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Roumen Anguelov

Publications and source records attributed to Roumen Anguelov.

18 recordsLinked to original sources

Ghost Dynamics in Receptor Signalling Networks: A Fast--Slow Adaptive Extension of Competitive Cancer Inhibition Models

Receptor occupancy models quantify inhibition of cancer signalling, often treating target occupancy as a proxy for downstream activity. Although this simplification yields low-dimensional models, it cannot represent delayed pathway shutdown, transient resistance, or non-monotone viability responses generated by intracellular networks. We formulate a fast--slow framework that distinguishes drug--target occupancy from downstream signalling activity. The fast variable $X$ represents occupancy, the activity variable $A$ represents pro-survival signalling, and the slow variable $B$ represents adaptive feedback including phosphatase induction, stress adaptation, or signalling rewiring. Rapid occupancy relaxation permits a quasi-steady reduction, while weak feedback guarantees global convergence to a unique equilibrium. Stronger feedback may bring the frozen activity subsystem near a saddle-node fold, producing a ghost regime in which trajectories linger near the remnant of a vanished high-activity equilibrium. We determine when slow adaptive passage preserves the inverse-square-root ghost law or, under transverse crossing, produces the dynamic delay scale $O(\varepsilon^{-1/3})$. Coupling activity to viability translates these delays into shoulders in dose--response curves, while adaptive lag may generate early-time overshoot without ad hoc forcing. A proof-of-concept fit to time-resolved viability data reproduces patterns across measured concentrations and observation times and reveals practical identifiability limitations. The framework also predicts exposure-time-dependent shifts in apparent potency, including $IC_{50}(t)$, because viability integrates signalling activity over time rather than receptor occupancy alone.

math.DS

Quantifying antiproliferative effects of quinolinic acid on melanoma, macrophage and keratinocyte cells using a parametric cell-viability model

This paper presents a robust mathematical framework for quantifying antiproliferative effects from noisy in vitro cell viability experiments. The methodology is demonstrated using crystal violet assay measurements of quinolinic acid-induced growth inhibition in B16-F10 murine melanoma, RAW264.7 macrophage, and HaCaT keratinocyte cells through parametric cell viability models. Experimental data exhibited substantial variability and violated the independence assumptions underlying classical inferential statistics. To address these challenges, the proposed framework combines minimal statistical analysis, comprising model-free confidence intervals and pooled within-replicate variability, with deterministic approximation based on least-squares fitting to experimental means and leave-one-replicate-out cross-validation. While all three cell types were described by a common mechanistic framework, each required a distinct parameterisation to capture its characteristic response to quinolinic acid. The resulting one- and two-parameter models accurately described dose- and time-dependent inhibition, with predictive errors close to the intrinsic experimental variability. The models also yielded explicit expressions for time-dependent IC50 values, enabling reliable prediction of inhibitor concentrations required to achieve specified levels of growth inhibition. The proposed framework provides a practical and robust approach for analysing noisy preclinical cell viability data and can be readily extended to other antiproliferative agents and experimental systems.

q-bio.QM

A Mathematical Model of the Cell Cycle: Exploring the Impact of Zingerone on Cancer Cell Proliferation

This paper presents a mathematical model that explores the interactions between Cyclin-Dependent Kinase 1 (CDK1) and the Anaphase-Promoting Complex (APC) in cancer cells. Through the analysis of a dynamical system simulating the CDK1-APC network, we investigate the system's behavior and its implications for cancer progression and potential therapeutic interventions. Our findings highlight the critical role of CDK1-APC interactions in regulating the cell cycle and examine the impact of Zingerone, a compound derived from ginger, on modulating the period of the oscillatory dynamics. These results provide new insights into the potential of Zingerone to influence cell proliferation and offer avenues for less harmful cancer treatments. The quantitative analysis is conducted by first theoretically deriving the cell viability as a function of time and Zingerone concentration, and then validating this function by using experimental data.

q-bio.MN

Stationary states of aggregation-diffusion equations with compactly supported attraction kernels: radial symmetry and mass-independent boundedness

We consider a nonlocal aggregation diffusion equation incorporating repulsion modelled by nonlinear diffusion and attraction modelled by nonlocal interaction. When the attractive interaction kernel is radially symmetric and strictly increasing on its domain it is previously known that all stationary solutions are radially symmetric and decreasing up to a translation; however, this result has not been extended to accommodate attractive kernels that are non-decreasing, for instance, attractive kernels with bounded support. For the diffusion coefficient $m>1$, we show that, for attractive kernels that are radially symmetric and non-decreasing, all stationary states are radially symmetric and decreasing up to a translation on each connected subset of their support. Furthermore, for $m>2$, we prove analytically that stationary states have an upper-bound independent of the initial data, confirming previous numerical results given in the literature.

