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Ruifeng Yuan

Publications and source records attributed to Ruifeng Yuan.

At least 19 recordsLinked to original sources
arXiv2026

On the Design Fundamentals of Pixel Text Representation Learning

Text-rich visual inputs require models that can read, retrieve, and compress language directly in pixel space, yet existing pixel-text encoders struggle with fixed resolution pretraining, visual shortcut learning, weak visual grounding, and multilingual visual text understanding. In this work, we investigate the fundamental design principles required for robust visual text representation learning. Through systematic controlled ablations, we identify four critical components: variable image resolutions and rendered font sizes provide spatial proxies for high-resolution document generalization; natural image-text pairs are indispensable for grounding and prevent text-only collapse; layout-aware rendering helps prevent pixel-level shortcuts; and a two-stage multilingual curriculum enables effective cross-lingual alignment. By integrating these principles into a scalable training recipe, we train Pixel Linguist II, a native-resolution vision encoder trained with on-the-fly rendering, unified contrastive grounding, and a multilingual curriculum over 280M training examples. Pixel Linguist II sets new state-of-the-art results on English, cross-lingual, and multilingual Visual STS and ViDoRe, while also enabling better MLLM downstream evaluation. Notably, Pixel Linguist II remains robust under 80\% visual token compression, showing great promise for optical context compression. Our code and resources are available at https://github.com/Pixel-Linguist/Pixel-Linguist-II.

cs.CV↗
arXiv2026

RadSight: Towards Perceptually Reliable Multimodal Radiology Image Understanding

Medical multimodal large language models (MLLMs) are increasingly expected to perform complex image understanding tasks, yet their reliability is often compromised by frequent errors in visual interpretation. To systematically trace these failures, we traverse the hierarchy from high-level clinical tasks down to fundamental visual perception. We therefore introduce Perception-Bench, a large-scale benchmark comprising 1.13 million samples that assesses medical MLLMs across six dimensions: attribute judgment, spatial grounding, spatial understanding, disease prediction, anomaly detection, and report generation, spanning both 2D and 3D radiology images. Our analysis on Perception-Bench reveals that existing MLLMs lack the ability to capture even the most basic lesion attributes, such as location, size, and density. This inability to ground clinical outputs in primary visual evidence reveals that the models' diagnostic unreliability is rooted in a critical but overlooked bottleneck in low-level visual perception. Motivated by this, we propose RadSight, a perception-driven MLLM built upon a dual 2D/3D encoder architecture that preserves native imaging spatial structures. RadSight formulates medical image understanding as a four-stage progressive process: visual-language alignment, fine-grained visual perception, clinical diagnosis, and diagnostic interpretation. The model is trained on an 8.37 million perception-oriented corpus using progressive curriculum learning. On Perception-Bench, RadSight consistently outperforms existing MLLMs across all six evaluation dimensions, with particularly strong gains in spatial grounding and clinical diagnosis. It also achieves consistent improvements on public 2D and 3D medical benchmarks, further demonstrating that robust low-level visual perception is a critical foundation for reliable clinical understanding. Code and model will be publicly available.

cs.CV↗
arXiv2026

AtomiMed: Hierarchical Atomic Fact-Checking for Universal Clinical-Aware Medical Report Evaluation

Traditional metrics for Medical Report Generation (MRG) predominantly rely on surface-level n-gram overlap, which fails to capture clinical factual accuracy and often overlooks catastrophic diagnostic errors. We address this fundamental limitation by proposing \textbf{AtomiMed}, a universal, modality-agnostic evaluation framework that decomposes complex medical narratives into a standardized, multi-level hierarchy of Atomic Clinical Facts, encompassing Disease-level entities and Attribute-level descriptors, including location, morphology, and severity. By implementing an Agentic Cross-Verification loop between ground-truth and predicted reports, AtomiMed simulates a multi-radiologist peer-review process to verify clinical consistency, thus enabling the decoupled assessment of diagnostic detection and descriptive accuracy. To facilitate standardized evaluation, we introduce \textbf{MRGEvalKit}, an open-source toolkit for automated hierarchical extraction, and curate \textbf{OmniMRG-Bench}, a comprehensive multi-modal benchmark covering X-ray, CT, MRI, and Ultrasound. Extensive experiments on multiple expert-annotated reader studies demonstrate that AtomiMed achieves significantly higher correlation with human radiologist judgment compared to traditional and model-based metrics. Our code are release at https://github.com/Venn2336/MRGEvalkit

cs.CE↗
arXiv2026

Disease-Centric Vision-Language Pretraining with Hybrid Visual Encoding for 3D Computed Tomography

