arXiv subjects

Rueih-Sheng Fu

Publications and source records attributed to Rueih-Sheng Fu.

3 recordsLinked to original sources

arXiv2023

Limits on the Precision of Catenane Molecular Motors: Insights from Thermodynamics and Molecular Dynamics Simulations

Thermodynamic uncertainty relations (TURs) relate precision to the dissipation rate, yet the inequalities can be far from saturation. Indeed, in catenane molecular motor simulations, we record precision far below the TUR limit. We further show that this inefficiency can be anticipated by four physical parameters: the thermodynamic driving force, fuel decomposition rate, coupling between fuel decomposition and motor motion, and rate of undriven motor motion. The physical insights might assist in designing molecular motors in the future.

cond-mat.stat-mech↗

arXiv2022

Thermodynamic uncertainty relation for Langevin dynamics by scaling time

The thermodynamic uncertainty relation (TUR) quantifies a relationship between current fluctuations and dissipation in out-of-equilibrium overdamped Langevin dynamics, making it a natural counterpart of the fluctuation-dissipation theorem in equilibrium statistical mechanics. For underdamped Langevin dynamics, the situation is known to be more complicated, with dynamical activity also playing a role in limiting the magnitude of current fluctuations. Progress on those underdamped TUR-like bounds has largely come from applications of the information-theoretic Cramér-Rao inequality. Here, we present an alternative perspective by employing large deviation theory. The approach offers a general, unified treatment of TUR-like bounds for both overdamped and underdamped Langevin dynamics built upon current fluctuations achieved by scaling time. The bounds we derive following this approach are similar to known results but with differences we discuss and rationalize.

cond-mat.stat-mech↗

arXiv2020

Current inversion in a periodically driven two-dimensional Brownian ratchet

It is well-known that Brownian ratchets can exhibit current reversals, wherein the sign of the current switches as a function of the driving frequency. We introduce a spatial discretization of such a two-dimensional Brownian ratchet to enable spectral methods that efficiently compute those currents. These discrete-space models provide a convenient way to study the Markovian dynamics conditioned upon generating particular values of the currents. By studying such conditioned processes, we demonstrate that low-frequency negative values of current arise from typical events and high-frequency positive values of current arises from rare events. We demonstrate how these observations can inform the sculpting of time-dependent potential landscapes with a specific frequency response.

cond-mat.stat-mech↗