arXiv subjects

Ruslan P. Kurta

Publications and source records attributed to Ruslan P. Kurta.

12 recordsLinked to original sources

arXiv2026

Imaging aerosolized viruses with an X-ray free-electron laser using single-particle rotational invariants

X-ray free-electron lasers (XFELs) enable diffraction-before-destruction measurements of individual nanosized bioparticles, making it possible to study the structure and dynamics of non-crystalline targets under near-biologically relevant conditions. In this work, we employ rotational invariants for model-guided and ab initio three-dimensional (3D) structure determination of aerosolized bacteriophages PR772 measured with an XFEL. The rotational invariants derived from diffraction patterns collected during multiple independent XFEL experiments facilitate the characterization of similarities and structural variations within the measured ensembles of PR772 particles. Despite modest experimental resolution, we can identify various structural features of the viruses, including the asymmetric nature of capsid distortions from the perfect icosahedral shape, density variations in the encapsulated content, and an extension at one of the capsid vertices. Rotational invariants combine structural sensitivity with applicability to forward-scattering modeling and inverse problem solving, making them powerful tools for probing the structure and temporal evolution of nano- and bioparticles using an XFEL, particularly enhancing the fidelity of structural analysis at limited experimental resolution.

physics.bio-ph↗

arXiv2021

Angular structure factor of the hexatic-B liquid crystals: bridging theory and experiment

We report results from X-ray scattering studies of the angular structure factor of liquid crystal hexatic-B films. According to the sixfold rotational symmetry of the hexatic-B phase, its characteristic scattering splits into six reflections. The shape of the radial and angular cross-sections of these reflections and their temperature evolution are analyzed. We find that over a wide temperature range of the hexatic-B phase existence the angular profiles of the in-plane X-ray scattering are well fitted by the Voigt function, which is a convolution of the Gaussian and Lorentzian functions. This result is supported by the known theoretical considerations of the hexatic structure factor below the smectic-hexatic phase transition temperture. Similar predictions for the angular shape of the hexatic peak in the vicinity of the smectic-hexatic phase transition temperature follow from the multicritical scaling theory of the hexatic-B phase in three dimensions. We find that the specific shape of the hexatic structure factor can be explained by the interplay of two distinct contributions to the free energy of the system, a liquid-like density term and a coupling term between the bond-orientational order and short-range density fluctuations.

cond-mat.soft↗

arXiv2021

High spatial coherence and short pulse duration revealed by the Hanbury Brown and Twiss interferometry at the European XFEL

Second-order intensity interferometry was employed to study the spatial and temporal properties of the European X-ray Free-Electron Laser (EuXFEL). Measurements were performed at the soft X-ray SASE3 undulator beamline at a photon energy of 1.2 keV in the Self-Amplified Spontaneous Emission (SASE) mode. Two high-power regimes of the SASE3 undulator settings, i.e. linear and quadratic tapering at saturation, were studied in detail and compared with the linear gain regime. The statistical analysis showed an exceptionally high degree of spatial coherence up to 90% for the linear undulator tapering. Analysis of the measured data in spectral and spatial domains provided an average pulse duration of about 10 fs in our measurements. The obtained results will be valuable for the experiments requiring and exploiting short pulse duration and utilizing high coherence properties of the EuXFEL.

physics.optics↗

arXiv2020

An advanced workflow for single particle imaging with the limited data at an X-ray free-electron laser

An improved analysis for single particle imaging (SPI) experiments, using the limited data, is presented here. Results are based on a study of bacteriophage PR772 performed at the AMO instrument at the Linac Coherent Light Source (LCLS) as part of the SPI initiative. Existing methods were modified to cope with the shortcomings of the experimental data: inaccessibility of information from the half of the detector and small fraction of single hits. General SPI analysis workflow was upgraded with the expectation-maximization based classification of diffraction patterns and mode decomposition on the final virus structure determination step. The presented processing pipeline allowed us to determine the three-dimensional structure of the bacteriophage PR772 without symmetry constraints with a spatial resolution of 6.9 nm. The obtained resolution was limited by the scattering intensity during the experiment and the relatively small number of single hits.

physics.bio-ph↗

arXiv2019

Femtosecond laser produced periodic plasma in a colloidal crystal probed by XFEL radiation

With the rapid development of short-pulse intense laser sources, studies of matter under extreme irradiation conditions enter further unexplored regimes. In addition, an application of X-ray Free- Electron Lasers (XFELs), delivering intense femtosecond X-ray pulses allows to investigate sample evolution in IR pump - X-ray probe experiments with an unprecedented time resolution. Here we present the detailed study of periodic plasma created from the colloidal crystal. Both experimental data and theory modeling show that the periodicity in the sample survives to a large extent the extreme excitation and shock wave propagation inside the colloidal crystal. This feature enables probing the excited crystal, using the powerful Bragg peak analysis, in contrast to the conventional studies of dense plasma created from bulk samples for which probing with Bragg diffraction technique is not possible. X-ray diffraction measurements of excited colloidal crystals may then lead towards a better understanding of matter phase transitions under extreme irradiation conditions.

cond-mat.soft↗

arXiv2019

Angular x-ray cross-correlation analysis (AXCCA): Basic concepts and recent applications to soft matter and nanomaterials

Angular x-ray cross-correlation analysis (AXCCA) is a technique which allows quantitative measurement of the angular anisotropy of x-ray diffraction patterns and provides insights into the orientational order in the system under investigation. This method is based on the evaluation of the angular cross-correlation function of the scattered intensity distribution on a two-dimensional (2D) detector and further averaging over many diffraction patterns for enhancement of the anisotropic signal. Over the last decade, AXCCA was successfully used to study the anisotropy in various soft matter systems, such as solutions of anisometric particles, liquid crystals, colloidal crystals, superlattices composed by nanoparticles, etc. This review provides an introduction to the technique and gives a survey of the recent experimental work in which AXCCA in combination with micro- or nanofocused x-ray microscopy was used to study the orientational order in various soft matter systems.