Vision-language pre-training (VLP) holds great promise for general-purpose medical AI by leveraging radiology reports as rich textual supervision, yet existing methods struggle with 3D CT imaging due to inefficient visual backbones and coarse semantic alignment. To address these issues, we propose a tailored VLP framework featuring three key components: (1) a CNN-ViT hybrid encoder that replaces ViT's patch embedding with a 3D CNN backbone to efficiently capture local anatomical details while preserving global attention and compatibility with pre-trained cross-modal priors; (2) a disease-level contrastive learning mechanism using learnable query tokens to dynamically extract disease-specific semantics from full reports and align them with corresponding visual features, thereby disentangling distinct diseases within the same anatomical region; and (3) a diagnosis-aware prompt strategy that employs real clinical phrases and aggregated disease prototypes to bridge the pre-training-inference gap and enhance zero-shot diagnostic reliability. Our model achieves state-of-the-art performance on CT-RATE (84.4% AUC, +5.1%) and Rad-ChestCT (75.4% AUC, +5.4%), with even larger gains (+9.8% AUC) on a challenging 60-disease benchmark, and demonstrates strong transferability to radiology report generation, underscoring the generality and clinical utility of our approach.

cs.CV↗
arXiv2026

Understanding the Behaviors of Environment-aware Information Retrieval

Recent retrieval-augmented generation (RAG) approaches have demonstrated strong capability in handling complex queries, yet current research overlooks a critical challenge: different retrievers require fundamentally different query formulation strategies for optimal performance. In this work, we present the first systematic analysis of how LLMs can learn to adapt their query formulation strategies for different retrievers via reinforcement learning (RL). Our empirical study reveals that RL effectively teaches an LLM to tailor its queries to specific retriever characteristics. We discover that different retrievers exhibit surprisingly distinct optimal query styles (e.g., descriptive vs. question-like), suggesting strategies learned for one retriever ineffective for another. We further show that performance can be enhanced by incorporating retriever-specific human guidance and by scaling model size. To facilitate learning over multi-retrieval-step trajectories, we introduce a branching-based rollout technique that improves training stability. Our work provides the first empirical evidence and actionable insights for building truly retriever-aware RAG systems. Code and resources are available at https://github.com/LCO-Embedding/Envs-aware-Information-Retrieval.

cs.CL↗
arXiv2026

CT-FineBench: A Diagnostic Fidelity Benchmark for Fine-Grained Evaluation of CT Report Generation

The evaluation of generated reports remains a critical challenge in Computed Tomography (CT) report generation, due to the large volume of text, the diversity and complexity of findings, and the presence of fine-grained, disease-oriented attributes. Conventional evaluation metrics offer only coarse measures of lexical overlap or entity matching and fail to reflect the granular diagnostic accuracy required for clinical use. To address this gap, we propose CT-FineBench, a benchmark built from CT-RATE and Merlin to evaluate the fine-grained factual consistency of CT reports, constructed from CT-RATE and Merlin. Our benchmark is constructed through a meticulous, Question-Answering (QA) based process: first, we identify and structure key, finding-specific clinical attributes (like location, size, margin). Second, we systematically transform these attributes into a QA dataset, where questions probe for specific clinical details grounded in gold-standard reports. The evaluation protocol for CT-FineBench involves using this QA dataset to query a machine-generated report and scoring the correctness of the answers. This allows for a comprehensive, interpretable, and clinically-relevant assessment, moving beyond superficial lexical overlap to pinpoint specific clinical errors. Experiments show that CT-FineBench correlates better with expert clinical assessment and is substantially more sensitive to fine-grained factual errors than prior metrics.

