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Roger D. Amos

Publications and source records attributed to Roger D. Amos.

5 recordsLinked to original sources

Analysis of Chiral Oxirane Molecules in Preparation for Next Generation Telescopes: A Review, New Analysis, & a Chiral Molecule Database

Human biology has a preference for left-handed chiral molecules and an outstanding question is if this is imposed through astrophysical origins. We aim to evaluate the known information about chiral molecules within astrophysical and astrochemical databases, evaluate chemical modeling accuracy, and use high-level CCSD(T) calculations to characterize propylene oxide and other oxirane variants. By comparing these computational values with past laboratory experiments, we find a 99.9% similarity. We also have put together a new database dedicated to chiral molecules and variants of chiral molecules to assist in answering this question.

astro-ph.IM

Reliable density functional and G_0 W_0 approaches to the calculation of bandgaps in 2D materials

Optimizing density-functional theory (DFT) and G0W0 calculations present coupled problems as orbitals from DFT are needed as G0W0 starting points. Applied to 341 two-dimensional (2D) materials, we demonstrate that CAM-B3LYP provides minimal changes in bandgap (e.g., mean absolute deviation of 0.23 eV) when used to start G0W0 calculations, compared to traditional functionals such as PBE, PBE0, and HSE06 (1.07 eV, 1.48 eV, and 1.51 eV, respectively). CAM-B3LYP also delivers the smallest changes in orbital representation. These and other results indicate the suitability of CAM-B3LYP as a density-functional approach for modelling 2D materials, as well as for use in optimizing G0W0 calculations. Our findings parallel well established features of applications to molecules, as well as for spectroscopic applications involving 3D materials.

cond-mat.mtrl-sci

Gather -- a better way to codehack online

A virtual hands-on computer laboratory has been designed within the Gather online meeting platform. Gather's features such as spatial audio, private spaces and interactable objects offer scope for great improvements over currently used platforms, especially for small-group based teaching. We describe our experience using this virtual computer laboratory for a recent 'Python for Beginners' workshop held as part of the Software Sustainability Institute's 2022 Research Software Camp.

cs.HC

Accurate prediction of the properties of materials using the CAM-B3LYP Density Functional

Density functionals with asymptotic corrections to the long-range potential provide entry-level methods for calculations on molecules that can sustain charge transfer, but similar applications in Materials Science are rare. We describe an implementation of the CAM-B3LYP range-separated functional within the Vienna Ab-initio Simulation Package (VASP) framework, together with its analytical functional derivatives. Results obtained for eight representative materials: aluminum, diamond, graphene, silicon, NaCl, MgO, 2D h-BN and 3D h-BN, indicate that CAM-B3LYP predictions embody mean-absolute deviations (MAD) compared to HSE06 that are reduced by a factor of 6 for lattice parameters, 4 for quasiparticle band gaps, 3 for the lowest optical excitation energies, and 6 for exciton binding energies. Further, CAM-B3LYP appears competitive compared to ab initio G0W0 and Bethe-Salpeter equation (BSE) approaches. The CAM-B3LYP implementation in VASP was verified by comparison of optimized geometries and reaction energies for isolated molecules taken from the ACCDB database, evaluated in large periodic unit cells, to analogous results obtained using Gaussian basis sets. Using standard GW pseudopotentials and energy cutoffs for the plane-wave calculations and the aug-cc-pV5Z basis set for the atomic-basis ones, the MAD in energy for 1738 chemical reactions was 0.34 kcal mol-1, whilst for 480 unique bond lengths this was 0.0036 Å; these values reduced to 0.28 kcal mol-1 (largest error 0.94 kcal mol-1) and 0.0009 Å by increasing the plane-wave cuttoff energy to 850 eV.

cond-mat.mtrl-sci

Density functionals with asymptotic-potential corrections are required for the simulation of spectroscopic properties of materials

Five effects of correction of the asymptotic potential error in density functionals are identified that significantly improve calculated properties of molecular excited states involving charge-transfer character. Newly developed materials-science computational methods are used to demonstrate how these effects manifest in materials spectroscopy. Connection is made considering chlorophyll-a as a paradigm for molecular spectroscopy, 22 iconic materials as paradigms for 3D materials spectroscopy, and the VN- defect in hexagonal boron nitride as an example of the spectroscopy of defects in 2D materials pertaining to nanophotonics. Defects can equally be thought of as being "molecular" and "materials" in nature and hence bridge the realms of molecular and materials spectroscopies. It is concluded that the density functional HSE06, currently considered as the standard for accurate calculations of materials spectroscopy, should be replaced, in most instances, by the computationally similar but asymptotically corrected CAM-B3LYP functional, with some specific functionals for materials use only providing further improvements.

cond-mat.mtrl-sci