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Rui-Hao Bi

Publications and source records attributed to Rui-Hao Bi.

9 recordsLinked to original sources

Ai2-Kit: Streamlining AI-Accelerated Ab Initio Workflows for Complex Chemical Systems

Molecular simulations of complex chemical systems, such as catalysis, electrochemistry, and energy storage, often need to capture the interplay of effects such as electronic structure, finite-temperature fluctuations, and electric-field response. Such complexity is difficult to address with traditional ab initio calculations, which are limited by the time and length scales they can reach. AI-accelerated ab initio (AI2) methods use machine learning potentials trained on first-principles data to replace expensive electronic-structure calculations, extending ab initio accuracy to these regimes, but their routine application requires reliable workflows that connect first-principles calculations, model training, molecular dynamics, enhanced sampling, trajectory analysis, and HPC orchestration. Here we present ai2-kit, a software toolkit for developing accessible, reproducible, and extensible AI2 workflows. ai2-kit provides high-semantic-density command-line interfaces and Python APIs for structure and dataset conversion, batch task generation, active-learning screening, job orchestration, and workflow recovery. We demonstrate ai2-kit in four representative applications: active-learning-based machine learning potential construction, free-energy perturbation for redox and acid-base processes, electrochemical machine learning potentials for electrified interfaces, and spectroscopies from machine learning molecular dynamics. ai2-kit also provides AI-agent skills that help users adapt these use cases into customized workflows for their own chemical systems and computational software stacks. Together, ai2-kit helps turn AI2 methods from bespoke computational protocols into reusable and extensible workflows for complex chemical systems, from model construction to property prediction.

physics.chem-ph

Accessing the performance of CC2 for excited state dynamics: a benchmark study with pyrazine

In this work, we access the performance of RI-CC2 for ultrafast internal conversion using pyrazine as a benchmark system. We implement analytical gradients and nonadiabatic coupling vectors for RI-CC2 in the Q-Chem package and employ them in two complementary approaches: a reduced-dimensionality vibronic coupling (VC) model and full-dimensional ab initio on-the-fly trajectory surface hopping simulations. To accelerate the on-the-fly dynamics, we employ a diabatic artificial neural network model trained on RI-CC2 data. Both the VC model and the full-dimensional dynamics reveal that the dark $A_\text{1u}$ state actively participates in the internal conversion process. RI-CC2 identifies the $Q_\text{9a}$ and $Q_\text{8a}$ vibrational modes as key drivers of the coherent population transfer between the $A_\text{1u}$ and $B_\text{3u}$. The on-the-fly dynamics reproduce the experimental $B_\text{2u}$ population decay time of 26 fs, consistent with the measured value of $22\pm3$ fs. The high-quality dataset of energies, forces, and nonadiabatic couplings generated here provides a valuable resource for future machine-learning developments, while the stochastic variant sRI-CC2 promises to extend such dynamics to larger molecular systems.

physics.chem-ph

Generalized quantum master equation from memory kernel coupling theory

The generalized quantum master equation provides a powerful framework for non-Markovian dynamics of open quantum systems. However, the accurate and efficient evaluation of the memory kernel remains a challenge. In this work, we introduce a comprehensive tensorial extension to the Memory Kernel Coupling Theory (MKCT) to overcome this bottleneck. By elevating the original scalar formalism to a tensorial framework, the extended MKCT enables the calculation of general expectation values and cross-correlation functions. We demonstrate the numerical accuracy and efficiency of this method across multiple benchmark systems: capturing transient populations and coherences in the spin-boson model, resolving the excitonic absorption spectrum of the Fenna-Matthews-Olson complex, and simulating charge mobility in one-dimensional lattice models. These successful applications establish the tensorial MKCT as a highly efficient tool for investigating complex dynamics in open quantum systems.

physics.chem-ph

Projection-Based Memory Kernel Coupling Theory for Quantum Dynamics: A Stable Framework for Non-Markovian Simulations

We present a projection-based, stability-preserving methodology for computing time correlation functions in open quantum systems governed by generalized quantum master equations with non-Markovian effects. Building upon the memory kernel coupling theory framework, our approach transforms the memory kernel hierarchy into a system of coupled linear differential equations through Mori-Zwanzig projection, followed by spectral projection onto stable eigenmodes to ensure numerical stability. By systematically eliminating unstable modes while preserving the physically relevant dynamics, our method guaranties long-time convergence without introducing artificial damping or ad hoc modifications. The theoretical framework maintains mathematical rigor through orthogonal projection operators and spectral decomposition. Benchmark calculations on the spin-boson model show excellent agreement with exact hierarchical equations of motion results while achieving significant computational efficiency. This approach provides a versatile and reliable framework for simulating non-Markovian dynamics in complex systems.

quant-ph

Scalable Neural Quantum State based Kernel Polynomial Method for Optical Properties from the First Principle