cs.AI↗
arXiv2026

Rethinking the Efficiency and Effectiveness of Reinforcement Learning for Radiology Report Generation

Radiologists highly desire fully automated AI for radiology report generation (R2G), yet existing approaches fall short in clinical utility. Reinforcement learning (RL) holds potential to address these shortcomings, but its adoption in this task remains underexplored. In this paper, we revisit RL in terms of data efficiency and optimization effectiveness for R2G tasks. First, we explore the impact of data quantity and quality on the performance of RL in medical contexts, revealing that data quality plays a more critical role than quantity. To this end, we propose a diagnostic diversity-based data sampling strategy that enables comparable performance with fewer samples. Second, we observe that the majority of tokens in radiology reports are template-like and diagnostically uninformative, whereas the low frequency of clinically critical tokens heightens the risk of being overlooked during optimization. To tackle this, we introduce Diagnostic Token-weighted Policy Optimization (DiTPO), which directly optimizes for clinical accuracy by using a diagnostic F1 score as the reward signal. Unlike standard RL approaches that treat all tokens equally, DiTPO explicitly models the varying importance of different tokens through rule- or gradient-based mechanisms to prioritize clinically relevant content. Extensive experiments on the MIMIC-CXR, IU-Xray, and CheXpert Plus datasets demonstrate that our framework achieves state-of-the-art (SOTA) performance while requiring substantially fewer training samples in RL. Notably, on MIMIC-CXR, our framework attains an F1 score of 0.516 using only 20% of the RL training samples.

cs.CV↗
arXiv2026

AR-Omni: A Unified Autoregressive Model for Any-to-Any Generation

Real-world perception and interaction are inherently multimodal, encompassing not only language but also vision and speech, which motivates the development of "Omni" MLLMs that support both multimodal inputs and multimodal outputs. While a sequence of omni MLLMs has emerged, most existing systems still rely on additional expert components to achieve multimodal generation, limiting the simplicity of unified training and inference. Autoregressive (AR) modeling, with a single token stream, a single next-token objective, and a single decoder, is an elegant and scalable foundation in the text domain. Motivated by this, we present AR-Omni, a unified any-to-any model in the autoregressive paradigm without any expert decoders. AR-Omni supports autoregressive text and image generation, as well as streaming speech generation, all under a single Transformer decoder. We further address three practical issues in unified AR modeling: modality imbalance via task-aware loss reweighting, visual fidelity via a lightweight token-level perceptual alignment loss for image tokens, and stability-creativity trade-offs via a finite-state decoding mechanism. Empirically, AR-Omni achieves strong quality across three modalities while remaining real-time, achieving a 0.88 real-time factor for speech generation.

cs.LG↗
arXiv2026

An efficient treatment of heat-flux boundary conditions in GSIS for rarefied gas flows

Heat-flux boundary conditions are challenging to implement efficiently in rarefied gas flow simulations because the wall-reflected gas temperature and density must be determined dynamically during the computation. This paper aims to tackle this problem within the general synthetic iterative scheme (GSIS), where the Boltzmann kinetic equation is solved deterministically in an outer loop and macroscopic synthetic equations are solved in an inner loop. To avoid kinetic-macroscopic boundary-flux mismatch and the resulting convergence bottlenecks, for the macroscopic boundary flux at every inner iteration, the incident increment is estimated using a Maxwellian distribution, and then the reflected contribution is obtained by boundary conditions consistent with those in the kinetic solver. In addition to retaining the fast-converging and asymptotic-preserving properties of GSIS, the proposed method significantly reduces the iterations required to determine the wall-reflected gas parameters. Numerical simulations of rarefied gas flows in and around a 3D nozzle, a 2D adiabatic cylinder, and a 2D annular heat-transfer configuration show good agreement with the direct simulation Monte Carlo method, while achieving substantial efficiency gains over conventional iterative schemes.

