arXiv subjects

Rui Ye

Publications and source records attributed to Rui Ye.

At least 37 records · Page 2Linked to original sources

arXiv2025

CT Radiomics-Based Explainable Machine Learning Model for Accurate Differentiation of Malignant and Benign Endometrial Tumors: A Two-Center Study

Aimed to develop and validate a CT radiomics-based explainable machine learning model for precise diagnosing malignancy and benignity specifically in endometrial cancer (EC) patients. A total of 83 EC patients from two centers, including 46 with malignant and 37 with benign conditions, were included, with data split into a training set (n=59) and a testing set (n=24). The regions of interest (ROIs) were manually segmented from pre-surgical CT scans, and 1132 radiomic features were extracted from the pre-surgical CT scans using Pyradiomics. Six explainable machine learning (ML) modeling algorithms were implemented respectively, for determining the optimal radiomics pipeline. The diagnostic performance of the radiomic model was evaluated by using sensitivity, specificity, accuracy, precision, F1 score, AUROC, and AUPRC. To enhance clinical understanding and usability, we separately implemented SHAP analysis and feature mapping visualization, and evaluated the calibration curve and decision curve. By comparing six modeling strategies, the Random Forest model emerged as the optimal choice for diagnosing EC, with a training AUROC of 1.00 and a testing AUROC of 0.96. SHAP identified the most important radiomic features, revealing that all selected features were significantly associated with EC (P < 0.05). Radiomics feature maps also provide a feasible assessment tool for clinical applications. Decision Curve Analysis (DCA) indicated a higher net benefit for our model compared to the "All" and "None" strategies, suggesting its clinical utility in identifying high-risk cases and reducing unnecessary interventions. In conclusion, the CT radiomics-based explainable ML model achieved high diagnostic performance, which could be used as an intelligent auxiliary tool for the diagnosis of endometrial cancer.

eess.IV↗

arXiv2025

BrowseConf: Confidence-Guided Test-Time Scaling for Web Agents

Confidence in LLMs is a useful indicator of model uncertainty and answer reliability. Existing work mainly focused on single-turn scenarios, while research on confidence in complex multi-turn interactions is limited. In this paper, we investigate whether LLM-based search agents have the ability to communicate their own confidence through verbalized confidence scores after long sequences of actions, a significantly more challenging task compared to outputting confidence in a single interaction. Experimenting on open-source agentic models, we first find that models exhibit much higher task accuracy at high confidence while having near-zero accuracy when confidence is low. Based on this observation, we propose Test-Time Scaling (TTS) methods that use confidence scores to determine answer quality, encourage the model to try again until reaching a satisfactory confidence level. Results show that our proposed methods significantly reduce token consumption while demonstrating competitive performance compared to baseline fixed budget TTS methods.

cs.CL↗

arXiv2025

WebLeaper: Empowering Efficiency and Efficacy in WebAgent via Enabling Info-Rich Seeking

Large Language Model (LLM)-based agents have emerged as a transformative approach for open-ended problem solving, with information seeking (IS) being a core capability that enables autonomous reasoning and decision-making. While prior research has largely focused on improving retrieval depth, we observe that current IS agents often suffer from low search efficiency, which in turn constrains overall performance. A key factor underlying this inefficiency is the sparsity of target entities in training tasks, which limits opportunities for agents to learn and generalize efficient search behaviors. To address these challenges, we propose WebLeaper, a framework for constructing high-coverage IS tasks and generating efficient solution trajectories. We formulate IS as a tree-structured reasoning problem, enabling a substantially larger set of target entities to be embedded within a constrained context. Leveraging curated Wikipedia tables, we propose three variants for synthesizing IS tasks, Basic, Union, and Reverse-Union, to systematically increase both IS efficiency and efficacy. Finally, we curate training trajectories by retaining only those that are simultaneously accurate and efficient, ensuring that the model is optimized for both correctness and search performance. Extensive experiments on both basic and comprehensive settings, conducted on five IS benchmarks, BrowserComp, GAIA, xbench-DeepSearch, WideSearch, and Seal-0, demonstrate that our method consistently achieves improvements in both effectiveness and efficiency over strong baselines.

