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Roman Shusterman

Publications and source records attributed to Roman Shusterman.

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Odors in olfactory bulb are defined by a short discrete temporal sequence: recognition by brute-force conversion to a spatial pattern (chunking)

Mitral cells, the principal neurons in the olfactory bulb, respond to odorants by firing bursts of action potentials called sharp events. A given cell produces a sharp event at a fixed phase during the sniff cycle in response to a given odor; different cells have different phases. The olfactory bulb response to an odor is thus a sequence of sharp events. Here, we show that sharp event onset is biased toward certain phases of the ongoing gamma frequency oscillation. Thus, the signature of an odor is a discrete sequence. The fact that this sequence is relatively short suggests a new class of "brute force" solutions to the problem of odor recognition: cortex may contain a small number of modules, each forming a persistent snapshot of what occurs in a certain gamma cycle. Towards the end of the sniff, the collection of these snapshots forms a spatial pattern that could be recognized by standard attractor-based network mechanisms. We demonstrate the feasibility of this solution with simulations of simple network architectures having modules that represent gamma-cycle specific information. Thus "brute force" solutions for converting a discrete temporal sequence into a spatial pattern (chunking) are neurally plausible.

q-bio.NC

Fluorescence Correlation Spectroscopy analysis of segmental dynamics in Actin filaments

We adapt Fluorescence Correlation spectroscopy (FCS) formalism to the studies of the dynamics of semi-flexible polymers and derive expressions relating FCS correlation function to the longitudinal and transverse mean square displacements of polymer segments. We use the derived expressions to measure the dynamics of actin filaments in two experimental situations: filaments labeled at distinct positions and homogeneously labeled filaments. Both approaches give consistent results and allow to measure the temporal dependence of the segmental mean-square displacement (MSD) over almost five decades in time, from ~0.04ms to 2s. These noninvasive measurements allow for a detailed quantitative comparison of the experimental data to the current theories of semi-flexible polymer dynamics. Good quantitative agreement is found between the experimental results and theories explicitly accounting for the hydrodynamic interactions between polymer segments.

cond-mat.soft