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Ross Maciejewski

Publications and source records attributed to Ross Maciejewski.

At least 37 records · Page 2Linked to original sources

Deceptive Fairness Attacks on Graphs via Meta Learning

We study deceptive fairness attacks on graphs to answer the following question: How can we achieve poisoning attacks on a graph learning model to exacerbate the bias deceptively? We answer this question via a bi-level optimization problem and propose a meta learning-based framework named FATE. FATE is broadly applicable with respect to various fairness definitions and graph learning models, as well as arbitrary choices of manipulation operations. We further instantiate FATE to attack statistical parity and individual fairness on graph neural networks. We conduct extensive experimental evaluations on real-world datasets in the task of semi-supervised node classification. The experimental results demonstrate that FATE could amplify the bias of graph neural networks with or without fairness consideration while maintaining the utility on the downstream task. We hope this paper provides insights into the adversarial robustness of fair graph learning and can shed light on designing robust and fair graph learning in future studies.

cs.LG↗

GeoLinter: A Linting Framework for Choropleth Maps

Visualization linting is a proven effective tool in assisting users to follow established visualization guidelines. Despite its success, visualization linting for choropleth maps, one of the most popular visualizations on the internet, has yet to be investigated. In this paper, we present GeoLinter, a linting framework for choropleth maps that assists in creating accurate and robust maps. Based on a set of design guidelines and metrics drawing upon a collection of best practices from the cartographic literature, GeoLinter detects potentially suboptimal design decisions and provides further recommendations on design improvement with explanations at each step of the design process. We perform a validation study to evaluate the proposed framework's functionality with respect to identifying and fixing errors and apply its results to improve the robustness of GeoLinter. Finally, we demonstrate the effectiveness of the GeoLinter - validated through empirical studies - by applying it to a series of case studies using real-world datasets.

cs.HC↗

MolSieve: A Progressive Visual Analytics System for Molecular Dynamics Simulations

Molecular Dynamics (MD) simulations are ubiquitous in cutting-edge physio-chemical research. They provide critical insights into how a physical system evolves over time given a model of interatomic interactions. Understanding a system's evolution is key to selecting the best candidates for new drugs, materials for manufacturing, and countless other practical applications. With today's technology, these simulations can encompass millions of unit transitions between discrete molecular structures, spanning up to several milliseconds of real time. Attempting to perform a brute-force analysis with data-sets of this size is not only computationally impractical, but would not shed light on the physically-relevant features of the data. Moreover, there is a need to analyze simulation ensembles in order to compare similar processes in differing environments. These problems call for an approach that is analytically transparent, computationally efficient, and flexible enough to handle the variety found in materials based research. In order to address these problems, we introduce MolSieve, a progressive visual analytics system that enables the comparison of multiple long-duration simulations. Using MolSieve, analysts are able to quickly identify and compare regions of interest within immense simulations through its combination of control charts, data-reduction techniques, and highly informative visual components. A simple programming interface is provided which allows experts to fit MolSieve to their needs. To demonstrate the efficacy of our approach, we present two case studies of MolSieve and report on findings from domain collaborators.

physics.comp-ph↗

GeoExplainer: A Visual Analytics Framework for Spatial Modeling Contextualization and Report Generation

Geographic regression models of various descriptions are often applied to identify patterns and anomalies in the determinants of spatially distributed observations. These types of analyses focus on answering why questions about underlying spatial phenomena, e.g., why is crime higher in this locale, why do children in one school district outperform those in another, etc.? Answers to these questions require explanations of the model structure, the choice of parameters, and contextualization of the findings with respect to their geographic context. This is particularly true for local forms of regression models which are focused on the role of locational context in determining human behavior. In this paper, we present GeoExplainer, a visual analytics framework designed to support analysts in creating explanative documentation that summarizes and contextualizes their spatial analyses. As analysts create their spatial models, our framework flags potential issues with model parameter selections, utilizes template-based text generation to summarize model outputs, and links with external knowledge repositories to provide annotations that help to explain the model results. As analysts explore the model results, all visualizations and annotations can be captured in an interactive report generation widget. We demonstrate our framework using a case study modeling the determinants of voting in the 2016 US Presidential Election.

