arXiv subjects

Rizwan Ahmad

Publications and source records attributed to Rizwan Ahmad.

At least 19 recordsLinked to original sources

arXiv2026

Patch-Based Diffusion Reconstruction for Accelerated Cardiac Cine

Purpose: To develop and evaluate a diffusion-based reconstruction framework for highly accelerated 2D real-time (RT) cine cardiovascular magnetic resonance imaging (CMR). Methods: We trained an unconditional patch-based diffusion model and incorporated it into a reconstruction framework, termed CineDiff, using diffusion posterior sampling for data consistency. CineDiff was evaluated in four settings: (i) 30 retrospectively undersampled breath-held cine at 1.5T and 3T from healthy participants across multiple acceleration rates, (ii) 15 prospectively undersampled free-breathing RT cine at 1.5T and 3T from patients indicated for clinical CMR, and (iii) 10 prospectively undersampled mid-field (0.55T) free-breathing scans, including five from healthy subjects and five from porcine models. For retrospective undersampling, reconstruction quality was assessed using peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), learned perceptual image patch similarity (LPIPS), and deep image structure and texture similarity (DISTS). For prospective undersampling, image quality was evaluated by blinded expert scoring on a 5-point Likert scale. Results: In retrospectively undersampled breath-held cine data, CineDiff achieved higher PSNR and SSIM and lower LPIPS and DISTS than the comparison methods across all evaluated acceleration rates. In prospectively undersampled free-breathing RT cine data, CineDiff received higher expert image-quality scores. Qualitatively, CineDiff reduced block-like artifacts and preserved finer anatomical detail compared with traditional compressed sensing and a variational network method, termed CineVN. Conclusion: CineDiff enabled high-quality reconstruction of highly accelerated 2D RT cine CMR. The method also demonstrated robustness to out-of-distribution data, including mid-field and porcine acquisitions.

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arXiv2026

MOSAIC: A Self-supervised Dynamic Multi-encoding Reconstruction Framework for 3D Late Gadolinium Enhancement MRI

Purpose: To develop and evaluate a self-supervised dynamic reconstruction framework for highly undersampled dual-echo three-dimensional late gadolinium enhancement (3D LGE) MRI. Methods: MOSAIC jointly models multi-echo image content, coil sensitivity maps, and beat-specific nonrigid motion directly from acquired undersampled data, without requiring fully sampled training datasets or accurate precomputed sensitivity maps. Unlike existing methods that bin the acquired data into different motion states, with or without motion compensation, MOSAIC reconstructs a motion-resolved 3D LGE image from each heartbeat. The method was evaluated using digital phantoms with simulated myocardial scars and in vivo animal and human studies. Results: In phantom experiments, MOSAIC achieved higher peak signal-to-noise ratio and structural similarity index measure than low-rank deep image prior reconstruction and ablation variants of MOSAIC. In animal and human studies, MOSAIC achieved higher blinded expert image-quality scores than inline image-navigated compressed-sensing and low-rank deep image prior reconstructions. Conclusion: MOSAIC demonstrated the feasibility of motion-resolved free-breathing dual-echo 3D LGE MRI at acceleration factors exceeding 1,000, with improved detail preservation and artifact suppression relative to the state-of-the-art comparison methods.

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arXiv2026

Feasibility of Continuous Ventricular Volumetric Quantification in Arrhythmias using Real-Time 3D CMR-MOTUS

Conventional cardiovascular magnetic resonance (CMR) cine imaging combines data across multiple heartbeats, an assumption that can fail in arrhythmia because beat-to-beat variation causes motion artifacts and obscures functional heterogeneity. Although 2D real-time cine resolves individual beats, stacked slices are suboptimal for capturing complex 3D cardiac dynamics. We investigated continuous beat-to-beat volumetric quantification in patients with premature ventricular contractions (PVCs) using free-running 3D real-time CMR. CMR-MOTUS was extended to jointly reconstruct time-resolved 3D motion fields and a motion-corrected reference image from continuously acquired data without breath-holding or ECG gating. Data were acquired with a variable-density Cartesian trajectory and either 3D spoiled gradient-echo or balanced steady-state free-precession imaging. Ventricular volumes were obtained by propagating one manual reference-image segmentation through all reconstructed frames. The method was evaluated in a cardiac motion phantom with static ground-truth acquisitions, 10 healthy volunteers, and 10 patients with PVCs; all in vivo scans were performed after contrast administration. Phantom ejection fraction (EF) agreed closely with ground truth (17.86% versus 17.27%). Healthy volunteers showed narrow beat-to-beat EF distributions, whereas patients with PVCs showed broader and sometimes bimodal distributions. Simultaneous ECG recordings supported the temporal correspondence between volume irregularities and PVC episodes. Free-running joint 3D motion-field and image reconstruction enables continuous beat-to-beat volumetric assessment and can reveal functional heterogeneity obscured by gated or heartbeat-averaged methods. Larger studies are required to establish clinical validity and determine its role alongside standard 2D cine analysis.

