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Ruud J. G. van Sloun

Publications and source records attributed to Ruud J. G. van Sloun.

At least 19 recordsLinked to original sources

Ultrasound Operator Guidance Using World Modeling and Retrieval Based Action Planning

Ultrasound is widely used, but acquisition quality is heavily dependent on the operator's knowledge and expertise. With demand for examinations outpacing the supply of trained sonographers, operator-guidance systems aim to close this gap by instructing a less trained user how to move the probe toward a target view. In this paper, we propose a retrieval-induced latent transition model for ultrasound acquisition dynamics, formulating ultrasound operator guidance as multi-step planning and retrieval in a world model. Using a V-JEPA 2.1 backbone, observations are first encoded into a latent space where anatomically related views lie close together. We then retrieve similar views from a reference database containing encoded latent states and corresponding probe positions and orientations. Rather than learning a parametric transition function, we directly use physically executed transitions from the database to establish our nonparametric, retrieval-induced transition model that supports receding-horizon planning. At deployment, guidance is generated from the live ultrasound image feed alone, without any probe tracking hardware. Applied to carotid ultrasound, the proposed planner reaches the target view in 86% of retrospective closed-loop episodes, versus 52% and 43% for representative baselines, outperforming both on every target view, including the challenging longitudinal internal and external carotid artery views. A prospective feasibility study on unseen volunteers, run in real time on a CPU using distillation, reaches 83% target-view reachability. Because planning is driven by proximity to any encodable goal latent, the same world model can navigate back to any previously acquired, patient-specific frame, supporting reproducible longitudinal imaging for e.g. perioperative or follow-up monitoring.

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Physics-Informed Sylvester Normalizing Flows for Bayesian Inference in Magnetic Resonance Spectroscopy

Magnetic resonance spectroscopy (MRS) is a non-invasive technique to measure the metabolic composition of tissues, offering valuable insights into neurological disorders, tumor detection, and other metabolic dysfunctions. However, accurate metabolite quantification is hindered by challenges such as spectral overlap, low signal-to-noise ratio, and various artifacts. Traditional methods like linear-combination modeling are susceptible to ambiguities and commonly only provide a theoretical lower bound on estimation accuracy in the form of the Cramér-Rao bound. This work introduces a Bayesian inference framework using Sylvester normalizing flows (SNFs) to approximate posterior distributions over metabolite concentrations, enhancing quantification reliability. A physics-based decoder incorporates prior knowledge of MRS signal formation, ensuring realistic distribution representations. We validate the method on simulated 7T proton MRS data, demonstrating accurate metabolite quantification, well-calibrated uncertainties, and insights into parameter correlations and multi-modal distributions.

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Learning Array Signal Topologies as Conditional Neural Manifolds

Subspace methods such as multiple signal classification (MUSIC) achieve super-resolution direction of arrival (DoA) estimation by exploiting the orthogonality between the array manifold and the noise subspace of the measurements. Their accuracy therefore depends on the assumed manifold and degrades under model mismatch, while parameters not identifiable from the spatial manifold cannot be recovered. In this work, we propose the conditional neural manifold (CNM), which replaces the fixed manifold with an observation-conditioned mapping from source parameters to steering vectors. An encoder maps the snapshots to a latent scene representation that conditions a zero-initialized neural field over the parameter space. The manifold is learned without steering-vector supervision by shaping the resulting MUSIC landscape. Since the correction acts on the manifold rather than on the estimator, it can be used by other manifold-based methods without modification. The CNM restores resolution under array imperfections, colored noise, correlated sources, and near-field propagation, and resolves the angle-frequency ambiguity inherent to the nominal spatial manifold.

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Patient-Adaptive Echocardiography using Cognitive Ultrasound

Focused transmits are the most commonly used transmit strategy for echocardiograms, but suffer from relatively low frame rates, and in 3D, even lower volume rates. Fast imaging based on unfocused transmits has disadvantages such as motion decorrelation and limited harmonic imaging capabilities. This work introduces a patient-adaptive focused transmit and receive scheme that has the ability to drastically reduce the number of transmits needed to produce a high-quality ultrasound image. The method relies on posterior sampling with a temporal diffusion model to perceive and reconstruct the anatomy based on partial observations, while subsequently acquiring the most informative transmits. This cognitive ultrasound modality outperforms random and equispaced subsampling in terms of distortion and perceptual metrics on the 2D EchoNet-Dynamic dataset and a 3D Philips dataset, where we actively select focused elevation planes. Furthermore, our method improves generalized contrast-to-noise ratio from 0.83 to 0.89 compared to the same number of diverging wave transmits on six in-house echocardiograms. Additionally, we can segment the left ventricle, with on average 0.91 Dice-Sørensen coefficient, through simulating using 2 out of 112 lines. Finally, our method can be run in real-time on GPU accelerators from 2023, increasing the maximum achievable frame-rate from 46 Hz to 58 Hz. The code is publicly available at https://tue-bmd.github.io/casl/.

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zea: A Toolbox for Cognitive Ultrasound Imaging

We present zea (pronounced ze-yah), a Python package for cognitive ultrasound imaging that offers a flexible, modular, and differentiable pipeline for ultrasound data processing. Additionally, it includes a collection of pre-defined models for ultrasound image and signal processing. The toolbox is designed to be easy to use, with a high-level interface that enables users to define custom ultrasound reconstruction pipelines and integrate deep learning models seamlessly. Built on top of Keras 3, it supports all three major deep learning backends: TensorFlow, PyTorch, and JAX, making it straightforward to incorporate custom ultrasound processing pipelines into machine learning workflows. Documentation is available at https://zea.readthedocs.io/.

