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Rick Rischter

Publications and source records attributed to Rick Rischter.

10 recordsLinked to original sources

Multistationarity questions in reduced vs extended biochemical networks

We address several questions in reduced versus extended networks via the elimination or addition of intermediate complexes in the framework of chemical reaction networks with mass-action kinetics. We clarify and extend advances in the literature concerning multistationarity in this context. We establish general results about MESSI systems, which we use to compute the circuits of multistationarity for significant biochemical networks.

q-bio.MN

Decomposition algorithms for tensors and polynomials

We give algorithms to compute decompositions of a given polynomial, or more generally mixed tensor, as sum of rank one tensors, and to establish whether such a decomposition is unique. In particular, we present methods to compute the decomposition of a general plane quintic in seven powers, and of a general space cubic in five powers; the two decompositions of a general plane sextic of rank nine, and the five decompositions of a general plane septic. Furthermore, we give Magma implementations of all our algorithms.

math.AG

On Mori chamber and stable base locus decompositions

The effective cone of a Mori dream space admits two wall-and-chamber decompositions called Mori chamber and stable base locus decompositions. In general the former is a non trivial refinement of the latter. We investigate, from both the geometrical and the combinatorial viewpoints, the differences between these decompositions. Furthermore, we provide a criterion to establish whether the two decompositions coincide for a Mori dream space of Picard rank two, and we construct an explicit example of a Mori dream space of Picard rank two for which the decompositions are different, showing that our criterion is sharp. Finally, we classify the smooth toric 3-folds of Picard rank three for which the two decompositions are different.

math.AG

Parameter regions that give rise to 2[n/2]+1 positive steady states in the n-site phosphorylation system

The distributive sequential n-site phosphorylation/dephosphorylation system is an important building block in networks of chemical reactions arising in molecular biology, which has been intensively studied. In the nice paper of Wang and Sontag (2008) it is shown that for certain choices of the reaction rate constants and total conservation constants, the system can have 2[n/2]+1 positive steady states (that is, n+1 positive steady states for n even and n positive steady states for n odd). In this paper we give open parameter regions in the space of reaction rate constants and total conservation constants that ensure these number of positive steady states, while assuming in the modeling that roughly only 1/4 of the intermediates occur in the reaction mechanism. This result is based on the general framework developed by Bihan, Dickenstein, and Giaroli (2018), which can be applied to other networks. We also describe how to implement these tools to search for multistationarity regions in a computer algebra system and present some computer aided results.

q-bio.MN

Projective aspects of the Geometry of Lagrangian Grassmannians and Spinor varieties

We study the projective behavior, mainly with respect to osculating spaces and secant varieties, of Lagrangian Grassmannians and Spinor varieties. We prove that these varieties have osculating dimension smaller than expected. Furthermore, we give numerical conditions ensuring the non secant defectivity of Lagrangian Grassmannians in their Plücker embedding and of Spinor varieties in both their Plücker and Spinor embeddings.

math.AG

Spherical blow-ups of Grassmannians and Mori Dream Spaces

In this paper we classify weak Fano varieties that can be obtained by blowing-up general points in prime Fano varieties. We also classify spherical blow-ups of Grassmannians in general points, and we compute their effective cone. These blow-ups are, in particular, Mori dream spaces. Furthermore, we compute the stable base locus decomposition of the blow-up of a Grassmannian in one point, and we show how it is determined by linear systems of hyperplanes containing the osculating spaces of the Grassmannian at the blown-up point, and by the rational normal curves in the Grassmannian passing through the blown-up point.

math.AG

On non-secant defectivity of Segre-Veronese varieties

Let $SV^{\pmb n}_{\pmb d}$ be the Segre-Veronese given as the image of the embedding induced by the line bundle $\mathcal{O}_{\mathbb{P}^{n_1}\times\dots\times\mathbb{P}^{n_r}}(d_1,\dots, d_r)$. We prove that asymptotically $SV^{\pmb n}_{\pmb d}$ is not $h$-defective for $h\leq n_1^{\lfloor \log_2(d-1)\rfloor}$.

math.AG

Non-Secant Defectivity via Osculating Projections

We introduce a method to produce bounds for the non secant defectivity of an arbitrary irreducible projective variety, once we know how its osculating spaces behave in families and when the linear projections from them are generically finite. Then we analyze the relative dimension of osculating projections of Grassmannians, and as an application of our techniques we prove that asymptotically the Grassmannian $\mathbb{G}(r,n)$, parametrizing $r$-planes in $\mathbb{P}^n$, is not $h$-defective for $h\leq (\frac{n+1}{r+1})^{\lfloor\log_2(r)\rfloor}$. This bound improves the previous one $h\leq \frac{n-r}{3}+1$, due to H. Abo, G. Ottaviani and C. Peterson, for any $r\geq 4$.

math.AG