physics.med-ph↗

arXiv2026

Collection: UAV-Based Wireless Multi-modal Measurements from AERPAW Autonomous Data Mule (AADM) Challenge in Digital Twin and Real-World Environments

In this work, we present an unmanned aerial vehicle (UAV) wireless dataset collected as part of the AERPAW Autonomous Aerial Data Mule (AADM) challenge, organized by the NSF Aerial Experimentation and Research Platform for Advanced Wireless (AERPAW) project. The AADM challenge was the second competition in which an autonomous UAV acted as a data mule, where the UAV downloaded data from multiple base stations (BSs) in a dynamic wireless environment. Participating teams designed flight control and decision-making algorithms for choosing which BSs to communicate with and how to plan flight trajectories to maximize data download within a mission completion time. The competition was conducted in two stages: Stage 1 involved development and experimentation using a digital twin (DT) environment, and in Stage 2, the final test run was conducted on the outdoor testbed. The total score for each team was compiled from both stages. The resulting dataset includes link quality and data download measurements, both in DT and physical environments. Along with the USRP measurements used in the contest, the dataset also includes UAV telemetry, Keysight RF sensors position estimates, link quality measurements from LoRa receivers, and Fortem radar measurements. It supports reproducible research on autonomous UAV networking, multi-cell association and scheduling, air-to-ground propagation modeling, DT-to-real-world transfer learning, and integrated sensing and communication, which serves as a benchmark for future autonomous wireless experimentation.

cs.NI↗

arXiv2026

CoBA: Integrated Deep Learning Model for Reliable Low-Altitude UAV Classification in mmWave Radio Networks

Uncrewed Aerial Vehicles (UAVs) are increasingly used in civilian and industrial applications, making secure low-altitude operations crucial. In dense mmWave environments, accurately classifying low-altitude UAVs as either inside authorized or restricted airspaces remains challenging, requiring models that handle complex propagation and signal variability. This paper proposes a deep learning model, referred to as CoBA, which stands for integrated Convolutional Neural Network (CNN), Bidirectional Long Short-Term Memory (BiLSTM), and Attention which leverages Fifth Generation (5G) millimeter-wave (mmWave) radio measurements to classify UAV operations in authorized and restricted airspaces at low altitude. The proposed CoBA model integrates convolutional, bidirectional recurrent, and attention layers to capture both spatial and temporal patterns in UAV radio measurements. To validate the model, a dedicated dataset is collected using the 5G mmWave network at TalTech, with controlled low altitude UAV flights in authorized and restricted scenarios. The model is evaluated against conventional ML models and a fingerprinting-based benchmark. Experimental results show that CoBA achieves superior accuracy, significantly outperforming all baseline models and demonstrating its potential for reliable and regulated UAV airspace monitoring.

cs.LG↗

arXiv2025

Enabling Ultra-Fast Cardiovascular Imaging Across Heterogeneous Clinical Environments with A Generalist Foundation Model and Multimodal Database

