A Grid-enabled Interface to Condor for Interactive Analysis on Handheld and Resource-limited Devices
This paper was withdrawn by the authors.
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arXiv subjects
Richard McClatchey
Publications and source records attributed to Richard McClatchey.
Distributed Analysis and Load Balancing System for Grid Enabled Analysis on Hand-held devices using Multi-Agents Systems
Handheld devices, while growing rapidly, are inherently constrained and lack the capability of executing resource hungry applications. This paper presents the design and implementation of distributed analysis and load-balancing system for hand-held devices using multi-agents system. This system enables low resource mobile handheld devices to act as potential clients for Grid enabled applications and analysis environments. We propose a system, in which mobile agents will transport, schedule, execute and return results for heavy computational jobs submitted by handheld devices. Moreover, in this way, our system provides high throughput computing environment for hand-held devices.
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A Service-Based Approach for Managing Mammography Data
Grid-based technologies are emerging as a potential open-source standards-based solution for managing and collabo-rating distributed resources. In view of these new computing solutions, the Mammogrid project is developing a service-based and Grid-aware application which manages a Euro-pean-wide database of mammograms. Medical conditions such as breast cancer, and mammograms as images, are ex-tremely complex with many dimensions of variability across the population. An effective solution for the management of disparate mammogram data sources is a federation of autonomous multi-centre sites which transcends national boundaries. The Mammogrid solution utilizes the Grid tech-nologies to integrate geographically distributed data sets. The Mammogrid application will explore the potential of the Grid to support effective co-working among radiologists through-out the EU. This paper outlines the Mammogrid service-based approach in managing a federation of grid-connected mam-mography databases.
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Pattern Reification as the Basis for Description-Driven Systems
One of the main factors driving object-oriented software development for information systems is the requirement for systems to be tolerant to change. To address this issue in designing systems, this paper proposes a pattern-based, object-oriented, description-driven system (DDS) architecture as an extension to the standard UML four-layer meta-model. A DDS architecture is proposed in which aspects of both static and dynamic systems behavior can be captured via descriptive models and meta-models. The proposed architecture embodies four main elements - firstly, the adoption of a multi-layered meta-modeling architecture and reflective meta-level architecture, secondly the identification of four data modeling relationships that can be made explicit such that they can be modified dynamically, thirdly the identification of five design patterns which have emerged from practice and have proved essential in providing reusable building blocks for data management, and fourthly the encoding of the structural properties of the five design patterns by means of one fundamental pattern, the Graph pattern. A practical example of this philosophy, the CRISTAL project, is used to demonstrate the use of description-driven data objects to handle system evolution.
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MammoGrid: Large-Scale Distributed Mammogram Analysis
Breast cancer as a medical condition and mammograms as images exhibit many dimensions of variability across the population. Similarly, the way diagnostic systems are used and maintained by clinicians varies between imaging centres and breast screening programmes, and so does the appearance of the mammograms generated. A distributed database that reflects the spread of pathologies across the population is an invaluable tool for the epidemiologist and the understanding of the variation in image acquisition protocols is essential to a radiologist in a screening programme. Exploiting emerging grid technology, the aim of the MammoGrid [1] project is to develop a Europe-wide database of mammograms that will be used to investigate a set of important healthcare applications and to explore the potential of the grid to support effective co-working between healthcare professionals.
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An Integrated Approach for Extraction of Objects from XML and Transformation to Heterogeneous Object Oriented Databases
CERN's (European Organization for Nuclear Research) WISDOM project uses XML for the replication of data between different data repositories in a heterogeneous operating system environment. For exchanging data from Web-resident databases, the data needs to be transformed into XML and back to the database format. Many different approaches are employed to do this transformation. This paper addresses issues that make this job more efficient and robust than existing approaches. It incorporates the World Wide Web Consortium (W3C) XML Schema specification in the database-XML relationship. Incorporation of the XML Schema exhibits significant improvements in XML content usage and reduces the limitations of DTD-based database XML services. Secondly the paper explores the possibility of database independent transformation of data between XML and different databases. It proposes a standard XML format that every serialized object should follow. This makes it possible to use objects of heterogeneous database seamlessly using XML.
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A Use-Case Driven Approach in Requirements Engineering : The Mammogrid Project
We report on the application of the use-case modeling technique to identify and specify the user requirements of the MammoGrid project in an incremental and controlled iterative approach. Modeling has been carried out in close collaboration with clinicians and radiologists with no prior experience of use cases. The study reveals the advantages and limitations of applying this technique to requirements specification in the domains of breast cancer screening and mammography research, with implications for medical imaging more generally. In addition, this research has shown a return on investment in use-case modeling in shorter gaps between phases of the requirements engineering process. The qualitative result of this analysis leads us to propose that a use-case modeling approach may result in reducing the cycle of the requirements engineering process for medical imaging.
