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Ruitao Ma

Publications and source records attributed to Ruitao Ma.

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Monomeric machine learning potential for general covalent molecules: linear alkanes as an example

Machine-learning potentials (MLPs) have become important tools for modern molecular simulations. However, developing models that simultaneously achieve high accuracy and high computational efficiency remains a significant challenge. In this work, we extend the recently proposed MB-PIPNet framework to general covalently bonded molecular systems by combining monomer-based energy decomposition, permutationally invariant polynomial (PIP) descriptors, and neural networks within a fragmentation-based strategy. Within this framework, the total potential energy is represented as a sum of effective monomeric contributions, where PIPs provide compact and chemically motivated descriptions of both monomer internal structures and their local chemical environments. As a proof-of-concept application, we apply the MB-PIPNet framework to linear alkanes, using n-Tetradecane as a representative system, and benchmark its performance against established atomistic machine-learning models. The resulting MB-PIPNet potential accurately reproduces reference ab initio electronic energies and reliably captures key molecular properties, including torsional potential energy profiles, harmonic vibrational frequencies, and vibrational power spectra obtained from molecular dynamics simulations. Importantly, MB-PIPNet demonstrates a substantial advantage in computational efficiency over other MLP models for combined energy and force evaluations. These results establish MB-PIPNet as a scalable and efficient framework for constructing MLPs, providing an additional route for large-scale quantum and classical simulations of complex molecular systems.

physics.chem-ph

Extending the atomic decomposition and many-body representation, a chemistry-motivated monomer-centered approach for machine learning potentials

Most widely used machine learned (ML) potentials for condensed phase applications rely on many-body permutationally invariant polynomial (PIP) or atom-centered neural networks (NN). However, these approaches often lack chemical interpretability in atomistic energy decomposition and the computational efficiency of traditional force fields has not been fully achieved. Here, we present a novel method that combines aspects of both approaches, and achieves state-of-the-art balance of accuracy and force field-level speed. This method utilizes a monomer-centered representation, where the potential energy is decomposed into the sum of chemically meaningful monomeric energies. Without sophisticated neural network design, the structural descriptors of monomers are described by 1-body and 2-body effective interactions, enforced by appropriate sets of PIPs as inputs to the feed forward NN. We demonstrate the performance of this method through systematic assessments of models for gas-phase water trimer, liquid water, and also liquid CO2. The high accuracy, fast speed, and flexibility of this method provide a new route for constructing accurate ML potentials and enabling large-scale quantum and classical simulations for complex molecular systems.

physics.chem-ph