cs.CL↗

arXiv2025

AgentFold: Long-Horizon Web Agents with Proactive Context Management

LLM-based web agents show immense promise for information seeking, yet their effectiveness on long-horizon tasks is hindered by a fundamental trade-off in context management. Prevailing ReAct-based agents suffer from context saturation as they accumulate noisy, raw histories, while methods that fixedly summarize the full history at each step risk the irreversible loss of critical details. Addressing these, we introduce AgentFold, a novel agent paradigm centered on proactive context management, inspired by the human cognitive process of retrospective consolidation. AgentFold treats its context as a dynamic cognitive workspace to be actively sculpted, rather than a passive log to be filled. At each step, it learns to execute a `folding' operation, which manages its historical trajectory at multiple scales: it can perform granular condensations to preserve vital, fine-grained details, or deep consolidations to abstract away entire multi-step sub-tasks. The results on prominent benchmarks are striking: with simple supervised fine-tuning (without continual pre-training or RL), our AgentFold-30B-A3B agent achieves 36.2% on BrowseComp and 47.3% on BrowseComp-ZH. Notably, this performance not only surpasses or matches open-source models of a dramatically larger scale, such as the DeepSeek-V3.1-671B-A37B, but also surpasses leading proprietary agents like OpenAI's o4-mini.

cs.CL↗

arXiv2025

WebSailor-V2: Bridging the Chasm to Proprietary Agents via Synthetic Data and Scalable Reinforcement Learning

Transcending human cognitive limitations represents a critical frontier in LLM training. Proprietary agentic systems like DeepResearch have demonstrated superhuman capabilities on extremely complex information-seeking benchmarks such as BrowseComp, a feat previously unattainable. We posit that their success hinges on a sophisticated reasoning pattern absent in open-source models: the ability to systematically reduce extreme uncertainty when navigating vast information landscapes. Based on this insight, we introduce WebSailor, a complete post-training methodology designed to instill this crucial capability. Our approach involves generating novel, high-uncertainty tasks through structured sampling and information obfuscation, RFT cold start, and an efficient agentic RL training algorithm, Duplicating Sampling Policy Optimization (DUPO). With this integrated pipeline, WebSailor significantly outperforms all open-source agents in complex information-seeking tasks, matching proprietary agents' performance and closing the capability gap.

cs.LG↗

arXiv2025

BrowseMaster: Towards Scalable Web Browsing via Tool-Augmented Programmatic Agent Pair

Effective information seeking in the vast and ever-growing digital landscape requires balancing expansive search with strategic reasoning. Current large language model (LLM)-based agents struggle to achieve this balance due to limitations in search breadth and reasoning depth, where slow, serial querying restricts coverage of relevant sources and noisy raw inputs disrupt the continuity of multi-step reasoning. To address these challenges, we propose BrowseMaster, a scalable framework built around a programmatically augmented planner-executor agent pair. The planner formulates and adapts search strategies based on task constraints, while the executor conducts efficient, targeted retrieval to supply the planner with concise, relevant evidence. This division of labor preserves coherent, long-horizon reasoning while sustaining broad and systematic exploration, overcoming the trade-off that limits existing agents. Extensive experiments on challenging English and Chinese benchmarks show that BrowseMaster consistently outperforms open-source and proprietary baselines, achieving scores of 30.0 on BrowseComp-en and 46.5 on BrowseComp-zh, which demonstrates its strong capability in complex, reasoning-heavy information-seeking tasks at scale.

cs.AI↗

arXiv2025

SciMaster: Towards General-Purpose Scientific AI Agents, Part I. X-Master as Foundation: Can We Lead on Humanity's Last Exam?

The rapid advancements of AI agents have ignited the long-held ambition of leveraging them to accelerate scientific discovery. Achieving this goal requires a deep understanding of the frontiers of human knowledge. As such, Humanity's Last Exam (HLE) provides an exceptionally challenging touchstone for evaluating scientific AI agents. In this work, we aim to construct the foundational architecture for general-purpose agents and validate the capabilities through leading performance on HLE. To achieve this, we introduce X-Master, a tool-augmented reasoning agent designed to emulate human researchers by interacting flexibly with external tools during its reasoning process. This agent, guided by the conceptualization of code as an interaction language, can flexibly leverage built-in Python libraries and our customized tools to augment the reasoning. We further scale its capabilities through X-Masters, a scattered-and-stacked agentic workflow that systematically enhances breadth and depth of reasoning. Our open-source solution, X-Masters, sets a new state-of-the-art record on HLE with a score of 32.1%, surpassing OpenAI's and Google's Deep Research (26.6% and 26.9%) and becoming the first to exceed the 30% threshold. This work allows us to gain a deeper understanding of complex task-solving and accumulates valuable experience that can inform future advancements, guiding subsequent model training.