physics.comp-ph↗
arXiv2025

Surrogate-assisted airfoil optimization in rarefied gas flows

With growing interest in space exploration, optimized airfoil design has become increasingly important. However, airfoil design in rarefied gas flows remains underexplored because solving the Boltzmann equation formulated in a six dimensional phase space is time consuming. To address this problem, a solver-in-the-loop Bayesian optimization framework for symmetric, thickness-only airfoils is developed. First, airfoils are parameterized using a class shape transformation that enforce geometric admissibility. Second, a Gaussian process expected improvement surrogate is coupled in batches to a fast converging, asymptotic preserving Boltzmann solver for sample efficient exploration. Drag minimizing airfoils are identified in a wide range of gas rarefaction. It is found that, at Mach numbers Ma=2 and 4, the streamwise force increases with the gas rarefaction and shifts from pressure dominated to shear dominated drag, while optimization reduces drag at all conditions. The benefit of optimization peaks in the weakly rarefied regime, about 30% at Ma=2 and 40 to 50% at Ma=4, and falls to a few percent in transition and free-molecular flow regimes. Drag decomposition shows that these gains come mainly from reduced pressure drag, with viscous drag almost unchanged. The optimal airfoils form a coherent rarefaction-aware family: they retain a smooth, single-peaked thickness profile, are aft-loaded at low gas rarefaction, and exhibit a forward shift of maximum thickness and thickness area toward mid-chord as gas rarefaction increases. These trends provide a physically interpretable map that narrows the design space.

physics.flu-dyn↗
arXiv2025

SCALE: Selective Resource Allocation for Overcoming Performance Bottlenecks in Mathematical Test-time Scaling

Test-time compute scaling has emerged as a powerful paradigm for enhancing mathematical reasoning in large language models (LLMs) by allocating additional computational resources during inference. However, current methods employ uniform resource distribution across all reasoning sub-problems, creating fundamental bottlenecks where challenging sub-problems receive insufficient attention while routine operations consume disproportionate resources. This uniform allocation creates performance bottlenecks where additional computational resources yield diminishing returns. Inspired by dual-process theory, we propose \textbf{SCALE} (Selective Resource Allocation), a framework that selectively allocates computational resources based on sub-problem difficulty. SCALE operates through four stages: (1) problem decomposition into sequential reasoning sub-problems, (2) difficulty assessment of each sub-problem to distinguish between routine operations and computationally challenging sub-problems, (3) selective processing mode assignment between System 1 for simple sub-problems and System 2 for complex ones, and (4) sequential execution with context propagation. By concentrating resources on challenging sub-problems while processing routine operations efficiently, SCALE achieves substantial performance improvements with superior resource utilization. Extensive experiments demonstrate that SCALE significantly outperforms uniform scaling baselines, achieving accuracy improvements of up to 13.75 percentage points (57.50% to 71.25% on AIME25) while reducing computational costs by 33%-53%, representing a major advance in test-time scaling that addresses fundamental limitations of current approaches.

cs.CL↗
arXiv2025

A fast-converging and asymptotic-preserving method for adjoint shape optimization of rarefied gas flows

Adjoint based shape optimization is a powerful technique in fluid-dynamics optimization, capable of identifying an optimal shape within only dozens of design iterations. However, when extended to rarefied gas flows, the computational cost becomes enormous because both the six dimensional primal and adjoint Boltzmann equations must be solved for each candidate shape. Building on the general synthetic iterative scheme (GSIS) for solving the primal Boltzmann model equation, this paper presents a fast converging and asymptotic preserving method for solving the adjoint kinetic equation. The GSIS accelerates the convergence of the adjoint kinetic equation by incorporating solutions of macroscopic synthetic equations, whose constitutive relations include the Newtonian stress law along with higher order terms capturing rarefaction effects. As a result, the method achieves asymptotic preservation (allowing the use of large spatial cell sizes in the continuum limit) while maintaining accuracy in highly rarefied regimes. Numerical tests demonstrate exceptional performance on drag minimization problems for 3D bodies, achieving drag reductions of 34.5% in the transition regime and 61.1% in the slip-flow regime within roughly ten optimization iterations. For each candidate shape, converged solutions of the primal and adjoint Boltzmann equation are obtained with only a few dozen updates of the velocity distribution function, dramatically reducing computational cost compared with conventional methods.