Multimodal cardiovascular magnetic resonance (CMR) imaging provides comprehensive and non-invasive insights into cardiovascular disease (CVD) diagnosis and underlying mechanisms. Despite decades of advancements, its widespread clinical adoption remains constrained by prolonged scan times, inconsistent image quality, and heterogeneity across medical environments. This underscores the urgent need for a generalist reconstruction foundation model for ultra-fast CMR imaging, one formulated for physics-constrained inverse problems in the sensor (k-space) domain, capable of adapting across diverse imaging scenarios and serving as the essential substrate for all downstream analyses. To enable this goal, we curate MMCMR-427K, the largest and most comprehensive multimodal CMR k-space database to date, comprising 427,465 multi-coil k-space data paired with structured metadata across 13 international centers, 12 CMR modalities, 15 scanners spanning four field strengths, and 17 CVD categories in populations across three continents. Building on this unprecedented resource, we introduce CardioMM, a generalist reconstruction foundation model capable of dynamically adapting to heterogeneous fast CMR imaging scenarios. CardioMM unifies semantic contextual understanding with physics-informed data consistency to deliver robust reconstructions across varied scanners, protocols, and patient presentations. Comprehensive evaluations demonstrate that CardioMM achieves state-of-the-art performance across internal centers and exhibits strong zero-shot generalization to unseen external settings. Importantly, CardioMM supports acceleration up to 24x, providing the first evidence that such extreme acquisition speed can preserve key cardiac phenotypes, quantitative myocardial biomarkers, and diagnostic image quality without compromising clinical integrity.

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arXiv2025

Deep Learning-Driven Inversion Framework for Shear Modulus Estimation in Magnetic Resonance Elastography (DIME)

The Multimodal Direct Inversion (MMDI) algorithm is widely used in Magnetic Resonance Elastography (MRE) to estimate tissue shear stiffness. However, MMDI relies on the Helmholtz equation, which assumes wave propagation in a uniform, homogeneous, and infinite medium. Furthermore, the use of the Laplacian operator makes MMDI highly sensitive to noise, which compromises the accuracy and reliability of stiffness estimates. In this study, we propose the Deep-Learning driven Inversion Framework for Shear Modulus Estimation in MRE (DIME), aimed at enhancing the robustness of inversion. DIME is trained on the displacement fields-stiffness maps pair generated through Finite Element Modelling (FEM) simulations. To capture local wave behavior and improve robustness to global image variations, DIME is trained on small image patches. We first validated DIME using homogeneous and heterogeneous datasets simulated with FEM, where DIME produced stiffness maps with low inter-pixel variability, accurate boundary delineation, and higher correlation with ground truth (GT) compared to MMDI. Next, DIME was evaluated in a realistic anatomy-informed simulated liver dataset with known GT and compared directly to MMDI. DIME reproduced ground-truth stiffness patterns with high fidelity (r = 0.99, R^2 = 0.98), while MMDI showed greater underestimation. After validating DIME on synthetic data, we tested the model in in vivo liver MRE data from eight healthy and seven fibrotic subjects. DIME preserved physiologically consistent stiffness patterns and closely matched MMDI, which showed directional bias. Overall, DIME showed higher correlation with ground truth and visually similar stiffness patterns, whereas MMDI displayed a larger bias that can potentially be attributed to directional filtering. These preliminary results highlight the feasibility of DIME for clinical applications in MRE.

cs.LG↗

arXiv2025

A multi-dynamic low-rank deep image prior (ML-DIP) for 3D real-time cardiovascular MRI

Purpose: To develop a reconstruction framework for 3D real-time cine cardiovascular magnetic resonance (CMR) from highly undersampled data without requiring fully sampled training datasets. Methods: We developed a multi-dynamic low-rank deep image prior (ML-DIP) framework that models spatial image content and deformation fields using separate neural networks. These sub-networks are jointly trained per scan to reconstruct the dynamic image series directly from undersampled k-space data. ML-DIP was evaluated on (i) a 3D cine digital phantom with simulated premature ventricular contractions (PVCs), (ii) ten healthy subjects (including two scanned during both rest and exercise), and (iii) 12 patients with a history of PVCs. Phantom results were assessed using peak signal-to-noise ratio (PSNR) and structural similarity index measure (SSIM). In vivo performance was evaluated by comparing left-ventricular function quantification (against 2D real-time cine) and image quality (against 2D real-time cine and binning-based 5D-Cine). Results: In the phantom study, ML-DIP achieved PSNR > 29 dB and SSIM > 0.90 for scan times as short as two minutes, while recovering cardiac motion, respiratory motion, and PVC events. In healthy subjects, ML-DIP yielded functional measurements comparable to 2D cine and higher image quality than 5D-Cine, including during exercise with high heart rates and bulk motion. In PVC patients, ML-DIP preserved beat-to-beat variability and reconstructed irregular beats, whereas 5D-Cine showed motion artifacts and information loss due to binning. Conclusion: ML-DIP enables high-quality 3D real-time CMR with acceleration factors exceeding 1,000 by learning low-rank spatial and motion representations from undersampled data, without relying on external fully sampled training datasets.

