arXiv subjects

Robert A. DiStasio Jr

Publications and source records attributed to Robert A. DiStasio Jr.

9 recordsLinked to original sources

arXiv2023

High-Throughput Condensed-Phase Hybrid Density Functional Theory for Large-Scale Finite-Gap Systems: The SeA Approach

High-throughput DFT calculations are key to screening existing/novel materials, sampling potential energy surfaces, and generating quantum mechanical data for machine learning. By including a fraction of exact exchange (EXX), hybrid functionals reduce the self-interaction error in semi-local DFT and furnish a more accurate description of the underlying electronic structure, albeit at a high computational cost that often prohibits such high-throughput applications. To address this challenge, we have constructed SeA (SeA=SCDM+exx+ACE), a robust, accurate, and efficient framework for high-throughput condensed-phase hybrid DFT in the PWSCF module of Quantum ESPRESSO (QE) by combining: (1) the non-iterative selected columns of the density matrix (SCDM) orbital localization scheme, (2) a black-box and linear-scaling EXX algorithm (exx), and (3) adaptively compressed exchange (ACE). Across a diverse set of non-equilibrium (H$_2$O)$_{64}$ configurations (with densities spanning 0.4 g/cm$^3$$-$1.7 g/cm$^3$), SeA yields a one$-$two order-of-magnitude speedup (~8X$-$26X) in the overall time-to-solution compared to PWSCF(ACE) in QE (~78X$-$247X speedup compared to the conventional EXX implementation) and yields energies, ionic forces, and other properties with high fidelity. As a proof-of-principle high-throughput application, we trained a deep neural network (DNN) potential for ambient liquid water at the hybrid DFT level using SeA via an actively learned data set with ~8,700 (H$_2$O)$_{64}$ configurations. Using an out-of-sample set of (H$_2$O)$_{512}$ configurations (at non-ambient conditions), we confirmed the accuracy of this SeA-trained potential and showcased the capabilities of SeA by computing the ground-truth ionic forces in this challenging system containing > 1,500 atoms.

cond-mat.mtrl-sci↗

arXiv2023

Range-Separated Hybrid Functional Pseudopotentials

Consistency between the exchange-correlation (xc) functional used during pseudopotential construction and planewave-based electronic structure calculations is important for an accurate and reliable description of the structure and properties of condensed-phase systems. In this work, we present a general scheme for constructing pseudopotentials with range-separated hybrid (RSH) xc functionals based on the solution of the all-electron radial integro-differential equation for a spherical atomic configuration. As proof-of-principle, we demonstrate pseudopotential construction with the PBE, PBE0, HSE, and sRSH (based on LC-$ω$PBE0) xc functionals for a select set of atoms, and then investigate the importance of pseudopotential consistency when computing band gaps, equilibrium lattice parameters, bulk moduli, and atomization energies of several solid-state systems. In doing so, we find that pseudopotential consistency errors (PSCE) tend to be systematic and can be as large as $1.4\%$ when computing these properties.

cond-mat.mtrl-sci↗

arXiv2021

CASE21: Uniting Non-Empirical and Semi-Empirical Density Functional Approximation Strategies using Constraint-Based Regularization

In this work, we present a general framework that unites the two primary strategies for constructing density functional approximations (DFAs): non-empirical (NE) constraint satisfaction and semi-empirical (SE) data-driven optimization. The proposed method employs B-splines -- bell-shaped spline functions with compact support -- to construct each inhomogeneity correction factor (ICF). This choice offers several distinct advantages over a polynomial basis by enabling explicit enforcement of linear and non-linear constraints as well as ICF smoothness using Tikhonov regularization and penalized B-splines (P-splines). As proof of concept, we use this approach to construct CASE21 -- a Constrained And Smoothed semi-Empirical hybrid generalized gradient approximation that completely satisfies all but one constraint (and partially satisfies the remaining one) met by the PBE0 NE-DFA and exhibits enhanced performance across a diverse set of chemical properties. As such, we argue that the paradigm presented herein maintains the physical rigor and transferability of NE-DFAs while leveraging high-quality quantum-mechanical data to improve performance.

physics.chem-ph↗

arXiv2021

Selected Columns of the Density Matrix in an Atomic Orbital Basis I: An Intrinsic and Non-Iterative Orbital Localization Scheme for the Occupied Space

