SearcharxivSearch

arXiv subjects

Roberto Natalini

Publications and source records attributed to Roberto Natalini.

At least 19 recordsLinked to original sources

A vectorial lattice Boltzmann scheme for the incompressible Navier-Stokes equations

We introduce a second-order accurate vectorial lattice Boltzmann scheme for the incompressible Navier-Stokes system, inspired by a discrete-velocity kinetic approximation proposed by Carfora and Natalini [ESAIM: M2AN, 42(1), 93-112, 2008]. Advantages and drawbacks compared to relaxation schemes are investigated by providing spectral analyses in the linearized case, and numerical validations on the genuinely non-linear problem.

math.NA

Numerical study on a multi-dimensional pressureless Euler-type model with non-local interactions and chemotaxis for collective cell migration

In this paper we propose a numerical study of macroscopic models for collective cell migration, focusing on a multi-dimensional pressureless Euler-type model with non-local interactions coupled with chemotaxis, rigorously derived from microscopic dynamics. Different mechanical interactions are investigated, including attraction-repulsion effects. Moreover, the model is extended to the case of different populations of interacting cells. The validity of such macroscopic model and its agreement with the microscopic dynamics is finally assessed through a parameter estimation analysis in a specific setting.

math.NA

A relaxation scheme for the equations of isentropic gas dynamics on a network with jump transmission conditions

In this paper we propose a new numerical scheme of relaxation type to approximate the Euler equations of isentropic gas dynamics on the arcs of a network. At the junction mass conservation and a jump transmission condition on the density are given, and a new solver is introduced to deal with both subsonic and supersonic cases. Consistency properties of the solver are proven and numerical tests are displayed to show its good performance also with respect to other possible solvers.

math.NA

An Integro-differential Model of Cadmium Yellow Photodegradation

Many paintings from the 19th century have exhibited signs of fading and discoloration, often linked to cadmium yellow, a pigment widely used by artists during that time. In this work, we develop a mathematical model of the cadmium sulfide photocatalytic reaction responsible for these damages. By employing non-local integral operators, we capture the interplay between chemical processes and environmental factors, offering a detailed representation of the degradation mechanisms. Furthermore, we present a second order positivity-preserving numerical method designed to accurately simulate the phenomenon and ensure reliable predictions across different scenarios, along with a comprehensive sensitivity analysis of the model.

math.NA

A model for membrane degradation using a gelatin invadopodia assay

One of the most crucial and lethal characteristics of solid tumors is represented by the increased ability of cancer cells to migrate and invade other organs during the so-called metastatic spread. This is allowed thanks to the production of matrix metalloproteinases (MMPs), enzymes capable of degrading a type of collagen abundant in the basal membrane separating the epithelial tissue from the connective one. In this work, we employ a synergistic experimental and mathematical modelling approach to explore the invasion process of tumor cells. A athematical model composed of reaction-diffusion equations describing the evolution of the tumor cells density on a gelatin substrate, MMPs enzymes concentration and the degradation of the gelatin is proposed. This is completed with a calibration strategy. We perform a sensitivity analysis and explore a parameter estimation technique both on synthetic and experimental data in order to find the optimal parameters that describe the in vitro experiments. A comparison between numerical and experimental solutions ends the work.

q-bio.TO

Microscopic, kinetic and hydrodynamic hybrid models of collective motions withchemotaxis: a numerical study

A general class of hybrid models has been introduced recently, gathering the advantages multiscale descriptions. Concerning biological applications, the particular coupled structure fits to collective cell migrations and pattern formation scenarios. In this context, cells are modelled as discrete entities and their dynamics is given by ODEs, while the chemical signal influencing the motion is considered as a continuous signal which solves a diffusive equation. From the analytical point of view, this class of model has been proved to have a mean-field limit in the Wasserstein distance towards a system given by the coupling of a Vlasov-type equation with the chemoattractant equation. Moreover, a pressureless nonlocal Euler-type system has been derived for these models, rigorously equivalent to the Vlasov one for monokinetic initial data. In the present paper, we present a numerical study of the solutions to the Vlasov and Euler systems, exploring general settings for inital data, far from the monokinetic ones.