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Managing Evolving Business Workflows through the Capture of Descriptive Information
Business systems these days need to be agile to address the needs of a changing world. In particular the discipline of Enterprise Application Integration requires business process management to be highly reconfigurable with the ability to support dynamic workflows, inter-application integration and process reconfiguration. Basing EAI systems on model-resident or on a so-called description-driven approach enables aspects of flexibility, distribution, system evolution and integration to be addressed in a domain-independent manner. Such a system called CRISTAL is described in this paper with particular emphasis on its application to EAI problem domains. A practical example of the CRISTAL technology in the domain of manufacturing systems, called Agilium, is described to demonstrate the principles of model-driven system evolution and integration. The approach is compared to other model-driven development approaches such as the Model-Driven Architecture of the OMG and so-called Adaptive Object Models.
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The MammoGrid Project Grids Architecture
The aim of the recently EU-funded MammoGrid project is, in the light of emerging Grid technology, to develop a European-wide database of mammograms that will be used to develop a set of important healthcare applications and investigate the potential of this Grid to support effective co-working between healthcare professionals throughout the EU. The MammoGrid consortium intends to use a Grid model to enable distributed computing that spans national borders. This Grid infrastructure will be used for deploying novel algorithms as software directly developed or enhanced within the project. Using the MammoGrid clinicians will be able to harness the use of massive amounts of medical image data to perform epidemiological studies, advanced image processing, radiographic education and ultimately, tele-diagnosis over communities of medical "virtual organisations". This is achieved through the use of Grid-compliant services [1] for managing (versions of) massively distributed files of mammograms, for handling the distributed execution of mammograms analysis software, for the development of Grid-aware algorithms and for the sharing of resources between multiple collaborating medical centres. All this is delivered via a novel software and hardware information infrastructure that, in addition guarantees the integrity and security of the medical data. The MammoGrid implementation is based on AliEn, a Grid framework developed by the ALICE Collaboration. AliEn provides a virtual file catalogue that allows transparent access to distributed data-sets and provides top to bottom implementation of a lightweight Grid applicable to cases when handling of a large number of files is required. This paper details the architecture that will be implemented by the MammoGrid project.
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Using Self-Description to Handle Change in Systems
In the web age systems must be flexible, reconfigurable and adaptable in addition to being quick to develop. As a consequence, designing systems to cater for change is becoming not only desirable but required by industry. Allowing systems to be self-describing or description-driven is one way to enable these characteristics. To address the issue of evolvability in designing self-describing systems, this paper proposes a pattern-based, object-oriented, description-driven architecture. The proposed architecture embodies four pillars - first, the adoption of a multi-layered meta-modeling architecture and reflective meta-level architecture, second, the identification of four data modeling relationships that must be made explicit such that they can be examined and modified dynamically, third, the identification of five design patterns which have emerged from practice and have proved essential in providing reusable building blocks for data management, and fourth, the encoding of the structural properties of the five design patterns by means of one pattern, the Graph pattern. In this paper the fundamentals of the description-driven architecture are described - the multi-layered architecture and reflective meta-level architecture, remaining detail can be found in the cited references. A practical example of this architecture is described, demonstrating the use of description-driven data objects in handling system evolution.
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Querying Large Physics Data Sets Over an Information Grid
Optimising use of the Web (WWW) for LHC data analysis is a complex problem and illustrates the challenges arising from the integration of and computation across massive amounts of information distributed worldwide. Finding the right piece of information can, at times, be extremely time-consuming, if not impossible. So-called Grids have been proposed to facilitate LHC computing and many groups have embarked on studies of data replication, data migration and networking philosophies. Other aspects such as the role of 'middleware' for Grids are emerging as requiring research. This paper positions the need for appropriate middleware that enables users to resolve physics queries across massive data sets. It identifies the role of meta-data for query resolution and the importance of Information Grids for high-energy physics analysis rather than just Computational or Data Grids. This paper identifies software that is being implemented at CERN to enable the querying of very large collaborating HEP data-sets, initially being employed for the construction of CMS detectors.
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Meta-Data Objects as the Basis for System Evolution
One of the main factors driving object-oriented software development in the Web- age is the need for systems to evolve as user requirements change. A crucial factor in the creation of adaptable systems dealing with changing requirements is the suitability of the underlying technology in allowing the evolution of the system. A reflective system utilizes an open architecture where implicit system aspects are reified to become explicit first-class (meta-data) objects. These implicit system aspects are often fundamental structures which are inaccessible and immutable, and their reification as meta-data objects can serve as the basis for changes and extensions to the system, making it self- describing. To address the evolvability issue, this paper proposes a reflective architecture based on two orthogonal abstractions - model abstraction and information abstraction. In this architecture the modeling abstractions allow for the separation of the description meta-data from the system aspects they represent so that they can be managed and versioned independently, asynchronously and explicitly. A practical example of this philosophy, the CRISTAL project, is used to demonstrate the use of meta-data objects to handle system evolution.
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