physics.comp-ph↗
arXiv2025

LIMOPro: Reasoning Refinement for Efficient and Effective Test-time Scaling

Large language models (LLMs) have demonstrated remarkable reasoning capabilities through test-time scaling approaches, particularly when fine-tuned with chain-of-thought (CoT) data distilled from more powerful large reasoning models (LRMs). However, these reasoning chains often contain verbose elements that mirror human problem-solving, categorized as progressive reasoning (the essential solution development path) and functional elements (verification processes, alternative solution approaches, and error corrections). While progressive reasoning is crucial, the functional elements significantly increase computational demands during test-time inference. We introduce PIR (Perplexity-based Importance Refinement), a principled framework that quantitatively evaluates the importance of each reasoning step based on its impact on answer prediction confidence. PIR systematically identifies and selectively prunes only low-importance functional steps while preserving progressive reasoning components, creating optimized training data that maintains the integrity of the core solution path while reducing verbosity. Models fine-tuned on PIR-optimized data exhibit superior test-time scaling properties, generating more concise reasoning chains while achieving improved accuracy (+0.9\% to +6.6\%) with significantly reduced token usage (-3\% to -41\%) across challenging reasoning benchmarks (AIME, AMC, and GPQA Diamond). Our approach demonstrates strong generalizability across different model sizes, data sources, and token budgets, offering a practical solution for deploying reasoning-capable LLMs in scenarios where efficient test-time scaling, response time, and computational efficiency are valuable constraints.

cs.CL↗
arXiv2025

Wetted-Area Minimum and Inlet-Outlet Reciprocity in Optimal Manifolds of Rarefied Gas Flows

While flow optimization has been extensively studied in the continuum regime, its extension to rarefied gas flows remains less explored. Here, based on the Boltzmann model equation, an adjoint topology optimization method is employed to design two-dimensional single inlet multi outlet manifolds, aiming to maximize the total mass flow rate while maintaining outflow uniformity. Two key findings are revealed. (1) analogous to the Knudsen minimum in mass flow rate in the transition regime, a wetted-area minimum is identified, but in the slip flow regime. This phenomenon arises from the competition between flow bend loss and surface friction loss, with the latter being affected by velocity slip at the solid surface. (2) the inlet outlet reciprocity emerges in the free molecular flow regime, where the optimal design becomes invariant to inlet outlet orientation and pressure ratio. Additional insights are gained regarding the channel curvature, compressibility effects, and the constraint of outflow uniformity. These findings elucidate the mechanisms governing rarefied gas transport and offer design guidance for manifolds operating in vacuum environments.

physics.flu-dyn↗
arXiv2025

VL-Cogito: Progressive Curriculum Reinforcement Learning for Advanced Multimodal Reasoning

Reinforcement learning has proven its effectiveness in enhancing the reasoning capabilities of large language models. Recent research efforts have progressively extended this paradigm to multimodal reasoning tasks. Due to the inherent complexity and diversity of multimodal tasks, especially in semantic content and problem formulations, existing models often exhibit unstable performance across various domains and difficulty levels. To address these limitations, we propose VL-Cogito, an advanced multimodal reasoning model trained via a novel multi-stage Progressive Curriculum Reinforcement Learning (PCuRL) framework. PCuRL systematically guides the model through tasks of gradually increasing difficulty, substantially improving its reasoning abilities across diverse multimodal contexts. The framework introduces two key innovations: (1) an online difficulty soft weighting mechanism, dynamically adjusting training difficulty across successive RL training stages; and (2) a dynamic length reward mechanism, which encourages the model to adaptively regulate its reasoning path length according to task complexity, thus balancing reasoning efficiency with correctness. Experimental evaluations demonstrate that VL-Cogito consistently matches or surpasses existing reasoning-oriented models across mainstream multimodal benchmarks spanning mathematics, science, logic, and general understanding, validating the effectiveness of our approach.