We extend the selected columns of the density matrix (SCDM) methodology [J. Chem. Theory Comput. 2015, 11, 1463--1469]---a non-iterative procedure for generating localized occupied orbitals for condensed-phase systems---to the construction of local molecular orbitals (LMOs) in systems described using non-orthogonal atomic orbital (AO) basis sets. In particular, we introduce three different variants of SCDM (referred to as SCDM-M, SCDM-L, and SCDM-G) that can be used in conjunction with the standard AO basis sets. The SCDM-M and SCDM-L variants are based on the Mulliken and L{ö}wdin representations of the density matrix, and are tantamount to selecting a well-conditioned set of projected atomic orbitals (PAOs) and projected (symmetrically-) orthogonalized atomic orbitals (POAOs), respectively, as proto-LMOs. The SCDM-G variant leverages a real-space (grid) representation of the wavefunction to select a set of well-conditioned proto-LMOs. A detailed comparative analysis reveals that the LMOs generated by these three SCDM variants are robust, comparable in orbital locality to those produced with the iterative Boys or Pipek-Mezey (PM) localization schemes, and are agnostic towards any single orbital locality metric. Although all three SCDM variants are based on the density matrix, we find that the character of the generated LMOs can differ significantly between SCDM-M, SCDM-L, and SCDM-G. In this regard, only the grid-based SCDM-G procedure (like PM) generates LMOs that qualitatively preserve $σ\text{-}π$ symmetry and are well-aligned with chemical intuition. While the direct and standalone use of SCDM-generated LMOs should suffice for most applications, our findings also suggest that the use of these orbitals as an unbiased and cost-effective (initial) guess also has the potential to improve the convergence of iterative orbital localization schemes.

physics.chem-ph↗

arXiv2021

Enabling Large-Scale Condensed-Phase Hybrid Density Functional Theory Based $Ab$ $Initio$ Molecular Dynamics I: Theory, Algorithm, and Performance

By including a fraction of exact exchange (EXX), hybrid functionals reduce the self-interaction error in semi-local density functional theory (DFT), and thereby furnish a more accurate and reliable description of the electronic structure in systems throughout biology, chemistry, physics, and materials science. However, the high computational cost associated with the evaluation of all required EXX quantities has limited the applicability of hybrid DFT in the treatment of large molecules and complex condensed-phase materials. To overcome this limitation, we have devised a linear-scaling yet formally exact approach that utilizes a local representation of the occupied orbitals (e.g., maximally localized Wannier functions, MLWFs) to exploit the sparsity in the real-space evaluation of the quantum mechanical exchange interaction in finite-gap systems. In this work, we present a detailed description of the theoretical and algorithmic advances required to perform MLWF-based ab initio molecular dynamics (AIMD) simulations of large-scale condensed-phase systems at the hybrid DFT level. We provide a comprehensive description of the exx algorithm, which is currently implemented in the Quantum ESPRESSO program and employs a hybrid MPI/OpenMP parallelization scheme to efficiently utilize high-performance computing (HPC) resources. This is followed by a critical assessment of the accuracy and parallel performance of this approach when performing AIMD simulations of liquid water in the canonical ensemble. With access to HPC resources, we demonstrate that exx enables hybrid DFT based AIMD simulations of condensed-phase systems containing 500-1000 atoms with a walltime cost that is comparable to semi-local DFT. In doing so, exx takes us closer to routinely performing AIMD simulations of large-scale condensed-phase systems for sufficiently long timescales at the hybrid DFT level of theory.

physics.comp-ph↗

arXiv2021

Enabling Large-Scale Condensed-Phase Hybrid Density Functional Theory Based $Ab$ $Initio$ Molecular Dynamics II: Extensions to the Isobaric-Isoenthalpic and Isobaric-Isothermal Ensembles

In the previous paper of this series [JCTC 2020, 16, 3757], we presented a theoretical and algorithmic framework based on a localized representation of the occupied space that exploits the inherent sparsity in the real-space evaluation of the EXX interaction in finite-gap systems. This was accompanied by a detailed description of exx, a massively parallel hybrid MPI/OpenMP implementation of this approach in Quantum ESPRESSO that enables linear-scaling hybrid DFT based AIMD in the NVE/NVT ensembles of condensed-phase systems containing 500--1000 atoms (in fixed orthorhombic cells) with a wall time cost comparable to semi-local DFT. In this work, we extend exx to enable hybrid DFT based AIMD of large-scale condensed-phase systems with general and fluctuating cells in the NpH/NpT ensembles. Our theoretical extension includes an analytical derivation of the EXX contribution to the stress tensor for systems in general cells with a computational complexity that scales linearly with system size. The corresponding algorithmic extensions to exx include optimized routines that: (i) handle static/fluctuating cells with non-orthogonal lattice symmetries, (ii) solve Poisson's equation in general cells via an automated selection of the auxiliary grid directions in the Natan-Kronik representation of the discrete Laplacian operator, and (iii) evaluate the EXX contribution to the stress tensor. We also critically assess the computational performance of the extended exx module across several different HPC architectures via case studies on ice Ih, II, and III as well as ambient liquid water. We find that the extended exx can evaluate the EXX contribution to the stress tensor with negligible cost (< 1%) and remains highly scalable, thereby bringing us another step closer to routinely performing hybrid DFT based AIMD for large-scale condensed-phase systems across a wide range of thermodynamic conditions.

