arXiv subjects

Robert Ghrist

Publications and source records attributed to Robert Ghrist.

At least 37 records · Page 2Linked to original sources

arXiv2022

Persistent Extension and Analogous Bars: Data-Induced Relations Between Persistence Barcodes

A central challenge in topological data analysis is the interpretation of barcodes. The classical algebraic-topological approach to interpreting homology classes is to build maps to spaces whose homology carries semantics we understand and then to appeal to functoriality. However, we often lack such maps in real data; instead, we must rely on a cross-dissimilarity measure between our observations of a system and a reference. In this paper, we develop a pair of computational homological algebra approaches for relating persistent homology classes and barcodes: persistent extension, which enumerates potential relations between cycles from two complexes built on the same vertex set, and the method of analogous bars, which utilizes persistent extension and the witness complex built from a cross-dissimilarity measure to provide relations across systems. We provide an implementation of these methods and demonstrate their use in comparing cycles between two samples from the same metric space and determining whether topology is maintained or destroyed under clustering and dimensionality reduction.

math.AT↗

arXiv2021

Saecular persistence

A persistence module is a functor $f: \mathbf{I} \to \mathsf{E}$, where $\mathbf{I}$ is the poset category of a totally ordered set. This work introduces saecular decomposition: a categorically natural method to decompose $f$ into simple parts, called interval modules. Saecular decomposition exists under generic conditions, e.g., when $\mathbf{I}$ is well ordered and $\mathsf{E}$ is a category of modules or groups. This represents a substantial generalization of existing factorizations of 1-parameter persistence modules, leading to, among other things, persistence diagrams not only in homology, but in homotopy. Applications of saecular decomposition include inverse and extension problems involving filtered topological spaces, the 1-parameter generalized persistence diagram, and the Leray-Serre spectral sequence. Several examples -- including cycle representatives for generalized barcodes -- hold special significance for scientific applications. The key tools in this approach are modular and distributive order lattices, combined with Puppe exact categories.

math.CT↗

arXiv2021

A Temporal Logic-Based Hierarchical Network Connectivity Controller

In this paper, we consider networks of static sensors with integrated sensing and communication capabilities. The goal of the sensors is to propagate their collected information to every other agent in the network and possibly a human operator. Such a task requires constant communication among all agents which may result in collisions and congestion in wireless communication. To mitigate this issue, we impose locally non-interfering connectivity constraints that must be respected by every agent. We show that these constraints along with the requirement of propagating information in the network can be captured by a Linear Temporal Logic (LTL) framework. Existing temporal logic control synthesis algorithms can be used to design correct-by-construction communication schedules that satisfy the considered LTL formula. Nevertheless, such approaches are centralized and scale poorly with the size of the network. We propose a hierarchical LTL-based algorithm that designs communication schedules that determine which agents should communicate while maximizing network usage. We show that the proposed algorithm is complete and demonstrate its efficiency and scalability through analysis and numerical experiments.

eess.SY↗

arXiv2021

Cellular Sheaves of Lattices and the Tarski Laplacian

This paper initiates a discrete Hodge theory for cellular sheaves taking values in a category of lattices and Galois connections. The key development is the Tarski Laplacian, an endomorphism on the cochain complex whose fixed points yield a cohomology that agrees with the global section functor in degree zero. This has immediate applications in consensus and distributed optimization problems over networks and broader potential applications.

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arXiv2020

Quiver Signal Processing (QSP)

In this paper we state the basics for a signal processing framework on quiver representations. A quiver is a directed graph and a quiver representation is an assignment of vector spaces to the nodes of the graph and of linear maps between the vector spaces associated to the nodes. Leveraging the tools from representation theory, we propose a signal processing framework that allows us to handle heterogeneous multidimensional information in networks. We provide a set of examples where this framework provides a natural set of tools to understand apparently hidden structure in information. We remark that the proposed framework states the basis for building graph neural networks where information can be processed and handled in alternative ways.