cs.HC↗

Privacy-Preserving Graph Machine Learning from Data to Computation: A Survey

In graph machine learning, data collection, sharing, and analysis often involve multiple parties, each of which may require varying levels of data security and privacy. To this end, preserving privacy is of great importance in protecting sensitive information. In the era of big data, the relationships among data entities have become unprecedentedly complex, and more applications utilize advanced data structures (i.e., graphs) that can support network structures and relevant attribute information. To date, many graph-based AI models have been proposed (e.g., graph neural networks) for various domain tasks, like computer vision and natural language processing. In this paper, we focus on reviewing privacy-preserving techniques of graph machine learning. We systematically review related works from the data to the computational aspects. We first review methods for generating privacy-preserving graph data. Then we describe methods for transmitting privacy-preserved information (e.g., graph model parameters) to realize the optimization-based computation when data sharing among multiple parties is risky or impossible. In addition to discussing relevant theoretical methodology and software tools, we also discuss current challenges and highlight several possible future research opportunities for privacy-preserving graph machine learning. Finally, we envision a unified and comprehensive secure graph machine learning system.

cs.LG↗

Parallel Computation of Piecewise Linear Morse-Smale Segmentations

This paper presents a well-scaling parallel algorithm for the computation of Morse-Smale (MS) segmentations, including the region separators and region boundaries. The segmentation of the domain into ascending and descending manifolds, solely defined on the vertices, improves the computational time using path compression and fully segments the border region. Region boundaries and region separators are generated using a multi-label marching tetrahedra algorithm. This enables a fast and simple solution to find optimal parameter settings in preliminary exploration steps by generating an MS complex preview. It also poses a rapid option to generate a fast visual representation of the region geometries for immediate utilization. Two experiments demonstrate the performance of our approach with speedups of over an order of magnitude in comparison to two publicly available implementations. The example section shows the similarity to the MS complex, the useability of the approach, and the benefits of this method with respect to the presented datasets. We provide our implementation with the paper.

cs.GR↗

InfoFair: Information-Theoretic Intersectional Fairness

Algorithmic fairness is becoming increasingly important in data mining and machine learning. Among others, a foundational notation is group fairness. The vast majority of the existing works on group fairness, with a few exceptions, primarily focus on debiasing with respect to a single sensitive attribute, despite the fact that the co-existence of multiple sensitive attributes (e.g., gender, race, marital status, etc.) in the real-world is commonplace. As such, methods that can ensure a fair learning outcome with respect to all sensitive attributes of concern simultaneously need to be developed. In this paper, we study the problem of information-theoretic intersectional fairness (InfoFair), where statistical parity, a representative group fairness measure, is guaranteed among demographic groups formed by multiple sensitive attributes of interest. We formulate it as a mutual information minimization problem and propose a generic end-to-end algorithmic framework to solve it. The key idea is to leverage a variational representation of mutual information, which considers the variational distribution between learning outcomes and sensitive attributes, as well as the density ratio between the variational and the original distributions. Our proposed framework is generalizable to many different settings, including other statistical notions of fairness, and could handle any type of learning task equipped with a gradient-based optimizer. Empirical evaluations in the fair classification task on three real-world datasets demonstrate that our proposed framework can effectively debias the classification results with minimal impact to the classification accuracy.

cs.LG↗

Deeper-GXX: Deepening Arbitrary GNNs

Recently, motivated by real applications, a major research direction in graph neural networks (GNNs) is to explore deeper structures. For instance, the graph connectivity is not always consistent with the label distribution (e.g., the closest neighbors of some nodes are not from the same category). In this case, GNNs need to stack more layers, in order to find the same categorical neighbors in a longer path for capturing the class-discriminative information. However, two major problems hinder the deeper GNNs to obtain satisfactory performance, i.e., vanishing gradient and over-smoothing. On one hand, stacking layers makes the neural network hard to train as the gradients of the first few layers vanish. Moreover, when simply addressing vanishing gradient in GNNs, we discover the shading neighbors effect (i.e., stacking layers inappropriately distorts the non-IID information of graphs and degrade the performance of GNNs). On the other hand, deeper GNNs aggregate much more information from common neighbors such that individual node representations share more overlapping features, which makes the final output representations not discriminative (i.e., overly smoothed). In this paper, for the first time, we address both problems to enable deeper GNNs, and propose Deeper-GXX, which consists of the Weight-Decaying Graph Residual Connection module (WDG-ResNet) and Topology-Guided Graph Contrastive Loss (TGCL). Extensive experiments on real-world data sets demonstrate that Deeper-GXX outperforms state-of-the-art deeper baselines.

