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Ruth Joy

Publications and source records attributed to Ruth Joy.

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Advancing Marine Bioacoustics with Deep Generative Models: A Hybrid Augmentation Strategy for Southern Resident Killer Whale Detection

Automated detection and classification of marine mammals vocalizations is critical for conservation and management efforts but is hindered by limited annotated datasets and the acoustic complexity of real-world marine environments. Data augmentation has proven to be an effective strategy to address this limitation by increasing dataset diversity and improving model generalization without requiring additional field data. However, most augmentation techniques used to date rely on effective but relatively simple transformations, leaving open the question of whether deep generative models can provide additional benefits. In this study, we evaluate the potential of deep generative for data augmentation in marine mammal call detection including: Variational Autoencoders, Generative Adversarial Networks, and Denoising Diffusion Probabilistic Models. Using Southern Resident Killer Whale (Orcinus orca) vocalizations from two long-term hydrophone deployments in the Salish Sea, we compare these approaches against traditional augmentation methods such as time-shifting and vocalization masking. While all generative approaches improved classification performance relative to the baseline, diffusion-based augmentation yielded the highest recall (0.87) and overall F1-score (0.75). A hybrid strategy combining generative-based synthesis with traditional methods achieved the best overall performance with an F1-score of 0.81. We hope this study encourages further exploration of deep generative models as complementary augmentation strategies to advance acoustic monitoring of threatened marine mammal populations.

cs.SD

Estimating animal utilization distributions from multiple data types: a joint spatio-temporal point process framework

Models of the spatial distribution of animals provide useful tools to help ecologists quantify species-environment relationships, and they are increasingly being used to help determine the impacts of climate and habitat changes on species. While high-quality survey-style data with known effort are sometimes available, often researchers have multiple datasets of varying quality and type. In particular, collections of sightings made by citizen scientists are becoming increasingly common, with no information typically provided on their observer effort. Many standard modelling approaches ignore observer effort completely, which can severely bias estimates of an animal's distribution. Combining sightings data from observers who followed different protocols is challenging. Any differences in observer skill, spatial effort, and the detectability of the animals across space all need to be accounted for. To achieve this, we build upon the recent advancements made in integrative species distribution models and present a novel marked spatio-temporal point process framework for estimating the utilization distribution (UD) of the individuals of a highly mobile species. We show that in certain settings, we can also use the framework to combine the UDs from the sampled individuals to estimate the species' distribution. We combine the empirical results from a simulation study with the implications outlined in a causal directed acyclic graph to identify the necessary assumptions required for our framework to control for observer effort when it is unknown. We then apply our framework to combine multiple datasets collected on the endangered Southern Resident Killer Whales, to estimate their monthly effort-corrected space-use.

stat.ME