eess.SP↗

arXiv2020

Path Signatures on Lie Groups

Path signatures are powerful nonparametric tools for time series analysis, shown to form a universal and characteristic feature map for Euclidean valued time series data. We lift the theory of path signatures to the setting of Lie group valued time series, adapting these tools for time series with underlying geometric constraints. We prove that this generalized path signature is universal and characteristic. To demonstrate universality, we analyze the human action recognition problem in computer vision, using $SO(3)$ representations for the time series, providing comparable performance to other shallow learning approaches, while offering an easily interpretable feature set. We also provide a two-sample hypothesis test for Lie group-valued random walks to illustrate its characteristic property. Finally we provide algorithms and a Julia implementation of these methods.

cs.CV↗

arXiv2020

Opinion Dynamics on Discourse Sheaves

We introduce a novel class of Laplacians and diffusion dynamics on discourse sheaves as a model for network dynamics, with application to opinion dynamics on social networks. These sheaves are algebraic data structures tethered to a network (or more general space) that can represent various modes of communication, including selective opinion modulation and lying. After introducing the sheaf model, we develop a sheaf Laplacian in this context and show how to evolve both opinions and communications with diffusion dynamics over the network. Issues of controllability, reachability, bounded confidence, and harmonic extension are addressed using this framework.

math.DS↗

arXiv2020

Persistence by Parts: Multiscale Feature Detection via Distributed Persistent Homology

A method is presented for the distributed computation of persistent homology, based on an extension of the generalized Mayer-Vietoris principle to filtered spaces. Cellular cosheaves and spectral sequences are used to compute global persistent homology based on local computations indexed by a scalar field. These techniques permit computation localized not merely by geography, but by other features of data points, such as density. As an example of the latter, the construction is used in the multi-scale analysis of point clouds to detect features of varying sizes that are overlooked by standard persistent homology.

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arXiv2019

Toward a Spectral Theory of Cellular Sheaves

This paper outlines a program in what one might call spectral sheaf theory --- an extension of spectral graph theory to cellular sheaves. By lifting the combinatorial graph Laplacian to the Hodge Laplacian on a cellular sheaf of vector spaces over a regular cell complex, one can relate spectral data to the sheaf cohomology and cell structure in a manner reminiscent of spectral graph theory. This work gives an exploratory introduction, and includes results on eigenvalue interlacing, sparsification, effective resistance, and sheaf approximation. These results and subsequent applications are prefaced by an introduction to cellular sheaves and Laplacians.

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arXiv2018

Minimal Unimodal Decompositions on Trees

The decomposition of a density function on a domain into a minimal sum of unimodal components is a fundamental problem in statistics, leading to the topological invariant of unimodal category of a density. This paper gives an efficient algorithm for the construction of a minimal unimodal decomposition of a tame density function on a finite metric tree.

math.AT↗

arXiv2018

Persistent Homology and Euler Integral Transforms

The Euler calculus -- an integral calculus based on Euler characteristic as a valuation on constructible functions -- is shown to be an incisive tool for answering questions about injectivity and invertibility of recent transforms based on persistent homology for shape characterization.

math.AT↗

arXiv2018

The importance of the whole: topological data analysis for the network neuroscientist

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying sets of node pairs that are densely connected and that collectively support brain function. Yet the restriction to pairwise interactions prevents us from realizing intrinsic topological features such as cavities within the interconnection structure that may be just as crucial for proper function. To detect and quantify these topological features we must turn to methods from algebraic topology that encode data as a simplicial complex built of sets of interacting nodes called simplices. On this substrate, we can then use the relations between simplices and higher-order connectivity to expose cavities within the complex, thereby summarizing its topological nature. Here we provide an introduction to persistent homology, a fundamental method from applied topology that builds a global descriptor of system structure by chronicling the evolution of cavities as we move through a combinatorial object such as a weighted network. We detail the underlying mathematics and perform demonstrative calculations on the mouse structural connectome, electrical and chemical synapses in \textit{C. elegans}, and genomic interaction data. Finally we suggest avenues for future work and highlight new advances in mathematics that appear ready for use in revealing the architecture and function of neural systems.

