Ruijuan Liang | Searcharxiv

arXiv2026

Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insights

Graph foundation models (GFM) aim to acquire transferable knowledge by pre-training on diverse graphs, which can be adapted to various downstream tasks. However, domain shift in graphs is inherently two-dimensional: graphs differ not only in what they describe (topic domains) but also in how they are represented (format domains). Most existing GFM benchmarks vary only topic domains, thereby obscuring how knowledge transfers across both dimensions. We present a new benchmark that jointly evaluates topic and format gaps across the full GFM pipeline, including multi-domain self-supervised pre-training and few-shot downstream adaptation, and provides a timely evaluation of recent GFMs in the rapidly evolving landscape. Our protocol enables controlled assessment in four settings: (i) pre-training on diverse topics and formats, while adapting to unseen downstream datasets; (ii) same pre-training as in (i), while adapting to seen datasets; (iii) pre-training on a single topic domain, while adapting to other topics; (iv) pre-training on a base format, while adapting to other formats. This two-axis evaluation disentangles semantic generalization from robustness to representational shifts. We conduct extensive evaluations of eight state-of-the-art GFMs on 33 datasets spanning seven topic domains and six format domains, surfacing new empirical observations and practical insights for future research. Codes/data are available at https://github.com/smufang/GFMBenchmark.

cs.CL↗

arXiv2025

Event-Aware Prompt Learning for Dynamic Graphs

Real-world graph typically evolve via a series of events, modeling dynamic interactions between objects across various domains. For dynamic graph learning, dynamic graph neural networks (DGNNs) have emerged as popular solutions. Recently, prompt learning methods have been explored on dynamic graphs. However, existing methods generally focus on capturing the relationship between nodes and time, while overlooking the impact of historical events. In this paper, we propose EVP, an event-aware dynamic graph prompt learning framework that can serve as a plug-in to existing methods, enhancing their ability to leverage historical events knowledge. First, we extract a series of historical events for each node and introduce an event adaptation mechanism to align the fine-grained characteristics of these events with downstream tasks. Second, we propose an event aggregation mechanism to effectively integrate historical knowledge into node representations. Finally, we conduct extensive experiments on four public datasets to evaluate and analyze EVP.

cs.LG↗