Variational optimization of neural-network quantum state representations has achieved FCI-level accuracy for ground state calculations, yet computing optical properties involving excited states remains challenging. In this work, we present a neural-network-based variational quantum Monte Carlo approach for ab-initio absorption spectra. We leverage parallel batch autoregressive sampling and GPU-supported local energy parallelism to efficiently compute ground states of complex systems. By integrating neural quantum ground states with the kernel polynomial method, our approach accurately calculates absorption spectra for large molecules with over 50 electrons, achieving FCI-level precision. The proposed algorithm demonstrates superior scalability and reduced runtime compared to FCI, marking a significant step forward in optical property calculations for large-scale quantum systems.

physics.chem-ph

Universal Structure of Computing Moments for Exact Quantum Dynamics: Application to Arbitrary System-Bath Couplings

We introduce a general procedure for computing higher-order moments of correlation functions in open quantum systems, extending the scope of our recent work on Memory Kernel Coupling Theory (MKCT) [W. Liu, Y. Su, Y. Wang, and W. Dou, arXiv:2407.01923 (2024)]. This approach is demonstrated for arbitrary system-bath coupling that can be expressed as polynomial, $H_{SB} = \hat{V} (\alpha_0 + \alpha_1 \hat{q} + \alpha_2 \hat{q}^2+ \dots)$, where we show that the recursive commutators of a system operator obey a universal hierarchy. Exploiting this structure, the higher-order moments are obtained by evaluating the expectation values of the system and bath operators separately, with bath expectation values derived from the derivatives of a generating function. We further apply MKCT to compute the dipole autocorrelation function for the spin-boson model with both linear and quadratic coupling, achieving agreement with the hierarchical equations of motion approach. Our findings suggest a promising path toward accurate dynamics for complex open quantum systems.

quant-ph

Orbital Surface Hopping from Orbital Quantum-Classical Liouville Equation for Nonadiabatic Dynamics of Many-electron Systems

Accurate simulation the many-electronic nonadiabatic dynamics process at metal surfaces remains as a significant task. In this work, we present an orbital surface hopping (OSH) algorithm rigorously derived from the orbital quantum classical Liouville equation (o-QCLE) to deal with nonadiabatic dynamics for many-electron systems. This OSH algorithm closely connects with the popular Independent Electron Surface Hopping (IESH) method, which has shown remarkable success in addressing these nonadiabatic phenomena, except that electrons hop between orbitals. We compare OSH with IESH approach and benchmark these two algorithms against the surface hopping method with a full Configuration Interaction (FCI) wavefunction. Our approach shows strong agreement with IESH and FCI-SH results for molecular orbital populations and kinetic energy relaxation and in high efficiency, demonstrating the ability of the new OSH method in capturing key aspects of many-electronic nonadiabatic dynamics.

physics.chem-ph

Spin-lattice relaxation with non-linear couplings: Comparison between Fermi's golden rule and extended dissipaton equation of motion

Fermi's golden rule (FGR) offers an empirical framework for understanding the dynamics of spin-lattice relaxation in magnetic molecules, encompassing mechanisms like direct (one-phonon) and Raman (two-phonon) processes. These principles effectively model experimental longitudinal relaxation rates, denoted as $T_1^{-1}$. However, under scenarios of increased coupling strength and nonlinear spin-lattice interactions, FGR's applicability may diminish. This paper numerically evaluates the exact spin-lattice relaxation rate kernels, employing the extended dissipaton equation of motion (DEOM) formalism. Our calculations reveal that when quadratic spin-lattice coupling is considered, the rate kernels exhibit a free induction decay-like feature, and the damping rates depend on the interaction strength. We observe that the temperature dependence predicted by FGR significantly deviates from the exact results since FGR ignores the non-Markovian nature of spin-lattice relaxation. Our methods can be readily applied to other systems with nonlinear spin-lattice interactions and provide valuable insights into the temperature dependence of $T_1$ in molecular qubits.

physics.chem-ph

Electronic Friction Near Metal Surface: Incorporating Nuclear Quantum Effect with Ring Polymer Molecular Dynamics

Molecular dynamics with electronic friction (MDEF) approach can describe nonadiabatic effects accurately at metal surfaces in the weak nonadiabatic limit. That being said, MDEF treats nuclear motion classically, such that the nuclear quantum effects are missing completely in the approach. To address this limitation, we combine electronic friction with Ring Polymer Molecular Dynamics (RPMD). In particular, we apply the averaged electronic friction from the metal surface to the centroid mode of the ring polymer. We benchmark our approach against quantum dynamics to show that electronic friction with RPMD (EF-RPMD) can capture zero-point energy as well as transition dynamics accurately. In addition, we show EF-RPMD can correctly predict the electronic transfer rate near metal surfaces in the tunneling limit as well as the barrier crossing limit. We expect our approach will be very useful to study nonadiabatic dynamics near metal surface when nuclear quantum effects become essential.

physics.chem-ph