SearcharxivSearch

arXiv subjects

Richard White

Publications and source records attributed to Richard White.

18 recordsLinked to original sources

Quantifying the effect of phenotype on clustering behaviour in melanoma: from monoculture to co-culture

Melanoma is an aggressive form of skin cancer. Survival rates are excellent if it is detected early but fall markedly if it metastasises. A key step in early tumour progression is the formation of cell clusters, which can promote metastasis. However, the mechanisms driving cell clustering, and the role of phenotypic heterogeneity in the dynamics of these clusters, remain poorly understood. In this work, we propose a system of ordinary differential equations that models cluster formation dynamics within a coagulation-fragmentation-proliferation framework. Using Bayesian inference, we fit this model to in vitro time-lapse microscopy data from two melanoma phenotypes-proliferative and invasive-to uncover the predominant mechanisms driving cluster formation and how these differ between phenotypes. Additionally, we provide preliminary insights into how clustering behaviour in co-cultures contrasts with that observed in monocultures. The model quantifies phenotypic differences in clustering dynamics: invasive cells in monoculture exhibit nearly threefold higher coagulation rates than proliferative cells, whereas proliferative cells display slightly higher proliferation rates. These differences align with known gene expression profiles. When applied to co-culture data, the model predicts hybrid coagulation behaviour of the clusters influenced by both proliferative and invasive cells but dominated by the invasive cells, and an elevated proliferation rate, suggesting a mutually beneficial effect of phenotypic heterogeneity on cell proliferation.

q-bio.CB

Design and Performance of the Upgraded Prototype Schwarzschild-Couder Telescope Camera Module

The Cherenkov Telescope Array Observatory (CTAO) is a ground-based observatory that will improve upon the sensitivities of the current generation of very-high-energy gamma-ray instruments. The Schwarzschild-Couder Telescope (SCT) is a dual-mirror candidate design for a CTAO Medium-Sized Telescope (MST). The prototype Schwarzschild-Couder Telescope (pSCT) was inaugurated in 2019 at Fred Lawrence Whipple Observatory (FLWO) in Arizona and observed significant gamma-ray emission from the Crab Nebula with a partially populated camera. The pSCT camera is currently being upgraded to fully instrument the focal plane with 11,328 silicon photomultiplier (SiPM) pixels split between 177 camera modules. Additionally, the modules will feature upgraded electronics designed to reduce electronics crosstalk and noise. A module calibration procedure has been developed using a preproduction test module. Following this calibration procedure, performance testing shows that the upgrade module has low noise, minimal electronics crosstalk, and excellent charge resolution. After calibration and optimization, the 177 production modules will be installed in the pSCT camera for commissioning. This will be followed by observations of known VHE gamma-ray sources for camera performance validation.

astro-ph.IM

CTC and CT5TEA: an advanced multi-channel digitizer and trigger ASIC for imaging atmospheric Cherenkov telescopes

We have developed a new set of Application-Specific Integrated Circuits (ASICs) of the TARGET family (CTC and CT5TEA), designed for the readout of signals from photosensors in cameras of Imaging Atmospheric Cherenkov Telescopes (IACTs) for ground-based gamma-ray astronomy. We present the performance and design details. Both ASICs feature 16 channels, with CTC being a Switched-Capacitor Array (SCA) sampler at 0.5 to 1 GSa/s with a 16,384 sample deep storage buffer, including the functionality to digitize full waveforms at arbitrary times. CT5TEA is its companion trigger ASIC (though may be used on its own), which provides trigger information for the analog sum of four (and 16) adjacent channels. Since sampling and triggering takes place in two separate ASICs, the noise due to interference from the SCA is suppressed, and allows a minimal trigger threshold of $\leq$ 2.5 mV (0.74 photo electrons (p.e.)) with a trigger noise of $\leq$ 0.5 mV (0.15 p.e.). For CTC, a maximal input voltage range from $-$0.5 V up to 1.7 V is achieved with an effective bit range of $>$ 11.6 bits and a baseline noise of 0.7 mV. The cross-talk improved to $\leq$ 1% over the whole $-$3 dB bandwidth of 220 MHz and even down to 0.2% for 1.5 V pulses of 10 ns width. Not only is the performance presented, but a temperature-stable calibration routine for pulse mode operation is introduced and validated. The resolution is found to be $\sim$ 2.5% at 33.7 mV (10 p.e.) and $\leq$ 0.3% at 337 mV (100 p.e.) with an integrated non-linearity of $<$ 1.6 mV. Developed for the Small-Sized Telescope (SST) and Schwarzschild-Couder Telescope (SCT) cameras of the Cherenkov Telescope Array Observatory (CTAO), CTC and CT5TEA are deployed for both prototypes and shall be integrated into the final versions.

