conductance states, and extracts switching features and stability metrics from repeated measurements at fixed displacement. While all molecules exhibit memristive behavior, stability and hysteresis reproducibility depend strongly on anchoring and connectivity: the linear biphenyl backbone with thiolate (SAc) anchoring shows the most reproducible, predominantly field-driven hysteresis, whereas the meta-phenyl variant with thioether (SMe) anchoring is dominated by stochastic, current-driven events. The resulting conductance statistics point to an extrinsic, mechanically mediated origin involving contact rearrangements, multi-molecule transport, blinking (open-closed) contacts, injection-point shifts, and $\pi$-$\pi$-stacking dimerization.

cond-mat.mes-hall↗

arXiv2025

"Gold-Standard" $\Delta$-Machine Learned and Transferable Potential for Linear Alkanes

The conformational properties of linear alkanes, C$_n$H$_{2n+2}$, have been of intense interest for many years. Experiments and corresponding electronic structure calculations were first reported in the mid-2000s and continue to the present time. These focus on the minimum chain length where the transition from the linear minimum to the hairpin minimum occurs. We recently reported a transferable many-body permutationally invariant polynomial (MB-PIP) for linear alkanes using B3LYP electronic energies, which do not account for dispersion. Here we report a $\Delta$-ML approach to elevate this B3LYP-based and new PBE0+MBD MB-PIP potentials using PNO-LCCSD(T)-F12 energies. The new $\Delta$-corrected potentials predict the difference in these minima accurately, compared to benchmark CCSD(T) results, over the range C$_{12}$H$_{28}$ to C$_{28}$H$_{58}$. Vibrational power spectra are also reported for C$_{14}$H$_{30}$ and C$_{30}$H$_{62}$ using the uncorrected and $\Delta$-ML B3LYP. These new PIP-MB potentials for linear alkanes are the most accurate ones currently available and can be used in studies of properties of linear alkanes.

physics.chem-ph↗

arXiv2025

A Single-Molecule Quantum Heat Engine

Particle-exchange heat engines operate without moving parts or time-dependent driving, relying solely on static energy-selective transport. Here, we realize a particle-exchange quantum heat engine based on a single diradical molecule, only a few nanometers in size. We experimentally investigate its operation at low temperatures and demonstrate that both the power output and efficiency are significantly enhanced by Kondo correlations, reaching up to 53 % of the Curzon-Ahlborn limit. These results establish molecular-scale particle-exchange engines as promising candidates for low-temperature applications where extreme miniaturization and energy efficiency are paramount.

cond-mat.mes-hall↗

arXiv2025

The quantum nature of ubiquitous vibrational features revealed for ethylene glycol

Vibrational properties of molecules are of widespread interest and importance in chemistry and biochemistry. The reliability of widely employed approximate computational methods is questioned here against the complex experimental spectrum of ethylene glycol. Comparisons between quantum vibrational self-consistent field and virtual-state configuration interaction (VSCF/VCI), adiabatically switched semiclassical initial value representation (AS SCIVR), and thermostatted ring polymer molecular dynamics (TRPMD) calculations are made using a full-dimensional machine-learned potential energy surface. Calculations are done for five low-lying conformers and compared with the experiment, with a focus on the high-frequency, OH-stretches, and CH-stretches, part of the spectrum. Fermi resonances are found in the analysis of VSCF/VCI eigenstates belonging to the CH-stretching band. Results of comparable accuracy, quality, and level of detail are obtained by means of AS SCIVR. The current VSCF/VCI and AS-SCIVR power spectra largely close the gaps between the experiment and TRPMD and classical MD calculations. Analysis of these results provide guidance on what level of accuracy to expect from TRPMD and classical MD calculations of the vibrational spectra for ubiquitous CH and OH-stretches bands. This work shows that even general vibrational features require a proper quantum treatment usually not achievable by the most popular theoretical approaches.

physics.chem-ph↗

arXiv2024

Extending the atomic decomposition and many-body representation, a chemistry-motivated monomer-centered approach for machine learning potentials

Most widely used machine learned (ML) potentials for condensed phase applications rely on many-body permutationally invariant polynomial (PIP) or atom-centered neural networks (NN). However, these approaches often lack chemical interpretability in atomistic energy decomposition and the computational efficiency of traditional force fields has not been fully achieved. Here, we present a novel method that combines aspects of both approaches, and achieves state-of-the-art balance of accuracy and force field-level speed. This method utilizes a monomer-centered representation, where the potential energy is decomposed into the sum of chemically meaningful monomeric energies. Without sophisticated neural network design, the structural descriptors of monomers are described by 1-body and 2-body effective interactions, enforced by appropriate sets of PIPs as inputs to the feed forward NN. We demonstrate the performance of this method through systematic assessments of models for gas-phase water trimer, liquid water, and also liquid CO2. The high accuracy, fast speed, and flexibility of this method provide a new route for constructing accurate ML potentials and enabling large-scale quantum and classical simulations for complex molecular systems.

physics.chem-ph↗

arXiv2024

Can We Learn the Energy of Sublimation of Ice from Water Clusters?