cs.AI↗

arXiv2025

X-MAS: Towards Building Multi-Agent Systems with Heterogeneous LLMs

LLM-based multi-agent systems (MAS) extend the capabilities of single LLMs by enabling cooperation among multiple specialized agents. However, most existing MAS frameworks rely on a single LLM to drive all agents, constraining the system's intelligence to the limit of that model. This paper explores the paradigm of heterogeneous LLM-driven MAS (X-MAS), where agents are powered by diverse LLMs, elevating the system's potential to the collective intelligence of diverse LLMs. We introduce X-MAS-Bench, a comprehensive testbed designed to evaluate the performance of various LLMs across different domains and MAS-related functions. As an extensive empirical study, we assess 27 LLMs across 5 domains (encompassing 21 test sets) and 5 functions, conducting over 1.7 million evaluations to identify optimal model selections for each domain-function combination. Building on these findings, we demonstrate that transitioning from homogeneous to heterogeneous LLM-driven MAS can significantly enhance system performance without requiring structural redesign. Specifically, in a chatbot-only MAS scenario, the heterogeneous configuration yields up to 8.4\% performance improvement on the MATH dataset. In a mixed chatbot-reasoner scenario, the heterogeneous MAS could achieve a remarkable 47\% performance boost on the AIME dataset. Our results underscore the transformative potential of heterogeneous LLMs in MAS, highlighting a promising avenue for advancing scalable, collaborative AI systems.

cs.AI↗

arXiv2025

MobileA3gent: Training Mobile GUI Agents Using Decentralized Self-Sourced Data from Diverse Users

The advancement of mobile GUI agents has opened new opportunities for automating tasks on mobile devices. Training these agents requires large-scale high-quality data, which is prohibitively expensive when relying on human labor. Given the vast population of global mobile phone users, if automated data collection from them becomes feasible, the resulting data volume and the subsequently trained mobile agents could reach unprecedented levels. Nevertheless, two major challenges arise: (1) extracting user instructions without human intervention and (2) utilizing distributed user data while preserving privacy. To tackle these challenges, we propose MobileA3gent, a collaborative framework that trains mobile GUI Agents using decentralized self-sourced data from diverse users. The framework comprises two components, each targeting a specific challenge: (1) Auto-Annotation, which enables the automatic collection of high-quality datasets during users' routine phone usage with minimal cost. (2) FedVLM-A, which enhances federated VLM training under non-IID distributions by incorporating adapted global aggregation based on both episode-level and step-level variability. Extensive experiments prove that MobileA3gent achieves superior performance over traditional approaches at only 1% of the cost, highlighting its potential for real-world applications

cs.AI↗

arXiv2025

Structure-Aware Corpus Construction and User-Perception-Aligned Metrics for Large-Language-Model Code Completion

Code completion technology based on large language model has significantly improved the development efficiency of programmers. However, in practical applications, there remains a gap between current commonly used code completion evaluation metrics and users' actual perception. To address this issue, we propose two evaluation metrics for code completion tasks--LCP and ROUGE-LCP, from the perspective of probabilistic modeling. Furthermore, to tackle the lack of effective structural semantic modeling and cross-module dependency information in LLMs for repository-level code completion scenarios, we propose a data processing method based on a Structure-Preserving and Semantically-Reordered Code Graph (SPSR-Graph). Through theoretical analysis and experimental validation, we demonstrate the superiority of the proposed evaluation metrics in terms of user perception consistency, as well as the effectiveness of the data processing method in enhancing model performance.

cs.SE↗

arXiv2025

Incentivizing Inclusive Contributions in Model Sharing Markets

While data plays a crucial role in training contemporary AI models, it is acknowledged that valuable public data will be exhausted in a few years, directing the world's attention towards the massive decentralized private data. However, the privacy-sensitive nature of raw data and lack of incentive mechanism prevent these valuable data from being fully exploited. Addressing these challenges, this paper proposes inclusive and incentivized personalized federated learning (iPFL), which incentivizes data holders with diverse purposes to collaboratively train personalized models without revealing raw data. iPFL constructs a model-sharing market by solving a graph-based training optimization and incorporates an incentive mechanism based on game theory principles. Theoretical analysis shows that iPFL adheres to two key incentive properties: individual rationality and truthfulness. Empirical studies on eleven AI tasks (e.g., large language models' instruction-following tasks) demonstrate that iPFL consistently achieves the highest economic utility, and better or comparable model performance compared to baseline methods. We anticipate that our iPFL can serve as a valuable technique for boosting future AI models on decentralized private data while making everyone satisfied.