astro-ph.IM

Evaluation of the effective mirror area of CTA Small-Sized Telescopes for camera design and Monte Carlo simulation

The effective mirror area of an imaging atmospheric Cherenkov telescope is a crucial key parameter for trigger threshold determination and energy calibration. It is usually calculated by 3D ray-tracing simulation using a simplified telescope model, and the result is used in Monte Carlo simulations. However, simplified telescope and camera models are not adequate for the Schwarzschild-Couder configuration to be used in Small-Sized Telescopes (SSTs) of the Cherenkov Telescope Array. This is because the complex 3D structure of the secondary mirror, telescope masts, and camera body block a significant fraction of Cherenkov and night-sky photons. To evaluate the effective mirror area of an SST and to finalize its camera body design with minimal shadowing, a complex 3D model was built and simulated using the ROBAST ray-tracing library. A camera body size of 570 mm and a window size of 430 mm were selected for the final camera design based on the evaluation of shadowing by simulation. A non-axisymmetric effective area distribution was determined via the modeling of the complex telescope structure, while meeting the SST effective area requirement.

astro-ph.IM

Probing cosmic ray escape from η Carinae

The binary stellar system $η$ Carinae is one of very few established astrophysical hadron accelerators. It seems likely that at least some fraction of the accelerated particles escape from the system. Copious target material for hadronic interactions and associated $γ$-ray emission exists on a wide range of spatial scales outside the binary system. This material creates a unique opportunity to trace the propagation of particles into the interstellar medium. Here we analyse $γ$-ray data from Fermi-LAT of $η$ Carinae and surrounding molecular clouds and investigate the many different scales on which escaping particles may interact and produce $γ$-rays. We find that interactions of escaping cosmic rays from $η$ Carinae in the wind region and the Homunculus Nebula could produce a significant contribution to the $γ$-ray emission associated with the system. Furthermore, we detect excess emission from the surrounding molecular clouds. The derived radial cosmic-ray excess profile is consistent with a steady injection of cosmic rays by a central source. However, this would require a higher flux of escaping cosmic rays from $η$ Carinae than provided by our model. Therefore it is likely that additional cosmic ray sources contribute to the hadronic $γ$-ray emission from the clouds.

astro-ph.HE

A Tale of 3 Dwarfs: No Extreme Cluster Formation in Extreme Star-Forming Galaxies

Nearly all current simulations predict that outcomes of the star formation process, such as the fraction of stars that form in bound clusters (Gamma), depend on the intensity of star formation activity (SigmaSFR) in the host galaxy. The exact shape and strength of the predicted correlations, however, vary from simulation to simulation. Observational results also remain unclear at this time, because most works have mixed estimates made from very young clusters for galaxies with higher SigmaSFR with those from older clusters for galaxies with lower SigmaSFR. The three blue compact dwarf (BCD) galaxies ESO185-IG13, ESO338-IG04, and Haro11 have played a central role on the observational side because they have some of the highest known SigmaSFR and published values of Gamma. We present new estimates of Gamma for these BCDs in three age intervals (1-10 Myr, 10-100 Myr, 100-400 Myr), based on age-dating which includes Halpha photometry to better discriminate between clusters younger and older than ~10 Myr. We find significantly lower values for Gamma (1-10 Myr) than published previously. The likely reason for the discrepancy is that previous estimates appear to be based on age-reddening results that underestimated ages and overestimated reddening for many clusters, artificially boosting Gamma (1-10 Myr). We also find that fewer stars remain in clusters over time, with ~15-39% in 1-10 Myr, ~5-7% in 10-100 Myr, and ~1-2% in 100-400 Myr clusters. We find no evidence that Gamma increases with SigmaSFR. These results imply that cluster formation efficiency does not vary with star formation intensity in the host galaxy. If confirmed, our results will help guide future assumptions in galaxy-scale simulations of cluster formation and evolution.

