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Richard Gast

Publications and source records attributed to Richard Gast.

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Local connectivity balance shapes population dynamics in random recurrent networks

Disordered dynamical systems comprising many interacting units, from ecological communities to neural circuits, are ubiquitous, and understanding how connectivity shapes their collective behavior is a central theoretical challenge. One long-recognized feature of neural circuits is local connectivity balance, in which the excitatory and inhibitory weights converging onto each unit approximately cancel. Although local connectivity balance has been proposed to serve functions such as gating incoming signals, its effect on collective network dynamics remains unclear. Here we analytically study randomly connected recurrent networks with varying degrees of local connectivity balance. We show that this balance leaves the connectivity spectrum unchanged yet drastically reshapes the dynamics in a manner that depends critically on the single-unit nonlinearity. Local balance suppresses unbounded growth of the network state and stabilizes network dynamics when the activation function scales linearly or faster, whereas it drives the network into chaos when the activation function is sub-linear or saturating. Importantly, these effects vanish for odd activation functions, which are commonly assumed in previous work. We further find that, for saturating nonlinearities, the effective dimension of the dynamics varies nonmonotonically with the degree of balance. We show that all these phenomena arise from a unifying mechanism: the suppression of a self-generated feedback input by local connectivity balance. Our results identify local connectivity balance as a previously overlooked control parameter for collective dynamics in realistic disordered networks.

q-bio.NC

A multi-ensemble mean-field reduction method for networks of globally coupled phase oscillators with arbitrary parameter distributions

Understanding the dynamical properties of coupled phase oscillator systems with heterogeneous oscillator frequencies has been a long-standing challenge of complex systems theory. While the seminal work of Ott and Antonsen dramatically improved our theoretical understanding of coupled phase oscillators for a small family of oscillator frequency distributions, we here present a mean-field reduction method for arbitrary frequency distributions. Our method leverages the drastic dimensionality reduction obtained for Lorentzian frequency distributions, and combines it with a data-driven multi-ensemble approach. As such, the method renders the Ott-Antonsen equations directly applicable to empirical distributions of phase oscillator frequencies, often achieving a drastic dimensionality reduction and allowing to study real-world physical and biological systems by means of stability, sensitivity, and bifurcation analyses.

cond-mat.dis-nn

Direct and retrograde signal propagation in unidirectionally coupled Wilson-Cowan oscillators

Certain biological systems exhibit both direct and retrograde propagating wave signals, despite unidirectional neural coupling. However, there is no model to explain this. Therefore, the underlying physics of reversing the signal's direction for one-way coupling remains unclear. Here, we resolve this issue using a Wilson-Cowan oscillators network. By analyzing the limit cycle period of various coupling configurations, we determine that intrinsic frequency differences among oscillators control wave directionality.

physics.bio-ph

PyRates -- A Code-Generation Tool for Dynamical Systems Modeling

Mathematical models allow us to gain a deeper understanding of real-world dynamical systems. One of the most powerful mathematical frameworks for modeling real-world phenomena are systems of differential equations. In the majority of fields that use differential equations, numerical methods are essential for conducting model-based research. Although many software solutions are available for the numerical study of differential equation systems, a common framework for implementing differential equation systems is lacking. This hinders progress in dynamical systems research and limits the shareability and reproducibility of results. PyRates is a Python-based software for modeling and analyzing dynamical systems. It provides a user-friendly interface for defining models, which is based on a graph-based, hierarchical structure that mirrors the modular organization of real-world dynamical systems. This design allows users to leverage the hierarchical structure of their systems and create their models with minimal effort. Importantly, the core of PyRates is a versatile code-generation system, which can translate user-defined models into "backend" implementations in various languages, including Python, Fortran, and Julia. This allows users to access a wide range of analysis methods for dynamical systems, eliminating the need for manual translation between code bases. We demonstrate PyRates's capabilities in three use cases, where it generates NumPy code for numerical simulations, Fortran code for bifurcation analysis, and PyTorch code for neural network optimization. Finally, PyRates can be used as a model definition interface for the creation of new dynamical systems tools. We developed two such software packages, PyCoBi and RectiPy, as extensions of PyRates for specific dynamical systems modeling applications.