cond-mat.soft↗

arXiv2019

Revealing Grain Boundaries and Defect Formation in Nanocrystal Superlattices by Nanodiffraction

X-ray nanodiffraction is applied to study the formation and correlation of domain boundaries in mesocrystalline superlattices of PbS nanocrystals with face-centered cubic structure. Each domain of the superlattice can be described with one of two mesocrystalline polymorphs with different orientational order. Close to a grain boundary, the lattice constant decreases and the superlattice undergoes an out-of-plane rotation, while the orientation of the nanocrystals with respect to the superlattice remains unchanged. These findings are explained with the release of stress on the expense of specific nanocrystal-substrate interactions. The fact that correlations between adjacent nanocrystals are found to survive the structural changes at most grain boundaries implies that the key to nanocrystal superlattices with macroscopic domain sizes are strengthened interactions with the substrate.

cond-mat.mtrl-sci↗

arXiv2018

Ultrafast Structural Dynamics of Photo-Reactions Revealed by Model-Independent X-ray Cross-Correlation Analysis

We applied angular X-ray Cross-Correlation analysis (XCCA) to scattering images from a femtosecond resolution LCLS X-ray free-electron laser (XFEL) pump-probe experiment with solvated PtPOP ([Pt$_2$(P$_2$O$_5$H$_2$)$_4$]$^{4-}$) metal complex molecules. The molecules were pumped with linear polarized laser pulses creating an excited state population with a preferred orientational (alignment) direction. Two time scales of $1.9\pm1.5$ ps and $46\pm10$ ps were revealed by model-independent XCCA, associated with an internal structural changes and rotational dephasing, respectively. Our studies illustrate the potential of XCCA to reveal hidden structural information in a model independent analysis of time evolution of solvated metal complex molecules.

physics.atm-clus↗

arXiv2018

Unravelling structural rearrangement of polymer colloidal crystals under dry sintering conditions

Structural rearrangement of polystyrene colloidal crystals under dry sintering conditions has been revealed by in situ grazing incidence X-ray scattering. Measured diffraction patterns were analysed using distorted wave Born approximation (DWBA) theory and the structural parameters of as-grown colloidal crystals of three different particle sizes were determined for in-plane and out-of-plane directions in a film. By analysing the temperature evolution of diffraction peak positions, integrated intensities, and widths the detailed scenario of structural rearrangement of crystalline domains at a nanoscale has been revealed, including thermal expansion, particle shape transformation and crystal amorphisation. Based on DWBA analysis we demonstrate that in the process of dry sintering the shape of colloidal particles in a crystal transforms from a sphere to a polyhedron. Our results deepen the understanding of thermal annealing of polymer colloidal crystals as an efficient route to the design of new nano-materials.

cond-mat.soft↗

arXiv2018

Evidence of a first-order smectic -- hexatic transition and its proximity to tricritical point in smectic films

Experimental and theoretical studies of a smectic-hexatic transition in freely suspended films of 54COOBC compound are presented. X-ray investigations revealed a discontinuous first-order transition into the hexatic phase. Moreover, the temperature region of two phase coexistence near the phase transition point diminishes with film thickness. The coexistence width dependence on film thickness was derived on the basis of the Landau mean-field theory in the vicinity of the tricritical point (TCP). Close to TCP the surface hexatic ordering penetrates anomalously deep into the film interior.

cond-mat.soft↗

arXiv2017

Quantifying Angular Correlations between the Atomic Lattice and Superlattice of Nanocrystals Assembled with Directional Linking

We show that the combination of X-ray scattering with a nanofocused beam and X-ray cross correlation analysis is an efficient means for the full structural characterization of mesocrystalline nanoparticle assemblies with a single experiment. We analyze several hundred diffraction patterns of individual sample locations, i.e. individual grains, to obtain a meaningful statistical distribution of the superlattice and atomic lattice ordering. Simultaneous small- and wide-angle X-ray scattering of the same sample location allows us to determine the structure and orientation of the superlattice as well as the angular correlation of the first two Bragg peaks of the atomic lattices, their orientation with respect to the superlattice, and the average orientational misfit due to local structural disorder. This experiment is particularly advantageous for synthetic mesocrystals made by the simultaneous self-assembly of colloidal nanocrystals and surface-functionalization with conductive ligands. While the structural characterization of such materials has been challenging so far, the present method now allows correlating mesocrystalline structure with optoelectronic properties.

cond-mat.mes-hall↗

arXiv2014

Local structure of semicrystalline P3HT films probed by nanofocused coherent x-rays

We present results of an x-ray study of structural properties of semicrystalline polymer films using nanofocused x-ray beam. We applied the x-ray cross-correlation analysis (XCCA) to scattering data from blends of poly(3-hexylthiophene) (P3HT) embedded with gold nanoparticles (AuNPs). Spatially resolved maps of orientational distribution of crystalline domains allow us to distinguish sample regions of predominant face-on morphology,with a continuous transition to edge-on morphology. The average size of crystalline domains was determined to be of the order of 10 nm. As compared to pristine P3HT film, the P3HT/AuNPs blend is characterized by substantial ordering of crystalline domains, which can be induced by Au nanoparticles. The inhomogeneous structure of the polymer film is clearly visualized on the spatially resolved nanoscale 2D maps obtained using XCCA. Our results suggest that the observed changes of the polymer matrix within crystalline regions can be attributed to nanoconfinement in the presence of gold nanoparticles.

cond-mat.soft↗