math.NA

Parameter estimation tools for cardiovascular flow modeling of fetal circulation

Usually, clinicians assess the correct hemodynamic behavior and fetal well-being during the gestational age thanks to their professional expertise, with the support of some indices defined for Doppler fetal waveforms. Although this approach has demonstrated to be satisfactory in the most of the cases, it can be largely improved with the aid of more advanced techniques, i.e. numerical analysis and simulation. Another key aspect limiting the analysis is that clinicians rely on a limited number of Doppler waveforms observed during the clinical examination. Moreover, the use of simple velocimetric indicators for deriving possible malfunctions of the fetal cardiovascular system can be misleading, being the fetal assessment based on a mere statistical analysis (comparison with physiological ranges), without any deep physio-pathological interpretations of the observed hemodynamic changes. The use of a lumped mathematical model, properly describing the entire fetal cardiovascular system, would be absolutely helpful in this context: by targeting physiological model parameters on the clinical reliefs, we could gain deep insights of the full system. The calibration of model parameters may also help in formulating patient-specific early diagnosis of fetal pathologies. In the present work, we develop a robust parameter estimation algorithm based on two different optimization methods using synthetic data. In particular, we deal with the inverse problem of recognizing the most significant parameters of a lumped fetal circulation model by using time tracings of fetal blood flows and pressures obtained by the model. This represents a first methodological work for the assessment of the accuracy in the identification of model parameters of an algorithm based on closed-loop mathematical model of fetal circulation and opens the way to the application of the algorithm to clinical data.

physics.med-ph

Nonresonant bilinear forms for partially dissipative hyperbolic systems violating the Shizuta-Kawashima condition

In the context of hyperbolic systems of balance laws, the Shizuta-Kawashima coupling condition guarantees that all the variables of the system are dissipative even though the system is not totally dissipative. Hence it plays a crucial role in terms of sufficient conditions for the global in time existence of classical solutions. However, it is easy to find physically based models that do not satisfy this condition, especially in several space dimensions. In this paper, we consider two simple examples of partially dissipative hyperbolic systems violating the Shizuta-Kawashima condition ([SK]) in 3D, such that some eigendirections do not exhibit dissipation at all. We prove that, if the source term is non resonant (in a suitable sense) in the direction where dissipation does not play any role, then the formation of singularities is prevented, despite the lack of dissipation, and the smooth solutions exist globally in time. The main idea of the proof is to couple Green function estimates for weakly dissipative hyperbolic systems with the space-time resonance analysis for dispersive equations introduced by Germain, Masmoudi and Shatah. More precisely, the partially dissipative hyperbolic systems violating [SK] are endowed, in the non-dissipative directions, with a special structure of the nonlinearity, the so-called Nonresonant Bilinear Form for the wave equation (see Pusateri and Shatah, CPAM 2013).

math.AP

The Mean-Field limit for hybrid models of collective motions with chemotaxis

In this paper we study a general class of hybrid mathematical models of collective motions of cells under the influence of chemical stimuli. The models are hybrid in the sense that cells are discrete entities given by ODE, while the chemoattractant is considered as a continuous signal which solves a diffusive equation. For this model we prove the mean-field limit in the Wasserstein distance to a system given by the coupling of a Vlasov-type equation with the chemoattractant equation. Our approach and results are not based on empirical measures, but rather on marginals of large number of individuals densities, and we show the limit with explicit bounds, by proving also existence and uniqueness for the limit system. In the monokinetic case we derive new pressureless nonlocal Euler-type model with chemotaxis.

math.AP

Asymptotic behavior of 2D stably stratified fluids with a damping term in the velocity equation

This article is concerned with the asymptotic behavior of the two-dimensional inviscid Boussinesq equations with a damping term in the velocity equation. Precisely, we provide the time-decay rates of the smooth solutions to that system. The key ingredient is a careful analysis of the Green kernel of the linearized problem in Fourier space, combined with bilinear estimates and interpolation inequalities for handling the nonlinearity.

math.AP

On The Mean Field limit for Cucker-Smale models

In this note, we consider generalizations of the Cucker-Smale dynamical system and we derive rigorously in Wasserstein's type topologies the mean-field limit (and propagation of chaos) to the Vlasov-type equation introduced in [12].Unlike previous results on the Cucker-Smale model, our approach is not based on the empirical measures, but, using an Eulerian point of view introduced in [8] in the Hamiltonian setting, we show the limit providing explicit constants.%Using an Eulerian point of view introduced in \cite{gmp} in the Hamiltonian setting, we don't use empirical measures and provide explicit constants. Moreover, for non strictly Cucker-Smale particles dynamics, we also give an insight on what induces a flocking behavior of the solution to the Vlasov equation to the - unknown a priori - flocking properties of the original particle system.

