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Ronald Davis

Publications and source records attributed to Ronald Davis.

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Deep Learning with Coherent VCSEL Neural Networks

Deep neural networks (DNNs) are reshaping the field of information processing. With their exponential growth challenging existing electronic hardware, optical neural networks (ONNs) are emerging to process DNN tasks in the optical domain with high clock rates, parallelism and low-loss data transmission. However, to explore the potential of ONNs, it is necessary to investigate the full-system performance incorporating the major DNN elements, including matrix algebra and nonlinear activation. Existing challenges to ONNs are high energy consumption due to low electro-optic (EO) conversion efficiency, low compute density due to large device footprint and channel crosstalk, and long latency due to the lack of inline nonlinearity. Here we experimentally demonstrate an ONN system that simultaneously overcomes all these challenges. We exploit neuron encoding with volume-manufactured micron-scale vertical-cavity surface-emitting laser (VCSEL) transmitter arrays that exhibit high EO conversion (<5 attojoule/symbol with $V_\pi$=4 mV), high operation bandwidth (up to 25 GS/s), and compact footprint (<0.01 mm$^2$ per device). Photoelectric multiplication allows low-energy matrix operations at the shot-noise quantum limit. Homodyne detection-based nonlinearity enables nonlinear activation with instantaneous response. The full-system energy efficiency and compute density reach 7 femtojoules per operation (fJ/OP) and 25 TeraOP/(mm$^2\cdot$ s), both representing a >100-fold improvement over state-of-the-art digital computers, with substantially several more orders of magnitude for future improvement. Beyond neural network inference, its feature of rapid weight updating is crucial for training deep learning models. Our technique opens an avenue to large-scale optoelectronic processors to accelerate machine learning tasks from data centers to decentralized edge devices.

cs.ET

Principal trend analysis for time-course data with applications in genomic medicine

Time-course high-throughput gene expression data are emerging in genomic and translational medicine. Extracting interesting time-course patterns from a patient cohort can provide biological insights for further clinical research and patient treatment. We propose principal trend analysis (PTA) to extract principal trends of time-course gene expression data from a group of patients, and identify genes that make dominant contributions to the principal trends. Through simulations, we demonstrate the utility of PTA for dimension reduction, time-course signal recovery and feature selection with high-dimensional data. Moreover, PTA derives new insights in real biological and clinical research. We demonstrate the usefulness of PTA by applying it to longitudinal gene expression data of a circadian regulation system and burn patients. These applications show that PTA can extract interesting time-course trends with biological significance, which helps the understanding of biological mechanisms of circadian regulation systems as well as the recovery of burn patients. Overall, the proposed PTA approach will benefit the genomic medicine research. Our method is implemented into an R-package: PTA (Principal Trend Analysis).

stat.AP