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Roberto Alonso-Matilla

Publications and source records attributed to Roberto Alonso-Matilla.

3 recordsLinked to original sources

Transport and dispersion of active particles in periodic porous media

The transport of self-propelled particles such as bacteria and phoretic swimmers through crowded heterogeneous environments is relevant to many natural and engineering processes, from biofilm formation and contamination processes to transport in soils and biomedical devices. While there has been experimental progress, a theoretical understanding of mean transport properties in these systems has been lacking. In this work, we apply generalized Taylor dispersion theory to analyze the long-time statistics of an active self-propelled Brownian particle transported under an applied flow through the interstices of a periodic lattice that serves as an idealization of a porous medium. Our theoretical model, which we validate against Brownian dynamics simulations, is applied to unravel the roles of motility, fluid flow, and lattice geometry on asymptotic mean velocity and dispersivity. In weak flows, transport is dominated by active dispersion, which results from self-propulsion in the presence of noise and is hindered by the obstacles that act as entropic barriers. In strong flows, shear-induced Taylor dispersion becomes the dominant mechanism for spreading, with pillars now acting as regions of shear production that enhance dispersion. The interplay of these two effects leads to complex and unexpected trends, such as a non-monotonic dependence of axial dispersivity on flow strength and a reduction in dispersion due to swimming activity in strong flows. Brownian dynamics are used to cast light on the pre-asymptotic regime, where tailed distributions are observed in agreement with recent experiments on motile micro-organisms. Our results also highlight the subtle effects of pillar shape, which can be used to control the magnitude of dispersion and to drive a net particle migration in quiescent systems.

physics.flu-dyn

Geometric control of active collective motion

Recent experimental studies have shown that confinement can profoundly affect self-organization in semi-dilute active suspensions, leading to striking features such as the formation of steady and spontaneous vortices in circular domains and the emergence of unidirectional pumping motions in periodic racetrack geometries. Motivated by these findings, we analyze the two-dimensional dynamics in confined suspensions of active self-propelled swimmers using a mean-field kinetic theory where conservation equations for the particle configurations are coupled to the forced Navier-Stokes equations for the self-generated fluid flow. In circular domains, a systematic exploration of the parameter space casts light on three distinct states: equilibrium with no flow, stable vortex, and chaotic motion, and the transitions between these are explained and predicted quantitatively using a linearized theory. In periodic racetracks, similar transitions from equilibrium to net pumping to traveling waves to chaos are observed in agreement with experimental observations and are also explained theoretically. Our results underscore the subtle effects of geometry on the morphology and dynamics of emerging patterns in active suspensions and pave the way for the control of active collective motion in microfluidic devices.

physics.flu-dyn

On the distribution and swim pressure of run-and-tumble particles in confinement

The spatial and orientational distribution in a dilute active suspension of non-Brownian run-and-tumble spherical swimmers confined between two planar hard walls is calculated theoretically. Using a kinetic model based on coupled bulk/surface probability density functions, we demonstrate the existence of a concentration wall boundary layer with thickness scaling with the run length, the absence of polarization throughout the channel, and the presence of sharp discontinuities in the bulk orientation distribution in the neighborhood of orientations parallel to the wall in the near-wall region. Our model is also applied to calculate the swim pressure in the system, which approaches the previously proposed ideal-gas behavior in wide channels but is found to decrease in narrow channels as a result of confinement. Monte-Carlo simulations are also performed for validation and show excellent quantitative agreement with our theoretical predictions.

physics.flu-dyn