This short paper reports a study of the electronic dissociation energies, De, of water clusters from direct ab initio (mostly CCSD(T)) calculations and the q-AQUA and MB-pol potentials. These clusters range in size from 6-25 monomers. These are all in very good agreement with each other, as shown in a recent Perspective by Herman and Xantheas. To the best of our knowledge, we present for the first time results for the De per monomer. To our surprise this quantity appears to be converging to a value close to 12 kcal/mol. An estimate of 1.5 - 2 kcal/mol for the {\Delta}ZPE for these clusters puts the value of D0 at 10 to 10.5 kcal/mol. This value is remarkably (and probably fortuitously) close to the reported sublimation enthalpy of 10.2 kcal/mol at 10 K. However, given that these De energies correspond to dissociation of the cluster to N isolated monomers the interpretation of ``vaporization" of these ``solid" clusters is qualitatively reasonable.

physics.chem-ph↗

arXiv2024

$\Delta$-Machine Learning to Elevate DFT-based Potentials and a Force Field to the CCSD(T) Level Illustrated for Ethanol

Progress in machine learning has facilitated the development of potentials that offer both the accuracy of first-principles techniques and vast increases in the speed of evaluation. Recently,"$\Delta$-machine learning" has been used to elevate the quality of a potential energy surface (PES) based on low-level, e.g., density functional theory (DFT) energies and gradients to close to the gold-standard coupled cluster level of accuracy. We have demonstrated the success of this approach for molecules, ranging in size from H$_3$O$^+$ to 15-atom acetyl-acetone and tropolone. These were all done using the B3LYP functional. Here we investigate the generality of this approach for the PBE, M06, M06-2X, and PBE0+MBD functionals, using ethanol as the example molecule. Linear regression with permutationally invariant polynomials is used to fit both low-level and correction PESs. These PESs are employed for standard RMSE analysis for training and test datasets, and then general fidelity tests such as energetics of stationary points, normal mode frequencies, and torsional potentials are examined. We achieve similar improvements in all cases. Interestingly, we obtained significant improvement over DFT gradients where coupled cluster gradients were not used to correct the low-level PES. Finally, we present some results for correcting a recent molecular mechanics force field for ethanol and comment on the possible generality of this approach.

physics.chem-ph↗

arXiv2024

Tell machine learning potentials what they are needed for: Simulation-oriented training exemplified for glycine

Machine learning potentials (MLPs) are widely applied as an efficient alternative way to represent potential energy surfaces (PES) in many chemical simulations. The MLPs are often evaluated with the root-mean-square errors on the test set drawn from the same distribution as the training data. Here, we systematically investigate the relationship between such test errors and the simulation accuracy with MLPs on an example of a full-dimensional, global PES for the glycine amino acid. Our results show that the errors in the test set do not unambiguously reflect the MLP performance in different simulation tasks such as relative conformer energies, barriers, vibrational levels, and zero-point vibrational energies. We also offer an easily accessible solution for improving the MLP quality in a simulation-oriented manner, yielding the most precise relative conformer energies and barriers. This solution also passed the stringent test by the diffusion Monte Carlo simulations.

physics.chem-ph↗

arXiv2024

Impact of spin-entropy on the thermoelectric properties of a 2D magnet

Heat-to-charge conversion efficiency of thermoelectric materials is closely linked to the entropy per charge carrier. Thus, magnetic materials are promising building blocks for highly efficient energy harvesters, as their carrier entropy is boosted by a spin degree of freedom. In this work, we investigate how this spin entropy impacts heat-to-charge conversion in A-type antiferromagnet CrSBr. We perform simultaneous measurements of electrical conductance and thermocurrent while changing magnetic order using temperature and magnetic field as tuning parameters. We find a strong enhancement of the thermoelectric power factor around the N\'eel temperature. We further reveal that the power factor at low temperature can be increased by up to 600% upon applying a magnetic field. Our results demonstrate that the thermoelectric properties of 2D magnets can be optimized by exploiting the sizeable impact of spin entropy and confirm thermoelectric measurements as a sensitive tool to investigate subtle magnetic phase transitions in low-dimensional magnets.