math.AP

Second-order nonstandard finite difference schemes for a class of models in bioscience

We consider a dynamical system, defined by a system of autonomous differential equations, on $Ω\subset\mathbb{R}^n$. By using Mickens' rule on the nonlocal approximation of nonlinear terms, we construct an implicit Nonstandard Finite Difference (NSFD) scheme that, under an existence and uniqueness condition, is an explicit time reversible scheme. Apart from being elementary stable, we show that the NSFD scheme is of second-order and domain-preserving, thereby solving a pending problem on the construction of higher-order nonstandard schemes without spurious solutions, and extending the tangent condition to discrete dynamical systems. It is shown that the new scheme applies directly for mass action-based models of biological and chemical processes.

math.NA

Quantifying assays: A Modeling tale of variability in cancer therapeutics assessed on cancer cells

Inhibiting a signalling pathway concerns controlling the cellular processes of a cancer cell's viability, cell division, and death. Assay protocols created to see if the molecular structures of the drugs being tested have the desired inhibition qualities often show great variability across experiments, and it is imperative to diminish the effects of such variability while inferences are drawn. In this paper we propose the study of experimental data through the lenses of a mathematical model depicting the inhibition mechanism and the activation-inhibition dynamics. The method is exemplified through assay data obtained from the study of inhibition of the CXCL12/CXCR4 activation axis for the melanoma cells. To mitigate the effects of the variability of the data on the cell viability measurement, the cell viability is theoretically constructed as a function of time depending on several parameters. The values of these parameters are estimated by using the experimental data. Deriving approximation for the cell viability in a theoretically pre-determined form has the advantages of (i) being less sensitive to data variability (ii) the estimated values of the parameters are interpreted directly in the biological processes, (iii) the amount of variability explained via the approximation validates the quality of the model, (iv) with the data integrated into the model one can derive a more complete view over the whole process. These advantages are demonstrated in the step-by-step implementation of the outlined approach.

q-bio.QM

On the use of Traveling Waves for Pest/Vector elimination using the Sterile Insect Technique

The development of sustainable vector/pest control methods is of utmost importance to reduce the risk of vector-borne diseases and pest damages on crops. Among them, the Sterile Insect Technique (SIT) is a very promising one. In this paper, using diffusion operators, we extend a temporal SIT model, developed in a recent paper, into a partially degenerate reaction-diffusion SIT model. Adapting some theoretical results on traveling wave solutions for partially degenerate reaction-diffusion equations, we show the existence of mono-stable and bi-stable traveling-wave solutions for our SIT system. The dynamics of our system is driven by a SIT-threshold number above which the SIT control becomes effective and drives the system to elimination, using massive releases. When the amount of sterile males is lower than the SIT-threshold, the SIT model experiences a strong Allee effect such that a bi-stable traveling wave solution can exist and can also be used to derive an effective long term strategy, mixing massive and small releases. We illustrate some of our theoretical results with numerical simulations , and, also explore numerically spatial-localized SIT control strategies, using massive and small releases. We show that this "corridor" strategy can be efficient to block an invasion and eventually can be used to push back the front of a vector/pest invasion.

math.AP

Mathematical model for pest-insect control using mating disruption and trapping

Controlling pest insects is a challenge of main importance to preserve crop production. In the context of Integrated Pest Management (IPM) programs, we develop a generic model to study the impact of mating disruption control using an artificial female pheromone to confuse males and adversely affect their mating opportunities. Consequently the reproduction rate is diminished leading to a decline in the population size. For more efficient control, trapping is used to capture the males attracted to the artificial pheromone. The model, derived from biological and ecological assumptions, is governed by a system of ODEs. A theoretical analysis of the model without control is first carried out to establish the properties of the endemic equilibrium. Then, control is added and the theoretical analysis of the model enables to identify threshold values of pheromone which are practically interesting for field applications. In particular, we show that there is a threshold above which the global asymptotic stability of the trivial equilibrium is ensured, i.e. the population goes to extinction. Finally we illustrate the theoretical results via numerical experiments.

math.DS

Properties of the Discrete Pulse Transform for Multi-Dimensional Arrays

This report presents properties of the Discrete Pulse Transform on multi-dimensional arrays introduced by the authors two or so years ago. The main result given here in Lemma 2.1 is also formulated in a paper to appear in IEEE Transactions on Image Processing. However, the proof, being too technical, was omitted there and hence it appears in full in this publication.

cs.CV

A Class of LULU Operators on Multi-Dimensional Arrays

The LULU operators for sequences are extended to multi-dimensional arrays via the morphological concept of connection in a way which preserves their essential properties, e.g. they are separators and form a four element fully ordered semi-group. The power of the operators is demonstrated by deriving a total variation preserving discrete pulse decomposition of images.