cond-mat.mtrl-sci↗

arXiv2021

NENCI-2021 Part I: A Large Benchmark Database of Non-Equilibrium Non-Covalent Interactions Emphasizing Close Intermolecular Contacts

In this work, we present NENCI-2021, a benchmark database of approximately $8,000$ non-equilibrium non-covalent interaction energies for a large and diverse selection of intermolecular complexes of biological and chemical relevance. To meet the growing demand for large and high-quality quantum mechanical data in the chemical sciences, NENCI-2021 starts with the $101$ molecular dimers in the widely used S66 and S101 databases, and extends the scope of these works by: (i) including $40$ cation- and anion-$π$ complexes, a fundamentally important class of non-covalent interactions (NCIs) that are found throughout nature and pose a substantial challenge to theory, and (ii) systematically sampling all $141$ intermolecular potential energy surfaces (PES) by simultaneously varying the intermolecular distance and intermolecular angle in each dimer. Designed with an emphasis on close contacts, the complexes in NENCI-2021 were generated by sampling seven intermolecular distances along each PES (ranging from $0.7\times\mathrm{-}1.1\times$ the equilibrium separation) as well as nine intermolecular angles per distance (five for each ion-$π$ complex), yielding an extensive database of $7,763$ benchmark intermolecular interaction energies ($E_{\rm int}$) obtained at the CCSD(T)/CBS level of theory. In addition, a wide range of intermolecular atom-pair distances are also present in NENCI-2021, where close intermolecular contacts involving atoms that are located within the so-called van der Waals envelope are prevalent -- these interactions in particular pose an enormous challenge for molecular modeling and are observed in many important chemical and biological systems. A detailed SAPT-based energy decomposition analysis also confirms the diverse and comprehensive nature of the intermolecular binding motifs present in NENCI-2021.

physics.chem-ph↗

arXiv2017

Coherent Atomically-Thin Superlattices with Engineered Strain

Epitaxy forms the basis of modern electronics and optoelectronics. We report coherent atomically-thin superlattices, in which different transition metal dichalcogenide monolayers--despite large lattice mismatches--are repeated and integrated without dislocations. Grown by a novel omnidirectional epitaxy, these superlattices display fully-matched lattice constants across heterointerfaces while maintaining a surprisingly isotropic lattice structure and triangular symmetry. This strong epitaxial strain is precisely engineered via the nanoscale supercell dimensions, thereby enabling broad tuning of the optical properties and producing photoluminescence peak shifts as large as 250 meV. We present theoretical models to explain this coherent growth as well as the energetic interplay governing the flat-rippled configuration space in these strained monolayers. Such coherent superlattices provide novel building blocks with targeted functionalities at the atomically-thin monolayer limit.

cond-mat.mtrl-sci↗

arXiv2012

Interatomic Methods for the Dispersion Energy Derived from the Adiabatic Connection Fluctuation-Dissipation Theorem

Interatomic pairwise methods are currently among the most popular and accurate ways to include dispersion energy in density functional theory (DFT) calculations. However, when applied to more than two atoms, these methods are still frequently perceived to be based on \textit{ad hoc} assumptions, rather than a rigorous derivation from quantum mechanics. Starting from the adiabatic connection fluctuation-dissipation (ACFD) theorem, an exact expression for the electronic exchange-correlation energy, we demonstrate that the pairwise interatomic dispersion energy for an arbitrary collection of isotropic polarizable dipoles emerges from the second-order expansion of the ACFD formula. Moreover, for a system of quantum harmonic oscillators coupled through a dipole--dipole potential, we prove the equivalence between the full interaction energy obtained from the Hamiltonian diagonalization and the ACFD correlation energy in the random-phase approximation. This property makes the Hamiltonian diagonalization an efficient method for the calculation of the many-body dispersion energy. In addition, we show that the switching function used to damp the dispersion interaction at short distances arises from a short-range screened Coulomb potential, whose role is to account for the spatial spread of the individual atomic dipole moments. By using the ACFD formula we gain a deeper understanding of the approximations made in the interatomic pairwise approaches, providing a powerful formalism for further development of accurate and efficient methods for the calculation of the dispersion energy.

physics.chem-ph↗