cs.AI↗

arXiv2025

FedMABench: Benchmarking Mobile Agents on Decentralized Heterogeneous User Data

Mobile agents have attracted tremendous research participation recently. Traditional approaches to mobile agent training rely on centralized data collection, leading to high cost and limited scalability. Distributed training utilizing federated learning offers an alternative by harnessing real-world user data, providing scalability and reducing costs. However, pivotal challenges, including the absence of standardized benchmarks, hinder progress in this field. To tackle the challenges, we introduce FedMABench, the first benchmark for federated training and evaluation of mobile agents, specifically designed for heterogeneous scenarios. FedMABench features 6 datasets with 30+ subsets, 8 federated algorithms, 10+ base models, and over 800 apps across 5 categories, providing a comprehensive framework for evaluating mobile agents across diverse environments. Through extensive experiments, we uncover several key insights: federated algorithms consistently outperform local training; the distribution of specific apps plays a crucial role in heterogeneity; and, even apps from distinct categories can exhibit correlations during training. FedMABench is publicly available at: https://github.com/wwh0411/FedMABench with the datasets at: https://huggingface.co/datasets/wwh0411/FedMABench.

cs.AI↗

arXiv2025

MAS-GPT: Training LLMs to Build LLM-based Multi-Agent Systems

LLM-based multi-agent systems (MAS) have shown significant potential in tackling diverse tasks. However, to design effective MAS, existing approaches heavily rely on manual configurations or multiple calls of advanced LLMs, resulting in inadaptability and high inference costs. In this paper, we simplify the process of building an MAS by reframing it as a generative language task, where the input is a user query and the output is a corresponding MAS. To address this novel task, we unify the representation of MAS as executable code and propose a consistency-oriented data construction pipeline to create a high-quality dataset comprising coherent and consistent query-MAS pairs. Using this dataset, we train MAS-GPT, an open-source medium-sized LLM that is capable of generating query-adaptive MAS within a single LLM inference. The generated MAS can be seamlessly applied to process user queries and deliver high-quality responses. Extensive experiments on 9 benchmarks and 5 LLMs show that the proposed MAS-GPT consistently outperforms 10+ baseline MAS methods on diverse settings, indicating MAS-GPT's high effectiveness, efficiency and strong generalization ability. Code will be available at https://github.com/rui-ye/MAS-GPT.

cs.CL↗

arXiv2025

Data Quality Control in Federated Instruction-tuning of Large Language Models

Federated Learning (FL) enables privacy-preserving collaborative instruction tuning of large language models (LLMs) by leveraging massively distributed data. However, the decentralized nature of FL exacerbates data quality challenges, as local clients lack global visibility to filter noisy or low-quality samples before training. To resolve this issue, we propose FedDQC, a novel federated instruction tuning framework with dynamic data quality control. Our approach introduces two key innovations. First, we propose instruction-response alignment (IRA), an efficient client-side metric for quality evaluation requiring only low-cost inference. We validate that higher-IRA data corresponds to more relevant and easier-to-learn question-answer pairs. Second, mirroring the human easy-to-hard knowledge acquisition process, we design a quality-aware hierarchical FL training framework, where the LLM is progressively fine-tuned from high- to low-IRA data in a collaborative manner. The framework also supports adaptive data quality assessment at each hierarchy, enabling dynamic adjustments throughout the training process. Extensive experiments on synthetic and real-world datasets show that our method significantly improves LLM performance on mixed-quality data in FL.

cs.LG↗

arXiv2025

Synthesizing Post-Training Data for LLMs through Multi-Agent Simulation

Post-training is essential for enabling large language models (LLMs) to follow human instructions. However, its effectiveness depends on high-quality instruction data, which is challenging to obtain in the real world due to privacy concerns, data scarcity, and high annotation costs. To fill this gap, inspired by the recent success of using LLMs to simulate human society, we propose MATRIX, a multi-agent simulator that automatically generates diverse text-based scenarios, capturing a wide range of real-world human needs in a realistic and scalable manner. Leveraging these outputs, we introduce a novel scenario-driven instruction generator MATRIX-Gen for controllable and highly realistic data synthesis. Extensive experiments demonstrate that our framework effectively generates both general and domain-specific data. On AlpacaEval 2 and Arena-Hard benchmarks, Llama-3-8B-Base, post-trained on datasets synthesized by MATRIX-Gen with just 20K instruction-response pairs, outperforms Meta's Llama-3-8B-Instruct model, which was trained on over 10M pairs.