cs.LG↗

DISCO: Comprehensive and Explainable Disinformation Detection

Disinformation refers to false information deliberately spread to influence the general public, and the negative impact of disinformation on society can be observed in numerous issues, such as political agendas and manipulating financial markets. In this paper, we identify prevalent challenges and advances related to automated disinformation detection from multiple aspects and propose a comprehensive and explainable disinformation detection framework called DISCO. It leverages the heterogeneity of disinformation and addresses the opaqueness of prediction. Then we provide a demonstration of DISCO on a real-world fake news detection task with satisfactory detection accuracy and explanation. The demo video and source code of DISCO is now publicly available https://github.com/DongqiFu/DISCO. We expect that our demo could pave the way for addressing the limitations of identification, comprehension, and explainability as a whole.

cs.LG↗

Privacy-preserving Graph Analytics: Secure Generation and Federated Learning

Directly motivated by security-related applications from the Homeland Security Enterprise, we focus on the privacy-preserving analysis of graph data, which provides the crucial capacity to represent rich attributes and relationships. In particular, we discuss two directions, namely privacy-preserving graph generation and federated graph learning, which can jointly enable the collaboration among multiple parties each possessing private graph data. For each direction, we identify both "quick wins" and "hard problems". Towards the end, we demonstrate a user interface that can facilitate model explanation, interpretation, and visualization. We believe that the techniques developed in these directions will significantly enhance the capabilities of the Homeland Security Enterprise to tackle and mitigate the various security risks.

cs.CR↗

Towards Conditional Generation of Minimal Action Potential Pathways for Molecular Dynamics

In this paper, we utilized generative models, and reformulate it for problems in molecular dynamics (MD) simulation, by introducing an MD potential energy component to our generative model. By incorporating potential energy as calculated from TorchMD into a conditional generative framework, we attempt to construct a low-potential energy route of transformation between the helix~$\rightarrow$~coil structures of a protein. We show how to add an additional loss function to conditional generative models, motivated by potential energy of molecular configurations, and also present an optimization technique for such an augmented loss function. Our results show the benefit of this additional loss term on synthesizing realistic molecular trajectories.

q-bio.BM↗

Cinema Darkroom: A Deferred Rendering Framework for Large-Scale Datasets

This paper presents a framework that fully leverages the advantages of a deferred rendering approach for the interactive visualization of large-scale datasets. Geometry buffers (G-Buffers) are generated and stored in situ, and shading is performed post hoc in an interactive image-based rendering front end. This decoupled framework has two major advantages. First, the G-Buffers only need to be computed and stored once---which corresponds to the most expensive part of the rendering pipeline. Second, the stored G-Buffers can later be consumed in an image-based rendering front end that enables users to interactively adjust various visualization parameters---such as the applied color map or the strength of ambient occlusion---where suitable choices are often not known a priori. This paper demonstrates the use of Cinema Darkroom on several real-world datasets, highlighting CD's ability to effectively decouple the complexity and size of the dataset from its visualization.

cs.GR↗

A Visual Analytics Framework for Explaining and Diagnosing Transfer Learning Processes

Many statistical learning models hold an assumption that the training data and the future unlabeled data are drawn from the same distribution. However, this assumption is difficult to fulfill in real-world scenarios and creates barriers in reusing existing labels from similar application domains. Transfer Learning is intended to relax this assumption by modeling relationships between domains, and is often applied in deep learning applications to reduce the demand for labeled data and training time. Despite recent advances in exploring deep learning models with visual analytics tools, little work has explored the issue of explaining and diagnosing the knowledge transfer process between deep learning models. In this paper, we present a visual analytics framework for the multi-level exploration of the transfer learning processes when training deep neural networks. Our framework establishes a multi-aspect design to explain how the learned knowledge from the existing model is transferred into the new learning task when training deep neural networks. Based on a comprehensive requirement and task analysis, we employ descriptive visualization with performance measures and detailed inspections of model behaviors from the statistical, instance, feature, and model structure levels. We demonstrate our framework through two case studies on image classification by fine-tuning AlexNets to illustrate how analysts can utilize our framework.

cs.HC↗

Auditing the Sensitivity of Graph-based Ranking with Visual Analytics

Graph mining plays a pivotal role across a number of disciplines, and a variety of algorithms have been developed to answer who/what type questions. For example, what items shall we recommend to a given user on an e-commerce platform? The answers to such questions are typically returned in the form of a ranked list, and graph-based ranking methods are widely used in industrial information retrieval settings. However, these ranking algorithms have a variety of sensitivities, and even small changes in rank can lead to vast reductions in product sales and page hits. As such, there is a need for tools and methods that can help model developers and analysts explore the sensitivities of graph ranking algorithms with respect to perturbations within the graph structure. In this paper, we present a visual analytics framework for explaining and exploring the sensitivity of any graph-based ranking algorithm by performing perturbation-based what-if analysis. We demonstrate our framework through three case studies inspecting the sensitivity of two classic graph-based ranking algorithms (PageRank and HITS) as applied to rankings in political news media and social networks.