cond-mat.mes-hall↗

arXiv2024

Assessing PIP and sGDML Potential Energy Surfaces for H3O2-

Here we assess two machine-learned potentials, one using the symmetric gradient domain machine learning (sGDML) method and one based on permutationally invariant polynomials (PIPs). These are successors to a PIP potential energy surface (PES) reported in 2004. We describe the details of both fitting methods and then compare the two PESs with respect to precision, properties, and speed of evaluation. While the precision of the potentials is similar, the PIP PES is much faster to evaluate for energies and energies plus gradient than the sGDML one. Diffusion Monte Carlo calculations of the ground vibrational state, using both potentials, produce similar large anharmonic downshift of the zero-point energy compared to the harmonic approximation the PIP and sGDML potentials. The computational time for these calculations using the sGDML PES is roughly 300 times greater than using the PIP one.

physics.chem-ph↗

arXiv2024

No Headache for PIPs: A PIP Potential for Aspirin Outperforms Other Machine-Learned Potentials

Assessments of machine-learned (ML) potentials are an important aspect of the rapid development of this field. We recently reported an assessment of the linear-regression permutationally invariant polynomial (PIP) method for ethanol, using the widely used (revised) MD17 dataset. We demonstrated that the PIP approach outperformed numerous other methods, e.g., ANI, PhysNet, sGDML, p-KRR, with respect to precision and notably with respect to speed [Houston $et$ $al$., $J. Chem. Phys.$ 2022, 156, 044120.]. Here we extend this assessment to the 21-atom aspirin molecule, using the rMD17 dataset. Both energies and forces are used for training and the precision of several PIPs is examined for both. Normal mode frequencies, the methyl torsional potential, and 1d vibrational energies for an OH stretch are presented. Overall, we show that the PIPs approach outperforms other ML methods, including sGDML, ANI, GAP, PhysNet, and ACE, as reported by Kov\'acs $et$ $al.$ in $J. Chem. Theory$ $Comput.$ 2021, 17, 7696-7711.

physics.chem-ph↗

arXiv2022

Quantum calculations on a new CCSD(T) machine-learned PES reveal the leaky nature of gas-phase $trans$ and $gauche$ ethanol conformers

Ethanol is a molecule of fundamental interest in combustion, astrochemistry, and condensed phase as a solvent. It is characterized by two methyl rotors and $trans$ ($anti$) and $gauche$ conformers, which are known to be very close in energy. Here we show that based on rigorous quantum calculations of the vibrational zero-point state, using a new ab initio potential energy surface (PES), the ground state resembles the $trans$ conformer but substantial delocalization to the $gauche$ conformer is present. This explains experimental issues about the identification and isolation of the two conformers. This "leak" effect is partially quenched when deuterating the OH group, which further demonstrates the need for a quantum mechanical approach. Diffusion Monte Carlo (DMC) and full-dimensional semiclassical dynamics calculations are employed. The new PES is obtained by means of a $Δ$-Machine learning approach starting from a pre-existing low level (LL) density functional theory (DFT) surface. This surface is brought to the CCSD(T) level of theory using a relatively small number of $ab$ $initio$ CCSD(T) energies. Agreement between the corrected PES and direct $ab$ $initio$ results for standard fidelity tests is excellent. One- and two-dimensional discrete variable representation calculations focusing on the $trans$-$gauche$ torsional motion are also reported, in reasonable agreement with the experiment.

physics.chem-ph↗

arXiv2022

A $\Delta$-Machine Learning Approach for Force Fields, Illustrated by a CCSD(T) 4-body Correction to the MB-pol Water Potential

$\Delta$-Machine Learning ($\Delta$-ML) has been shown to effectively and efficiently bring a low-level ML potential energy surface to CCSD(T) quality. Here we propose extending this approach to general force fields, which implicitly or explicitly contain many-body effects. After describing this general approach, we illustrate it for the MB-pol water potential which contains CCSD(T) 2-body and 3-body interactions but relies on the TTM4-F 4-body and higher body interactions. The 4-body MB-pol (TTM4-F) interaction fails at a very short range and for the water hexamer errors up to 0.84 kcal/mol are seen for some isomers, owing mainly to 4-body errors. We apply $\Delta$-ML for the 4-body interaction, using a recent dataset of CCSD(T) 4-body energies that we used to develop a new water potential, q-AQUA. This 4-body correction is shown to improve the accuracy of the MB-pol potential for the relative energies of 8 isomers of the water hexamer as well as the harmonic frequencies. The new potential is robust in the very short range and so should be reliable for simulations at high pressure and/or high temperature.