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arXiv2025

Minimax Multi-Target Conformal Prediction with Applications to Imaging Inverse Problems

In ill-posed imaging inverse problems, uncertainty quantification remains a fundamental challenge, especially in safety-critical applications. Recently, conformal prediction has been used to quantify the uncertainty that the inverse problem contributes to downstream tasks like image classification, image quality assessment, fat mass quantification, etc. While existing works handle only a scalar estimation target, practical applications often involve multiple targets. In response, we propose an asymptotically minimax approach to multi-target conformal prediction that provides tight prediction intervals while ensuring joint marginal coverage. We then outline how our minimax approach can be applied to multi-metric blind image quality assessment, multi-task uncertainty quantification, and multi-round measurement acquisition. Finally, we numerically demonstrate the benefits of our minimax method, relative to existing multi-target conformal prediction methods, using both synthetic and magnetic resonance imaging (MRI) data. Code is available at https://github.com/jwen307/multi_target_minimax.

cs.CV↗

arXiv2025

Solving Inverse Problems using Diffusion with Iterative Colored Renoising

Imaging inverse problems can be solved in an unsupervised manner using pre-trained diffusion models, but doing so requires approximating the gradient of the measurement-conditional score function in the diffusion reverse process. We show that the approximations produced by existing methods are relatively poor, especially early in the reverse process, and so we propose a new approach that iteratively reestimates and "renoises" the estimate several times per diffusion step. This iterative approach, which we call Fast Iterative REnoising (FIRE), injects colored noise that is shaped to ensure that the pre-trained diffusion model always sees white noise, in accordance with how it was trained. We then embed FIRE into the DDIM reverse process and show that the resulting "DDfire" offers state-of-the-art accuracy and runtime on several linear inverse problems, as well as phase retrieval. Our implementation is at https://github.com/matt-bendel/DDfire

cs.CV↗

arXiv2025

EMORe: Motion-Robust 5D MRI Reconstruction via Expectation-Maximization-Guided Binning Correction and Outlier Rejection

We propose EMORe, an adaptive reconstruction method designed to enhance motion robustness in free-running, free-breathing self-gated 5D cardiac magnetic resonance imaging (MRI). Traditional self-gating-based motion binning for 5D MRI often results in residual motion artifacts due to inaccuracies in cardiac and respiratory signal extraction and sporadic bulk motion, compromising clinical utility. EMORe addresses these issues by integrating adaptive inter-bin correction and explicit outlier rejection within an expectation-maximization (EM) framework, whereby the E-step and M-step are executed alternately until convergence. In the E-step, probabilistic (soft) bin assignments are refined by correcting misassignment of valid data and rejecting motion-corrupted data to a dedicated outlier bin. In the M-step, the image estimate is improved using the refined soft bin assignments. Validation in a simulated 5D MRXCAT phantom demonstrated EMORe's superior performance compared to standard compressed sensing reconstruction, showing significant improvements in peak signal-to-noise ratio, structural similarity index, edge sharpness, and bin assignment accuracy across varying levels of simulated bulk motion. In vivo validation in 13 volunteers further confirmed EMORe's robustness, significantly enhancing blood-myocardium edge sharpness and reducing motion artifacts compared to compressed sensing, particularly in scenarios with controlled coughing-induced motion. Although EMORe incurs a modest increase in computational complexity, its adaptability and robust handling of bulk motion artifacts significantly enhance the clinical applicability and diagnostic confidence of 5D cardiac MRI.