cs.SI↗

Diagnosing Concept Drift with Visual Analytics

Concept drift is a phenomenon in which the distribution of a data stream changes over time in unforeseen ways, causing prediction models built on historical data to become inaccurate. While a variety of automated methods have been developed to identify when concept drift occurs, there is limited support for analysts who need to understand and correct their models when drift is detected. In this paper, we present a visual analytics method, DriftVis, to support model builders and analysts in the identification and correction of concept drift in streaming data. DriftVis combines a distribution-based drift detection method with a streaming scatterplot to support the analysis of drift caused by the distribution changes of data streams and to explore the impact of these changes on the model's accuracy. A quantitative experiment and two case studies on weather prediction and text classification have been conducted to demonstrate our proposed tool and illustrate how visual analytics can be used to support the detection, examination, and correction of concept drift.

cs.LG↗

Localized Topological Simplification of Scalar Data

This paper describes a localized algorithm for the topological simplification of scalar data, an essential pre-processing step of topological data analysis (TDA). Given a scalar field f and a selection of extrema to preserve, the proposed localized topological simplification (LTS) derives a function g that is close to f and only exhibits the selected set of extrema. Specifically, sub- and superlevel set components associated with undesired extrema are first locally flattened and then correctly embedded into the global scalar field, such that these regions are guaranteed -- from a combinatorial perspective -- to no longer contain any undesired extrema. In contrast to previous global approaches, LTS only and independently processes regions of the domain that actually need to be simplified, which already results in a noticeable speedup. Moreover, due to the localized nature of the algorithm, LTS can utilize shared-memory parallelism to simplify regions simultaneously with a high parallel efficiency (70%). Hence, LTS significantly improves interactivity for the exploration of simplification parameters and their effect on subsequent topological analysis. For such exploration tasks, LTS brings the overall execution time of a plethora of TDA pipelines from minutes down to seconds, with an average observed speedup over state-of-the-art techniques of up to x36. Furthermore, in the special case where preserved extrema are selected based on topological persistence, an adapted version of LTS partially computes the persistence diagram and simultaneously simplifies features below a predefined persistence threshold. The effectiveness of LTS, its parallel efficiency, and its resulting benefits for TDA are demonstrated on several simulated and acquired datasets from different application domains, including physics, chemistry, and biomedical imaging.

cs.DS↗

Same Stats, Different Graphs: Exploring the Space of Graphs in Terms of Graph Properties

Data analysts commonly utilize statistics to summarize large datasets. While it is often sufficient to explore only the summary statistics of a dataset (e.g., min/mean/max), Anscombe's Quartet demonstrates how such statistics can be misleading. We consider a similar problem in the context of graph mining. To study the relationships between different graph properties, we examine low-order non-isomorphic graphs and provide a simple visual analytics system to explore correlations across multiple graph properties. However, for larger graphs, studying the entire space quickly becomes intractable. We use different random graph generation methods to further look into the distribution of graph properties for higher order graphs and investigate the impact of various sampling methodologies. We also describe a method for generating many graphs that are identical over a number of graph properties and statistics yet are clearly different and identifiably distinct.

cs.CG↗

Same Stats, Different Graphs (Graph Statistics and Why We Need Graph Drawings)

Data analysts commonly utilize statistics to summarize large datasets. While it is often sufficient to explore only the summary statistics of a dataset (e.g., min/mean/max), Anscombe's Quartet demonstrates how such statistics can be misleading. Graph mining has a similar problem in that graph statistics (e.g., density, connectivity, clustering coefficient) may not capture all of the critical properties of a given graph. To study the relationships between different graph properties and statistics, we examine all low-order (<= 10) non-isomorphic graphs and provide a simple visual analytics system to explore correlations across multiple graph properties. However, for graphs with more than ten nodes, generating the entire space of graphs becomes quickly intractable. We use different random graph generation methods to further look into the distribution of graph statistics for higher order graphs and investigate the impact of various sampling methodologies. We also describe a method for generating many graphs that are identical over a number of graph properties and statistics yet are clearly different and identifiably distinct.

cs.CG↗