cs.CV↗
arXiv2025

Lingshu: A Generalist Foundation Model for Unified Multimodal Medical Understanding and Reasoning

Multimodal Large Language Models (MLLMs) have demonstrated impressive capabilities in understanding common visual elements, largely due to their large-scale datasets and advanced training strategies. However, their effectiveness in medical applications remains limited due to the inherent discrepancies between data and tasks in medical scenarios and those in the general domain. Concretely, existing medical MLLMs face the following critical limitations: (1) limited coverage of medical knowledge beyond imaging, (2) heightened susceptibility to hallucinations due to suboptimal data curation processes, (3) lack of reasoning capabilities tailored for complex medical scenarios. To address these challenges, we first propose a comprehensive data curation procedure that (1) efficiently acquires rich medical knowledge data not only from medical imaging but also from extensive medical texts and general-domain data; and (2) synthesizes accurate medical captions, visual question answering (VQA), and reasoning samples. As a result, we build a multimodal dataset enriched with extensive medical knowledge. Building on the curated data, we introduce our medical-specialized MLLM: Lingshu. Lingshu undergoes multi-stage training to embed medical expertise and enhance its task-solving capabilities progressively. Besides, we preliminarily explore the potential of applying reinforcement learning with verifiable rewards paradigm to enhance Lingshu's medical reasoning ability. Additionally, we develop MedEvalKit, a unified evaluation framework that consolidates leading multimodal and textual medical benchmarks for standardized, fair, and efficient model assessment. We evaluate the performance of Lingshu on three fundamental medical tasks, multimodal QA, text-based QA, and medical report generation. The results show that Lingshu consistently outperforms the existing open-source multimodal models on most tasks ...

cs.CL↗
arXiv2025

Exploring Training and Inference Scaling Laws in Generative Retrieval

Generative retrieval reformulates retrieval as an autoregressive generation task, where large language models (LLMs) generate target documents directly from a query. As a novel paradigm, the mechanisms that underpin its performance and scalability remain largely unexplored. We systematically investigate training and inference scaling laws in generative retrieval, exploring how model size, training data scale, and inference-time compute jointly influence performance. We propose a novel evaluation metric inspired by contrastive entropy and generation loss, providing a continuous performance signal that enables robust comparisons across diverse generative retrieval methods. Our experiments show that n-gram-based methods align strongly with training and inference scaling laws. We find that increasing model size, training data scale, and inference-time compute all contribute to improved performance, highlighting the complementary roles of these factors in enhancing generative retrieval. Across these settings, LLaMA models consistently outperform T5 models, suggesting a particular advantage for larger decoder-only models in generative retrieval. Our findings underscore that model sizes, data availability, and inference computation interact to unlock the full potential of generative retrieval, offering new insights for designing and optimizing future systems.

cs.IR↗
arXiv2025

OpenCoder: The Open Cookbook for Top-Tier Code Large Language Models

Large language models (LLMs) for code have become indispensable in various domains, including code generation, reasoning tasks and agent systems. While open-access code LLMs are increasingly approaching the performance levels of proprietary models, high-quality code LLMs suitable for rigorous scientific investigation, particularly those with reproducible data processing pipelines and transparent training protocols, remain limited. The scarcity is due to various challenges, including resource constraints, ethical considerations, and the competitive advantages of keeping models advanced. To address the gap, we introduce OpenCoder, a top-tier code LLM that not only achieves performance comparable to leading models but also serves as an "open cookbook" for the research community. Unlike most prior efforts, we release not only model weights and inference code, but also the reproducible training data, complete data processing pipeline, rigorous experimental ablation results, and detailed training protocols for open scientific research. Through this comprehensive release, we identify the key ingredients for building a top-tier code LLM: (1) code optimized heuristic rules for data cleaning and methods for data deduplication, (2) recall of text corpus related to code and (3) high-quality synthetic data in both annealing and supervised fine-tuning stages. By offering this level of openness, we aim to broaden access to all aspects of a top-tier code LLM, with OpenCoder serving as both a powerful model and an open foundation to accelerate research, and enable reproducible advancements in code AI.

cs.CL↗