cs.AI↗

arXiv2024

High-performance thin-film lithium niobate Mach-Zehnder modulator on thick silica buffering layer

High-speed photonic integrated circuits leveraging the thin-film lithium niobate (TFLN) platform present a promising approach to address the burgeoning global data traffic demands. As a pivotal component, TFLN-based electro-optic (EO) Mach-Zehnder modulators (MZMs) should exhibit low driving voltage, broad operation bandwidth, high extinction ration, and low insertion loss. However, the pursuit of both maximal EO overlap integral and minimal microwave loss necessitates a fundamental compromise between driving voltage and operational bandwidth. Here, we demonstrate high-performance TFLN EO MZMs constructed on a 12-μm-thick silica buried layer using periodic capacitively loaded traveling-wave electrodes. In contrast to their counterparts utilizing undercut etched silicon substrates or quartz substrates, our devices exhibit streamlined fabrication processes and enhanced modulation efficiency. Notably, the fabricated MZMs attains a high modulation efficiency of 1.25 Vcm in the telecom C-band, while maintaining a low EO roll-off of 1.3 dB at 67 GHz. Our demonstration offers a pathway to achieving perfect group velocity matching and break the voltage-bandwidth limit in a simplified configuration suitable for volume fabrication, thereby laying foundational groundwork for the advancement of high-performance TFLN MZMs and benefiting the next-generation PICs in optical telecommunication, signal processing and other applications.

physics.optics↗

arXiv2024

Are We There Yet? Revealing the Risks of Utilizing Large Language Models in Scholarly Peer Review

Scholarly peer review is a cornerstone of scientific advancement, but the system is under strain due to increasing manuscript submissions and the labor-intensive nature of the process. Recent advancements in large language models (LLMs) have led to their integration into peer review, with promising results such as substantial overlaps between LLM- and human-generated reviews. However, the unchecked adoption of LLMs poses significant risks to the integrity of the peer review system. In this study, we comprehensively analyze the vulnerabilities of LLM-generated reviews by focusing on manipulation and inherent flaws. Our experiments show that injecting covert deliberate content into manuscripts allows authors to explicitly manipulate LLM reviews, leading to inflated ratings and reduced alignment with human reviews. In a simulation, we find that manipulating 5% of the reviews could potentially cause 12% of the papers to lose their position in the top 30% rankings. Implicit manipulation, where authors strategically highlight minor limitations in their papers, further demonstrates LLMs' susceptibility compared to human reviewers, with a 4.5 times higher consistency with disclosed limitations. Additionally, LLMs exhibit inherent flaws, such as potentially assigning higher ratings to incomplete papers compared to full papers and favoring well-known authors in single-blind review process. These findings highlight the risks of over-reliance on LLMs in peer review, underscoring that we are not yet ready for widespread adoption and emphasizing the need for robust safeguards.

cs.CL↗

arXiv2024

KnowledgeSG: Privacy-Preserving Synthetic Text Generation with Knowledge Distillation from Server

The success of large language models (LLMs) facilitate many parties to fine-tune LLMs on their own private data. However, this practice raises privacy concerns due to the memorization of LLMs. Existing solutions, such as utilizing synthetic data for substitution, struggle to simultaneously improve performance and preserve privacy. They either rely on a local model for generation, resulting in a performance decline, or take advantage of APIs, directly exposing the data to API servers. To address this issue, we propose KnowledgeSG, a novel client-server framework which enhances synthetic data quality and improves model performance while ensuring privacy. We achieve this by learning local knowledge from the private data with differential privacy (DP) and distilling professional knowledge from the server. Additionally, inspired by federated learning, we transmit models rather than data between the client and server to prevent privacy leakage. Extensive experiments in medical and financial domains demonstrate the effectiveness of KnowledgeSG. Our code is now publicly available at https://github.com/wwh0411/KnowledgeSG.

cs.CR↗