physics.chem-ph↗

arXiv2022

q-AQUA: a many-body CCSD(T) water potential, including 4-body interactions, demonstrates the quantum nature of water from clusters to the liquid phase

Many model potential energy surfaces (PESs) have been reported for water; however, none are strictly from "first principles". Here we report such a potential, based on a many-body representation at the CCSD(T) level of theory up to the ultimate 4-body interaction. The new PES is benchmarked for the isomers of the water hexamer for dissociation energies, harmonic frequencies, and unrestricted diffusion Monte Carlo (DMC) calculations of the zero-point energies of the Prism, Book, and Cage isomers. Dissociation energies of several isomers of the 20-mer agree well with recent benchmark energies. Exploratory DMC calculations on this cluster verify the robustness of the new PES for quantum simulations. The accuracy and speed of the new PES are demonstrated for standard condensed phase properties, i.e., the radial distribution function and the self-diffusion constant. Quantum effects are shown to be substantial for these observables and also needed to bring theory into an excellent agreement with experiment.

physics.chem-ph↗

arXiv2021

Permutationally invariant polynomial regression for energies and gradients, using reverse differentiation, achieves orders of magnitude speed-up with high precision compared to other machine learning methods

Permutationally invariant polynomial (PIP) regression has been used to obtain machine-learned (ML) potential energy surfaces, including analytical gradients, for many molecules and chemical reactions. Recently, the approach has been extended to moderate size molecules and applied to systems up to 15 atoms. The algorithm, including "purification of the basis", is computationally efficient for energies; however, we found that the recent extension to obtain analytical gradients, despite being a remarkable advance over previous methods, could be further improved. Here we report developments to compact further a purified basis and, more significantly, to use the reverse gradient approach to greatly speed up gradient evaluation. We demonstrate this for our recent 4-body water interaction potential. Comparisons of training and testing precision on the MD17 database of energies and gradients (forces) for ethanol against GP-SOAP, ANI, sGDML, PhysNet, pKREG, KRR, and other methods, which were recently assessed by Dral and co-workers, are given. The PIP fits are as precise as those using these methods, but the PIP computation time for energy and force evaluation is shown to be 10 to 1000 times faster. Finally, a new PIP PES is reported for ethanol based on a more extensive dataset of energies and gradients than in the MD17 database. Diffusion Monte Carlo calculations which fail on MD17-based PESs are successful using the new PES.

physics.chem-ph↗

arXiv2021

A CCSD(T)-based permutationally invariant polynomial 4-body potential for water

We report a permutationally invariant polynomial (PIP) potential energy surface for the water 4-body interaction. This 12-atom PES is a fit to 2119, symmetry-unique, CCSD(T)-F12a/haTZ (aug-cc-pVTZ basis for 'O' atom and cc-pVTZ basis for 'H' atom) 4-b interaction energies. These come from low-level, direct-dynamics calculations, tetramer fragments from an MD water simulation at 300 K, and from the water hexamer, heptamer, decamer, and 13-mer clusters. The PIP basis is purified to ensure that the 4-b potential goes rigorously to zero in monomer+trimer and dimer+dimer dissociations for all possible such fragments. The 4-b energies of isomers of the hexamer calculated with the new surface are shown to be in better agreement with benchmark CCSD(T) results than those from the MB-pol potential. Other tests validate the high-fidelity of the PES.

physics.chem-ph↗

arXiv2021

Breaking the Coupled Cluster Barrier for Machine Learned Potentials of Large Molecules: The Case of 15-atom Acetylacetone

Machine-learned potential energy surfaces (PESs) for molecules with more than 10 atoms are typically forced to use lower-level electronic structure methods such as density functional theory and second-order Moller-Plesset perturbation theory (MP2). While these are efficient and realistic, they fall short of the accuracy of the ``gold standard'' coupled-cluster method, especially with respect to reaction and isomerization barriers. We report a major step forward in applying a $Δ$-machine learning method to the challenging case of acetylacetone, whose MP2 barrier height for H-atom transfer is low by roughly 1.5 kcal/mol relative to the benchmark CCSD(T) barrier of 3.2 kcal/mol. From a database of 2151 local CCSD(T) energies, and training with as few as 430 energies, we obtain a new PES with a barrier of 3.49 kcal/mol in agreement with the LCCSD(T) one of 3.54 kcal/mol and close to the benchmark value. Tunneling splittings due to H-atom transfer are calculated using this new PES, providing improved estimates over previous ones obtained using an MP2-based PES.

physics.chem-ph↗