q-bio.QM↗

arXiv2017

Matroid Filtrations and Computational Persistent Homology

This technical report introduces a novel approach to efficient computation in homological algebra over fields, with particular emphasis on computing the persistent homology of a filtered topological cell complex. The algorithms here presented rely on a novel relationship between discrete Morse theory, matroid theory, and classical matrix factorizations. We provide background, detail the algorithms, and benchmark the software implementation in the Eirene package.

math.AT↗

arXiv2017

Path Homotopy Invariants and their Application to Optimal Trajectory Planning

We consider the problem of optimal path planning in different homotopy classes in a given environment. Though important in robotics applications, path-planning with reasoning about homotopy classes of trajectories has typically focused on subsets of the Euclidean plane in the robotics literature. The problem of finding optimal trajectories in different homotopy classes in more general configuration spaces (or even characterizing the homotopy classes of such trajectories) can be difficult. In this paper we propose automated solutions to this problem in several general classes of configuration spaces by constructing presentations of fundamental groups and giving algorithms for solving the \emph{word problem} in such groups. We present explicit results that apply to knot and link complements in 3-space, discuss how to extend to cylindrically-deleted coordination spaces of arbitrary dimension, and also present results in the coordination space of robots navigating on an Euclidean plane.

cs.RO↗

arXiv2016

Positive Alexander Duality for Pursuit and Evasion

Considered is a class of pursuit-evasion games, in which an evader tries to avoid detection. Such games can be formulated as the search for sections to the complement of a coverage region in a Euclidean space over a timeline. Prior results give homological criteria for evasion in the general case that are not necessary and sufficient. This paper provides a necessary and sufficient positive cohomological criterion for evasion in a general case. The principal tools are (1) a refinement of the Cech cohomology of a coverage region with a positive cone encoding spatial orientation, (2) a refinement of the Borel-Moore homology of the coverage gaps with a positive cone encoding time orientation, and (3) a positive variant of Alexander Duality. Positive cohomology decomposes as the global sections of a sheaf of local positive cohomology over the time axis; we show how this decomposition makes positive cohomology computable as a linear program.

math.AT↗

arXiv2016

Two's company, three (or more) is a simplex: Algebraic-topological tools for understanding higher-order structure in neural data

The language of graph theory, or network science, has proven to be an exceptional tool for addressing myriad problems in neuroscience. Yet, the use of networks is predicated on a critical simplifying assumption: that the quintessential unit of interest in a brain is a dyad -- two nodes (neurons or brain regions) connected by an edge. While rarely mentioned, this fundamental assumption inherently limits the types of neural structure and function that graphs can be used to model. Here, we describe a generalization of graphs that overcomes these limitations, thereby offering a broad range of new possibilities in terms of modeling and measuring neural phenomena. Specifically, we explore the use of \emph{simplicial complexes}, a theoretical notion developed in the field of mathematics known as algebraic topology, which is now becoming applicable to real data due to a rapidly growing computational toolset. We review the underlying mathematical formalism as well as the budding literature applying simplicial complexes to neural data, from electrophysiological recordings in animal models to hemodynamic fluctuations in humans. Based on the exceptional flexibility of the tools and recent ground-breaking insights into neural function, we posit that this framework has the potential to eclipse graph theory in unraveling the fundamental mysteries of cognition.

q-bio.NC↗

arXiv2015

Discrete Morse theory for computing cellular sheaf cohomology

Sheaves and sheaf cohomology are powerful tools in computational topology, greatly generalizing persistent homology. We develop an algorithm for simplifying the computation of cellular sheaf cohomology via (discrete) Morse-theoretic techniques. As a consequence, we derive efficient techniques for distributed computation of (ordinary) cohomology of a cell complex.

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arXiv2013

Hadwiger's Theorem for Definable Functions

Hadwiger's Theorem states that Euclidean-invariant convex-continuous valuations of definable sets are linear combinations of intrinsic volumes. We lift this result from sets to data distributions over sets, specifically, to definable real-valued functions on n-dimensional Euclidean space. This generalizes intrinsic volumes to (dual pairs) of non-linear valuations on functions and provides a dual pair of Hadwiger classification theorems.

math.DG↗