astro-ph.GA

Advanced Analysis of Night Sky Background Light for SSTCAM

Night Sky Background (NSB) is a complex phenomenon, consisting of all light detected by Imaging Atmospheric Cherenkov Telescopes (IACTs) not attributable to Cherenkov light emission. Understanding the effect of NSB on cameras for the next-generation Cherenkov Telescope Array (CTA) is important, as it affects the systematic errors on observations, the energy threshold, the thermal control of the cameras and the ability of the telescopes to operate under partial moonlight conditions. This capacity to observe under partial moonlight conditions is crucial for the CTA transient science programme, as it substantially increases the potential observing time. Using tools initially developed for H.E.S.S. (in combination withthe prototype CTA analysis package ctapipe) we will present predictions for the NSB present in images taken by the CTA Small Sized Telescope Camera (SSTCAM), showing that SSTCAM will likely be able to meet the associated CTA requirements. Additionally, we calculate the potential observing time gain by operating under high NSB conditions.

astro-ph.IM

Design and Performance of the Prototype Schwarzschild-Couder Telescope Camera

The prototype Schwarzschild-Couder Telescope (pSCT) is a candidate for a medium-sized telescope in the Cherenkov Telescope Array. The pSCT is based on a novel dual mirror optics design which reduces the plate scale and allows for the use of silicon photomultipliers as photodetectors. The prototype pSCT camera currently has only the central sector instrumented with 25 camera modules (1600 pixels), providing a 2.68$^{\circ}$ field of view (FoV). The camera electronics are based on custom TARGET (TeV array readout with GSa/s sampling and event trigger) application specific integrated circuits. Field programmable gate arrays sample incoming signals at a gigasample per second. A single backplane provides camera-wide triggers. An upgrade of the pSCT camera is in progress, which will fully populate the focal plane. This will increase the number of pixels to 11,328, the number of backplanes to 9, and the FoV to 8.04$^{\circ}$. Here we give a detailed description of the pSCT camera, including the basic concept, mechanical design, detectors, electronics, current status and first light.

astro-ph.IM

Performance Evaluation of Structured and Semi-Structured Bioinformatics Tools: A Comparative Study

There is a wide range of available biological databases developed by bioinformatics experts, employing different methods to extract biological data. In this paper, we investigate and evaluate the performance of some of these methods in terms of their ability to efficiently access bioinformatics databases using web-based interfaces. These methods retrieve bioinformatics information using structured and semi-structured data tools, which are able to retrieve data from remote database servers. This study distinguishes each of these approaches and contrasts these tools. We used Sequence Retrieval System (SRS) and Entrez search tools for structured data, while Perl and BioPerl search programs were used for semi-structured data to retrieve complex queries including a combination of text and numeric information. The study concludes that the use of semi-structured data tools for accessing bioinformatics databases is a viable alternative to the structured tools, though each method is shown to have certain inherent advantages and disadvantages.

cs.DB

A Comparison of Star-Forming Clumps and Tidal Tails in Local Mergers and High Redshift Galaxies