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arXiv2025

Multi-dynamic deep image prior for cardiac MRI

Cardiovascular magnetic resonance imaging is a powerful diagnostic tool for assessing cardiac structure and function. However, traditional breath-held imaging protocols pose challenges for patients with arrhythmias or limited breath-holding capacity. This work aims to overcome these limitations by developing a reconstruction framework that enables high-quality imaging in free-breathing conditions for various dynamic cardiac MRI protocols. Multi-Dynamic Deep Image Prior (M-DIP), a novel unsupervised reconstruction framework for accelerated real-time cardiac MRI, is introduced. To capture contrast or content variation, M-DIP first employs a spatial dictionary to synthesize a time-dependent intermediate image. Then, this intermediate image is further refined using time-dependent deformation fields that model cardiac and respiratory motion. Unlike prior DIP-based methods, M-DIP simultaneously captures physiological motion and frame-to-frame content variations, making it applicable to a wide range of dynamic applications. We validate M-DIP using simulated MRXCAT cine phantom data as well as free-breathing real-time cine, single-shot late gadolinium enhancement (LGE), and first-pass perfusion data from clinical patients. Comparative analyses against state-of-the-art supervised and unsupervised approaches demonstrate M-DIP's performance and versatility. M-DIP achieved better image quality metrics on phantom data, higher reader scores on in-vivo cine and LGE data, and comparable scores on in-vivo perfusion data relative to another DIP-based approach. M-DIP enables high-quality reconstructions of real-time free-breathing cardiac MRI without requiring external training data. Its ability to model physiological motion and content variations makes it a promising approach for various dynamic imaging applications.

physics.med-ph↗

arXiv2025

An unsupervised method for MRI recovery: Deep image prior with structured sparsity

Objective: To propose and validate an unsupervised MRI reconstruction method that does not require fully sampled k-space data. Materials and Methods: The proposed method, deep image prior with structured sparsity (DISCUS), extends the deep image prior (DIP) by introducing group sparsity to frame-specific code vectors, enabling the discovery of a low-dimensional manifold for capturing temporal variations. \discus was validated using four studies: (I) simulation of a dynamic Shepp-Logan phantom to demonstrate its manifold discovery capabilities, (II) comparison with compressed sensing and DIP-based methods using simulated single-shot late gadolinium enhancement (LGE) image series from six distinct digital cardiac phantoms in terms of normalized mean square error (NMSE) and structural similarity index measure (SSIM), (III) evaluation on retrospectively undersampled single-shot LGE data from eight patients, and (IV) evaluation on prospectively undersampled single-shot LGE data from eight patients, assessed via blind scoring from two expert readers. Results: DISCUS outperformed competing methods, demonstrating superior reconstruction quality in terms of NMSE and SSIM (Studies I--III) and expert reader scoring (Study IV). Discussion: An unsupervised image reconstruction method is presented and validated on simulated and measured data. These developments can benefit applications where acquiring fully sampled data is challenging.

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arXiv2025

Groupwise Image Registration with Edge-Based Loss for Low-SNR Cardiac MRI

Purpose: To perform image registration and averaging of multiple free-breathing single-shot cardiac images, where the individual images may have a low signal-to-noise ratio (SNR). Methods: To address low SNR encountered in single-shot imaging, especially at low field strengths, we propose a fast deep learning (DL)-based image registration method, called Averaging Morph with Edge Detection (AiM-ED). AiM-ED jointly registers multiple noisy source images to a noisy target image and utilizes a noise-robust pre-trained edge detector to define the training loss. We validate AiM-ED using synthetic late gadolinium enhanced (LGE) images from the MR extended cardiac-torso (MRXCAT) phantom and free-breathing single-shot LGE images from healthy subjects (24 slices) and patients (5 slices) under various levels of added noise. Additionally, we demonstrate the clinical feasibility of AiM-ED by applying it to data from patients (6 slices) scanned on a 0.55T scanner. Results: Compared to a traditional energy-minimization-based image registration method and DL-based VoxelMorph, images registered using AiM-ED exhibit higher values of recovery SNR and three perceptual image quality metrics. An ablation study shows the benefit of both jointly processing multiple source images and using an edge map in AiM-ED. Conclusion: For single-shot LGE imaging, AiM-ED outperforms existing image registration methods in terms of image quality. With fast inference, minimal training data requirements, and robust performance at various noise levels, AiM-ED has the potential to benefit single-shot CMR applications.