cond-mat.dis-nn

Macroscopic Dynamics of Neural Networks with Heterogeneous Spiking Thresholds

Mean-field theory links the physiological properties of individual neurons to the emergent dynamics of neural population activity. These models provide an essential tool for studying brain function at different scales; however, for their application to neural populations on large scale, they need to account for differences between distinct neuron types. The Izhikevich single neuron model can account for a broad range of different neuron types and spiking patterns, thus rendering it an optimal candidate for a mean-field theoretic treatment of brain dynamics in heterogeneous networks. Here, we derive the mean-field equations for networks of all-to-all coupled Izhikevich neurons with heterogeneous spiking thresholds. Using methods from bifurcation theory, we examine the conditions under which the mean-field theory accurately predicts the dynamics of the Izhikevich neuron network. To this end, we focus on three important features of the Izhikevich model that are subject here to simplifying assumptions: (i) spike-frequency adaptation, (ii) the spike reset conditions, and (iii) the distribution of single-cell spike thresholds across neurons. Our results indicate that, while the mean-field model is not an exact model of the Izhikevich network dynamics, it faithfully captures its different dynamic regimes and phase transitions. We thus present a mean-field model that can represent different neuron types and spiking dynamics. The model is comprised of biophysical state variables and parameters, incorporates realistic spike resetting conditions, and accounts for heterogeneity in neural spiking thresholds. These features allow for a broad applicability of the model as well as for a direct comparison to experimental data.

q-bio.NC

Effects of Neural Heterogeneity on Spiking Neural Network Dynamics

The brain is composed of complex networks of interacting neurons that express considerable heterogeneity in their physiology and spiking characteristics. How does neural heterogeneity affect macroscopic neural dynamics and how does it contribute to neurodynamic functions? In this letter, we address these questions by studying the macroscopic dynamics of networks of heterogeneous Izhikevich neurons. We derive mean-field equations for these networks and examine how heterogeneity in the spiking thresholds of Izhikevich neurons affects the emergent macroscopic dynamics. Our results suggest that the level of heterogeneity of inhibitory populations controls resonance and hysteresis properties of systems of coupled excitatory and inhibitory neurons. Neural heterogeneity may thus serve as a means to control the dynamic repertoire of mesoscopic brain circuits.

q-bio.NC

Mean-field approximations of networks of spiking neurons with short-term synaptic plasticity

Low-dimensional descriptions of neural network dynamics are an effective tool for bridging different scales of organization of brain structure and function. Recent advances in deriving mean-field descriptions for networks of coupled oscillators have sparked the development of a new generation of neural mass models. Of notable interest are mean-field descriptions of all-to-all coupled quadratic integrate-and-fire (QIF) neurons, which have already seen numerous extensions and applications. These extensions include different forms of short-term adaptation (STA) considered to play an important role in generating and sustaining dynamic regimes of interest in the brain. It is an open question, however, whether the incorporation of pre-synaptic forms of synaptic plasticity driven by single neuron activity would still permit the derivation of mean-field equations using the same method. Here, we discuss this problem using an established model of short-term synaptic plasticity at the single neuron level, for which we present two different approaches for the derivation of the mean-field equations. We compare these models with a recently proposed mean-field approximation that assumes stochastic spike timings. In general, the latter fails to accurately reproduce the macroscopic activity in networks of deterministic QIF neurons with distributed parameters. We show that the mean-field models we propose provide a more accurate description of the network dynamics, although they are mathematically more involved. Using bifurcation analysis, we find that QIF networks with pre-synaptic short-term plasticity can express regimes of periodic bursting activity as well as bi-stable regimes. Together, we provide novel insight into the macroscopic effects of short-term synaptic plasticity in spiking neural networks, as well as two different mean-field descriptions for future investigations of such networks.

q-bio.NC