Searcharxiv⌕ Search

arXiv subjects

Rosa Sinaasappel

Publications and source records attributed to Rosa Sinaasappel.

3 recordsLinked to original sources

Optimal Translocation of Living \& Active Filaments in Confinement

Active filament translocation through confined spaces is central to processes ranging from DNA transport through nanopores to cytoskeletal dynamics in cell migration. Here, we use living filamentous \textit{Tubifex tubifex} worms as a model system to investigate how activity and filament conformation govern transport in confinement. By tuning activity via temperature and tracking worm dynamics in a two-chamber geometry connected by a narrow bridge, we quantify their translocation behavior and conformational states. In contrast to passive polymers and filaments, we find that contour length has negligible influence on trapping dynamics, while activity and reorientation jointly control escape. Strikingly, translocation efficiency is maximized at an intermediate temperature ($20^\circ$C), where a balance between directed propulsion and rotational diffusion optimizes exploration. We show that trapping times are governed by the interplay between the timescale of conformational rearrangements and the conformational entropy, quantifying the diversity of accessible shapes. Simulations of tangentially driven active filaments quantitatively reproduce the experimental observations and provide a minimal physical framework to rationalize the existence of an optimal activity. More broadly, our results identify general principles governing active filament transport in confinement, with implications for both biological systems and the design of synthetic active slender objects.

cond-mat.soft↗

Locomotion of Active Polymerlike Worms in Porous Media

We investigate the locomotion of thin, living T. tubifex worms, which display active polymerlike behavior, within quasi-2D arrays of cylindrical pillars, examining varying spatial arrangements and densities. These active worms spread in crowded environments, with a dynamics dependent on both the concentration and arrangement of obstacles. In contrast to passive polymers, our results reveal that in disordered configurations, increasing the pillar density enhances the long-time diffusion of our active polymer-like worms, while we observe the opposite trend in ordered pillar arrays. We found that in disordered media, living worms reptate through available curvilinear tubes, whereas they become trapped within pores of ordered media. Intriguingly, we show that reducing the worm's activity significantly boosts its spread, enabling passive sorting of worms by activity level. Our experimental observations are corroborated through simulations of the tangentially driven polymer model with matched persistence length predicting the same trends.

cond-mat.soft↗

Worm Blobs as Entangled Living Polymers: From Topological Active Matter to Flexible Soft Robot Collectives

Recently, long and slender living worms have garnered significant interest because of their impressive ability to exhibit diverse emergent behaviors in highly entangled physical and topological conditions. These worms can form an active viscoelastic, three-dimensional soft entity known as the 'blob', which can behave like a solid, flow like a liquid, and even respond to external stimuli such as light to locomote or change shape. To understand the behavior of the blob, it is crucial to consider the high degree of conformational entanglement that individual units can achieve because of their high aspect ratio and tunable activity. This topologically active collective necessitates reevaluating established soft matter concepts in polymer physics to advance the development of active polymer-like materials. Our understanding of the complex emergent dynamics of the worm blob promises to catalyze further research into the behavior of entangled active polymers and guide the design of synthetic topological active matter and bioinspired tangling soft robot collectives.

cond-mat.soft↗