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arXiv2025

Conformal Bounds on Full-Reference Image Quality for Imaging Inverse Problems

In imaging inverse problems, we would like to know how close the recovered image is to the true image in terms of full-reference image quality (FRIQ) metrics like PSNR, SSIM, LPIPS, etc. This is especially important in safety-critical applications like medical imaging, where knowing that, say, the SSIM was poor could potentially avoid a costly misdiagnosis. But since we don't know the true image, computing FRIQ is non-trivial. In this work, we combine conformal prediction with approximate posterior sampling to construct bounds on FRIQ that are guaranteed to hold up to a user-specified error probability. We demonstrate our approach on image denoising and accelerated magnetic resonance imaging (MRI) problems. Code is available at https://github.com/jwen307/quality_uq.

cs.CV↗

arXiv2025

Accelerated Real-time Cine and Flow under In-magnet Staged Exercise

Background: Cardiovascular magnetic resonance imaging (CMR) is a well established imaging tool for diagnosing and managing cardiac conditions. The integration of exercise stress with CMR (ExCMR) can enhance its diagnostic capacity. Despite recent advances in CMR technology, quantitative ExCMR during exercise remains technically challenging due to motion artifacts and limited spatial and temporal resolution. Methods: This study investigated the feasibility of biventricular functional and hemodynamic assessment using real-time (RT) ExCMR during a staged exercise protocol in 24 healthy volunteers. We employed high acceleration rates and applied a coil reweighting technique to minimize motion blurring and artifacts. We further applied a beat-selection technique that identified beats from the endexpiratory phase to minimize the impact of respiration-induced through-plane motion on cardiac function quantification. Additionally, results from six patients were presented to demonstrate clinical feasibility. Results: Our findings indicated a consistent decrease in end-systolic volume and stable end-diastolic volume across exercise intensities, leading to increased stroke volume and ejection fraction. The selection of end-expiratory beats modestly enhanced the repeatability of cardiac function parameters, as shown by scan-rescan tests in nine volunteers. High scores from a blinded image quality assessment indicated that coil reweighting effectively minimized motion artifacts. Conclusions: This study demonstrated the feasibility of RT ExCMR with inmagnet exercise in healthy subjects and patients. Our results indicate that high acceleration rates, coil reweighting, and selection of respiratory phase-specific heartbeats enhance image quality and repeatability of quantitative RT ExCMR.

eess.SP↗

arXiv2024

MRI Recovery with Self-Calibrated Denoisers without Fully-Sampled Data

Objective: Acquiring fully sampled training data is challenging for many MRI applications. We present a self-supervised image reconstruction method, termed ReSiDe, capable of recovering images solely from undersampled data. Materials and Methods: ReSiDe is inspired by plug-and-play (PnP) methods, but unlike traditional PnP approaches that utilize pre-trained denoisers, ReSiDe iteratively trains the denoiser on the image or images that are being reconstructed. We introduce two variations of our method: ReSiDe-S and ReSiDe-M. ReSiDe-S is scan-specific and works with a single set of undersampled measurements, while ReSiDe-M operates on multiple sets of undersampled measurements and provides faster inference. Studies I, II, and III compare ReSiDe-S and ReSiDe-M against other self-supervised or unsupervised methods using data from T1- and T2-weighted brain MRI, MRXCAT digital perfusion phantom, and first-pass cardiac perfusion, respectively. Results: ReSiDe-S and ReSiDe-M outperform other methods in terms of peak signal-to-noise ratio and structural similarity index measure for Studies I and II, and in terms of expert scoring for Study III. Discussion: We present a self-supervised image reconstruction method and validate it in both static and dynamic MRI applications. These developments can benefit MRI applications where the availability of fully sampled training data is limited.

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arXiv2024

pcaGAN: Improving Posterior-Sampling cGANs via Principal Component Regularization

In ill-posed imaging inverse problems, there can exist many hypotheses that fit both the observed measurements and prior knowledge of the true image. Rather than returning just one hypothesis of that image, posterior samplers aim to explore the full solution space by generating many probable hypotheses, which can later be used to quantify uncertainty or construct recoveries that appropriately navigate the perception/distortion trade-off. In this work, we propose a fast and accurate posterior-sampling conditional generative adversarial network (cGAN) that, through a novel form of regularization, aims for correctness in the posterior mean as well as the trace and K principal components of the posterior covariance matrix. Numerical experiments demonstrate that our method outperforms contemporary cGANs and diffusion models in imaging inverse problems like denoising, large-scale inpainting, and accelerated MRI recovery. The code for our model can be found here: https://github.com/matt-bendel/pcaGAN.

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