The Clusters, Clumps, Dust, and Gas in Extreme Star-Forming Galaxies (CCDG) survey with the Hubble Space Telescope includes multi-wavelength imaging of 13 galaxies less than 100 Mpc away spanning a range of morphologies and sizes, from Blue Compact Dwarfs (BCDs) to luminous infrared galaxies (LIRGs), all with star formation rates in excess of hundreds of solar masses per year. Images of 7 merging galaxies in the CCDG survey were artificially redshifted to compare with galaxies at z=0.5, 1, and 2. Most redshifted tails have surface brightnesses that would be visible at z=0.5 or 1 but not at z=2 due to cosmological dimming. Giant star clumps are apparent in these galaxies; the 51 measured have similar sizes, masses and colors as clumps in observed high-z systems in UDF, GEMS, GOODS, and CANDELS surveys. These results suggest that some clumpy high-z galaxies without observable tidal features could be the result of mergers. The local clumps also have the same star formation rate per unit area and stellar surface density as clumps observed at intermediate and high redshift, so they provide insight into the substructure of distant clumps. A total of 1596 star clusters brighter than MV = -9 were identified within the boundaries of the local clumps. The cluster magnitude distribution function is a power law with approximately the same slope (approximately -1 for a number-log luminosity plot) for all the galaxies both inside and outside the clumps and independent of clump surface brightness.

astro-ph.GA

Federated Learning for Breast Density Classification: A Real-World Implementation

Building robust deep learning-based models requires large quantities of diverse training data. In this study, we investigate the use of federated learning (FL) to build medical imaging classification models in a real-world collaborative setting. Seven clinical institutions from across the world joined this FL effort to train a model for breast density classification based on Breast Imaging, Reporting & Data System (BI-RADS). We show that despite substantial differences among the datasets from all sites (mammography system, class distribution, and data set size) and without centralizing data, we can successfully train AI models in federation. The results show that models trained using FL perform 6.3% on average better than their counterparts trained on an institute's local data alone. Furthermore, we show a 45.8% relative improvement in the models' generalizability when evaluated on the other participating sites' testing data.

eess.IV

CHEC: A Compact High Energy Camera for the Cherenkov Telescope Array

The Cherenkov Telescope Array will provide unprecedented sensitivity and angular resolution to gamma rays across orders of magnitude in energy. Above 1 TeV up to around 300 TeV an array of Small-Sized Telescopes (SSTs) will cover several kilometres on the ground. The Compact High-Energy Camera (CHEC) is a proposed option for the camera of the SSTs. CHEC contains 2048 pixels of physical size about 6 mm x 6 mm, leading to a field of view of over 8 degrees. Electronics based on custom ASICs (TARGET) and FPGAs sample incoming signals at a gigasample per second and provide a flexible triggering scheme. Waveforms for every pixel in every event are read out without loss at over 600 events per second. A telescope prototype in Meudon, Paris, saw first Cherenkov light from air showers in late 2015, using the first CHEC prototype. Research and development for CHEC is currently focussed on taking advantage of the latest generation of silicon photomultipliers (SiPMs).

astro-ph.IM

Robust Statistics for Image Deconvolution

We present a blind multiframe image-deconvolution method based on robust statistics. The usual shortcomings of iterative optimization of the likelihood function are alleviated by minimizing the M-scale of the residuals, which achieves more uniform convergence across the image. We focus on the deconvolution of astronomical images, which are among the most challenging due to their huge dynamic ranges and the frequent presence of large noise-dominated regions in the images. We show that high-quality image reconstruction is possible even in super-resolution and without the use of traditional regularization terms. Using a robust \r{ho}-function is straightforward to implement in a streaming setting and, hence our method is applicable to the large volumes of astronomy images. The power of our method is demonstrated on observations from the Sloan Digital Sky Survey (Stripe 82) and we briefly discuss the feasibility of a pipeline based on Graphical Processing Units for the next generation of telescope surveys.

astro-ph.IM

A Compact High Energy Camera (CHEC) for the Gamma-ray Cherenkov Telescope of the Cherenkov Telescope Array

The Gamma-ray Cherenkov Telescope (GCT) is one of the Small Size Telescopes (SSTs) proposed for the Cherenkov Telescope Array (CTA) aimed at the 1 TeV to 300 TeV energy range. GCT will be equipped with a Compact High-Energy Camera (CHEC) containing 2048 pixels of physical size about 6$\times$6~mm$^2$, leading to a field of view of over 8 degrees. Electronics based on custom TARGET ASICs and FPGAs sample incoming signals at a gigasample per second and provide a flexible triggering scheme. Waveforms for every pixel in every event are read out are on demand without loss at over 600 events per second. A GCT prototype in Meudon, Paris saw first Cherenkov light from air showers in late 2015, using the first CHEC prototype, CHEC-M. This contribution presents results from lab and field tests with CHEC-M and the progress made to a robust camera design for deployment within CTA.