cs.CV

Rational Extensions of C(X) via Hausdorff Continuous Functions

The ring operations and the metric on $C(X)$ are extended to the set $\mathbb{H}_{nf}(X)$ of all nearly finite Hausdorff continuous interval valued functions and it is shown that $\mathbb{H}_{nf}(X)$ is both rationally and topologically complete. Hence, the rings of quotients of $C(X)$ as well as their metric completions are represented as rings of Hausdorff continuous functions.

math.RA

Hausdorff Continuous Viscosity Solutions of Hamilton-Jacobi Equations

A new concept of viscosity solutions, namely, the Hausdorff continuous viscosity solution for the Hamilton-Jacobi equation is defined and investigated. It is shown that the main ideas within the classical theory of continuous viscosity solutions can be extended to the wider space of Hausdorff continuous functions while also generalizing some of the existing concepts of discontinuous solutions.

math.AP

LULU operators and locally monotone approximations

The LULU operators, well known in the nonlinear multiresolution analysis of sequences, are extended to functions defined on continuous domain, namely, a real interval $Ω\subseteq\mathbb{R}$. Similar to their discrete counterparts, for a given $δ>0$ the operators $L_δ$ and $U_δ$ form a fully ordered semi-group of four elements. It is shown that the compositions $L_δ\circ U_δ$ and $U_δ\circ L_δ$ provide locally $δ$-monotone approximations for the bounded real functions defined on $Ω$. The error of approximation is estimated in terms of the modulus of nonmonotonicity.

math.CA

Algebraic operations on the space of Hausdorff continuous interval functions

We show that the operations addition and multiplication on the set $C(Ω)$ of all real continuous functions on $Ω\subseteq\mathbb{R}^n$ can be extended to the set $\mathbb{H}(Ω)$ of all Hausdorff continuous interval functions on $Ω$ in such a way that the algebraic structure of $C(Ω)$ is preserved, namely, $\mathbb{H}(Ω)$ is a commutative ring with identity. The operations on $\mathbb{H}(Ω)$ are defined in three different but equivalent ways. This allow us to look at these operations from different points of view as well as to show that they are naturally associated with the Hausdorff continuous functions.

math.GM

Solving large classes of nonlinear systems of PDEs

It is shown that large classes of nonlinear systems of PDEs, with possibly associated initial and/or boundary value problems, can be solved by the method of order completion. The solutions obtained can be assimilated with Hausdorff continuous functions. The usual Navier-Stokes equations, as well as their various modifications aiming at a realistic modelling are included as particular cases. The same holds for the critically important constitutive relations in various branches of Continuum Mechanics. The solution method does not involve functional analysis, nor various Sobolev or other spaces of distributions or generalized functions. The general and type independent existence and regularity results regarding solutions presented here are a first in the literature.

math.AP

An Introduction to Some Spaces of Interval Functions

The paper gives a brief account of the spaces of interval functions defined through the concepts of H-continuity, D-continuity and S-continuity. All three continuity concepts generalize the usual concept of continuity for real (point valued) functions. The properties of the functions in these new spaces are discussed and investigated, preserving essential properties of the usual continuous real functions being of primary interest. Various ways in which the spaces of H-continuous, D-continuous and S-continuous interval functions complement the spaces of continuous real functions are discussed.

math.GM

Dedekind order completion of C(X) by Hausdorff continuous functions

The concept of Hausdorff continuous interval valued functions, developed within the theory of Hausdorff approximations and originaly defined for interval valued functions of one real variable is extended to interval valued functions defined on a topological space X. The main result is that the set of all finite Hausdorff continuous functions on any topological space X is Dedekind order complete. Hence it contains the Dedekind order completion of the set C(X) of all continuous real functions defined on X as well as the Dedekind order completion of the set C_b(X) of all bounded continuous functions on X. Under some general assumptions about the topological space X the Dedekind order completions of both C(X) and C_b(X) are characterised as subsets of the set of all Hausdorff continuous functions. This solves a long outstanding open problem about the Dedekind order completion of C(X). In addition, it has major applications to the regularity of solutions of large classes of nonlinear PDEs.

math.AP

Hausdorff continuous solutions of nonlinear PDEs through the order completion method

It was shown in 1994, in Oberguggenberger & Rosinger, that very large classes of nonlinear PDEs have solutions which can be assimilated with usual measurable functions on the Euclidean domains of definition of the respective equations. In this paper the regularity of these solutions is significantly improved by showing that they can in fact be assimilated with Hausdorff continuous functions. The method of solution of PDEs is based on the Dedekind order completion of spaces of smooth functions which are defined on the domains of the given equations.

math.AP