math.AP

Vanishing viscosity approximation for linear transport equations on finite starshaped networks

In this paper we study linear parabolic equations on a finite oriented starshaped network; the equations are coupled by transmission conditions set at the inner node, which do not impose continuity on the unknown. We consider this problem as a parabolic approximation of a set of first order linear transport equations on the network and we prove that, when the diffusion coefficient vanishes, the family of solutions converges to the unique solution to the first order equations and satisfies suitable transmission conditions at the inner node, which are determined by the parameters appearing in the parabolic transmission conditions.

math.AP

Convergence of a vector BGK approximation for the incompressible Navier-Stokes equations

We present a rigorous convergence result for the smooth solutions to a singular semilinear hyperbolic approximation, a vector BGK model, to the solutions to the incompressible Navier-Stokes equations in Sobolev spaces. Our proof is based on the use of a constant right symmetrizer, weighted with respect to the parameter of the singular pertubation system. This symmetrizer provides a conservative-dissipative form for the system and this allow us to perform uniform energy estimates and to get the convergence by compactness.

math.AP

Numerical Optimization of Plasmid DNA Delivery Combined with Hyaluronidase Injection for Electroporation Protocol

The definition of an innovative therapeutic protocol requires the fine tuning of all the involved operations in order to maximize the efficiency. In some cases, the price of the experiments, or their duration, represents a great obstacle and the full potential of the protocol risks to be reduced or even hidden by a non-optimal application. The implementation of a numerical model of the protocol may represent the solution, allowing a systematic exploration of all the different alternatives, shedding the light on the most promising combination and also identifying the key elements/parameters. In this paper, the injection of a plasmid, preceded by a hyaluronidase injection, is simulated through a mathematical model. Some key elements of the administration protocol are identified by means of a mathematical optimization procedure, maximizing the efficacy of the therapy. As a side effect of the extensive investigation, robust solutions able to reduce the effects of human errors in the administration are also obtained.

q-bio.QM

A mathematical and experimental study on iron rings formation in porous stones

In this interdisciplinary paper, we study the formation of iron precipitates - the so-called Liesegang rings - in Lecce stones in contact with iron source. These phenomena are responsible of exterior damages of lapideous artifacts, but also in the weakening of their structure. They originate in presence of water, determining the flow of carbonate compunds mixing with the iron ions and then, after a sequence of reactions and precipitation, leading to the formation of Liesegang rings. In order to model these phenomena observed in situ and in laboratory experiments, we propose a modification of the classical Keller-Rubinow model and show the results obtained with some numerical simulations, in comparison with the experimental tests. Our model is of interest for a better understanding of damage processes in monumental stones.

cond-mat.soft

A nonlinear model for marble sulphation including surface rugosity: theoretical and numerical results

We consider an evolution system describing the phenomenon of marble sulphation of a monument, accounting of the surface rugosity. We first prove a local in time well posedness result. Then, stronger assumptions on the data allow us to establish the existence of a global in time solution. Finally, we perform some numerical simulations that illustrate the main feature of the proposed model.

math.AP

A rare mutation model in a spatial heterogeneous environment: the Hawk and Dove game

We propose a stochastic model in evolutionary game theory where individuals (or subpopulations) can mutate changing their strategies randomly (but rarely) and explore the external environment. This environment affects the selective pressure by modifying the payoff arising from the interactions between strategies. We derive a Fokker-Plank integro-differential equation and provide Monte-Carlo simulations for the Hawks vs Doves game. In particular we show that, in some cases, taking into account the external environment favors the persistence of the low-fitness strategy.

q-bio.PE

Local existence of smooth solutions to multiphase models in two space dimensions

In this paper, we consider a class of models for multiphase fluids, in the framework of mixture theory. The considered system, in its more general form, contains both the gradient of a hydrostatic pressure, generated by an incompressibility constraint, and the gradient of a compressible pressure depending on the volume fractions of some of the different phases. To approach these systems, we define an approximation based on the \emph{Leray} projection, which involves the use of the \emph{Lax} symbolic symmetrizer for hyperbolic systems and paradifferential techniques. In two space dimensions, we prove its well-posedness and convergence to the unique classical solution to the original system. In the last part, we shortly discuss the difficulties in the three dimensional case.

math.AP