astro-ph.IM

Flasher and muon-based calibration of the GCT telescopes proposed for the Cherenkov Telescope Array

The GCT is a dual-mirror Small-Sized-Telescope prototype proposed for the Cherenkov Telescope Array. Calibration of the GCT's camera is primarily achieved with LED-based flasher units capable of producing $\sim4$ ns FWHM pulses of 400 nm light across a large dynamic range, from 0.1 up to 1000 photoelectrons. The flasher units are housed in the four corners of the camera's focal plane and illuminate it via reflection from the secondary mirror. These flasher units are adaptable to allow several calibration scenarios to be accomplished: camera flat-fielding, linearity measurements (up to and past saturation), and gain estimates from both single pe measurements and from the photon statistics at various high illumination levels. In these proceedings, the performance of the GCT flashers is described, together with ongoing simulation work to quantify the efficiency of using muon rings as an end-to-end calibration for the optical throughput of the GCT.

astro-ph.IM

The CTA Sensitivity to Lorentz-Violating Effects on the Gamma-Ray Horizon

The arrival of TeV-energy photons from distant galaxies is expected to be affected by their QED interaction with intergalactic radiation fields through electron-positron pair production. In theories where high-energy photons violate Lorentz symmetry, the kinematics of the process $γ+ γ\rightarrow e^+ + e^-$ is altered and the cross-section suppressed. Consequently, one would expect more of the highest-energy photons to arrive if QED is modified by Lorentz violation than if it is not. We estimate the sensitivity of Cherenkov Telescope Array (CTA) to changes in the $γ$-ray horizon of the Universe due to Lorentz violation, and find that it should be competitive with other leading constraints.

astro-ph.HE

Photosensor Characterization for the Cherenkov Telescope Array: Silicon Photomultiplier versus Multi-Anode Photomultiplier Tube

Photomultiplier tube technology has been the photodetector of choice for the technique of imaging atmospheric Cherenkov telescopes since its birth more than 50 years ago. Recently, new types of photosensors are being contemplated for the next generation Cherenkov Telescope Array. It is envisioned that the array will be partly composed of telescopes using a Schwarzschild-Couder two mirror design never built before which has significantly improved optics. The camera of this novel optical design has a small plate scale which enables the use of compact photosensors. We present an extensive and detailed study of the two most promising devices being considered for this telescope design: the silicon photomultiplier and the multi-anode photomultiplier tube. We evaluated their most critical performance characteristics for imaging gamma-ray showers, and we present our results in a cohesive manner to clearly evaluate the advantages and disadvantages that both types of device have to offer in the context of GeV-TeV gamma-ray astronomy.

astro-ph.IM

A Close Separation Double Quasar Lensed by a Gas-Rich Galaxy

In the course of a Cycle 8 snapshot survey, we have discovered that the z=1.565 quasar HE 0512-3329 is a double with image separation 0.644", almost certainly due to gravitational lensing. The two components differ in brightness by only 0.4 magnitudes and a high signal-to-noise ground-based composite optical spectrum shows no trace of any stellar features at zero redshift, essentially ruling out the possibility that one of the two components is an ordinary Galactic star. The optical spectrum shows strong absorption features of MgII, MgI, FeII, FeI, and CaI, all at an identical intervening redshift of z=0.9313, probably due to the lensing object. The strength of the MgII and the presence of the other low ionization absorption features is strong evidence for a damped Lyman alpha system, likely the disk of a spiral galaxy. Point spread function fitting to remove the two quasar components from the STIS image leads to a tentative detection of a third object which may be the nucleus of the lensing galaxy. The brighter component is significantly redder than the fainter, due to either differential extinction or microlensing.

astro-ph