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Nuclear Diffusion Models for Low-Rank Background Suppression in Videos

Video sequences often contain structured noise and background artifacts that obscure dynamic content, posing challenges for accurate analysis and restoration. Robust principal component methods address this by decomposing data into low-rank and sparse components. Still, the sparsity assumption often fails to capture the rich variability present in real video data. To overcome this limitation, a hybrid framework that integrates low-rank temporal modeling with diffusion posterior sampling is proposed. The proposed method, Nuclear Diffusion, is evaluated on a real-world medical imaging problem, namely cardiac ultrasound dehazing, and demonstrates improved dehazing performance compared to traditional RPCA concerning contrast enhancement (gCNR) and signal preservation (KS statistic). These results highlight the potential of combining model-based temporal models with deep generative priors for high-fidelity video restoration.

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Task-Based Adaptive Transmit Beamforming for Efficient Ultrasound Quantification

Wireless and wearable ultrasound devices promise to enable continuous ultrasound monitoring, but power consumption and data throughput remain critical challenges. Reducing the number of transmit events per second directly impacts both. We propose a task-based adaptive transmit beamforming method, formulated as a Bayesian active perception problem, that adaptively chooses where to scan in order to gain information about downstream quantitative measurements, avoiding redundant transmit events. Our proposed Task-Based Information Gain (TBIG) strategy applies to any differentiable downstream task function. When applied to recovering ventricular dimensions from echocardiograms, TBIG recovers accurate results using fewer than 2% of scan lines typically used, showing potential for large reductions in the power usage and data rates necessary for monitoring. Code is available at https://github.com/tue-bmd/task-based-ulsa.

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Iterative Amortized Hierarchical VAE

In this paper we propose the Iterative Amortized Hierarchical Variational Autoencoder (IA-HVAE), which expands on amortized inference with a hybrid scheme containing an initial amortized guess and iterative refinement with decoder gradients. We achieve this by creating a linearly separable decoder in a transform domain (e.g. Fourier space), enabling real-time applications with very high model depths. The architectural change leads to a 35x speed-up for iterative inference with respect to the traditional HVAE. We show that our hybrid approach outperforms fully amortized and fully iterative equivalents in accuracy and speed respectively. Moreover, the IAHVAE shows improved reconstruction quality over a vanilla HVAE in inverse problems such as deblurring and denoising.

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High Volume Rate 3D Ultrasound Reconstruction with Diffusion Models

Three-dimensional ultrasound enables real-time volumetric visualization of anatomical structures. Unlike traditional 2D ultrasound, 3D imaging reduces reliance on precise probe orientation, potentially making ultrasound more accessible to clinicians with varying levels of experience and improving automated measurements and post-exam analysis. However, achieving both high volume rates and high image quality remains a significant challenge. While 3D diverging waves can provide high volume rates, they suffer from limited tissue harmonic generation and increased multipath effects, which degrade image quality. One compromise is to retain focus in elevation while leveraging unfocused diverging waves in the lateral direction to reduce the number of transmissions per elevation plane. Reaching the volume rates achieved by full 3D diverging waves, however, requires dramatically undersampling the number of elevation planes. Subsequently, to render the full volume, simple interpolation techniques are applied. This paper introduces a novel approach to 3D ultrasound reconstruction from a reduced set of elevation planes by employing diffusion models (DMs) to achieve increased spatial and temporal resolution. We compare both traditional and supervised deep learning-based interpolation methods on a 3D cardiac ultrasound dataset. Our results show that DM-based reconstruction consistently outperforms the baselines in image quality and downstream task performance. Additionally, we accelerate inference by leveraging the temporal consistency inherent to ultrasound sequences. Finally, we explore the robustness of the proposed method by exploiting the probabilistic nature of diffusion posterior sampling to quantify reconstruction uncertainty and demonstrate improved recall on out-of-distribution data with synthetic anomalies under strong subsampling.

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Anomalous Change Point Detection Using Probabilistic Predictive Coding

Change point detection (CPD) and anomaly detection (AD) are essential techniques in various fields to identify abrupt changes or abnormal data instances. However, existing methods are often constrained to univariate data, face scalability challenges with large datasets due to computational demands, and experience reduced performance with high-dimensional or intricate data, as well as hidden anomalies. Furthermore, they often lack interpretability and adaptability to domain-specific knowledge, which limits their versatility across different fields. In this work, we propose a deep learning-based CPD/AD method called Probabilistic Predictive Coding (PPC) that jointly learns to encode sequential data to low-dimensional latent space representations and to predict the subsequent data representations as well as the corresponding prediction uncertainties. The model parameters are optimized with maximum likelihood estimation by comparing these predictions with the true encodings. At the time of application, the true and predicted encodings are used to determine the probability of conformance, an interpretable and meaningful anomaly score. Furthermore, our approach has linear time complexity, scalability issues are prevented, and the method can easily be adjusted to a wide range of data types and intricate applications. We demonstrate the effectiveness and adaptability of our proposed method across synthetic time series experiments, image data, and real-world magnetic resonance spectroscopic imaging data.

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Strategies to Minimize Out-of-Distribution Effects in Data-Driven MRS Quantification

This study systematically compared data-driven and model-based strategies for metabolite quantification in magnetic resonance spectroscopy (MRS), focusing on resilience to out-of-distribution (OoD) effects and the balance between accuracy, robustness, and generalizability. A neural network designed for MRS quantification was trained using three distinct strategies: supervised regression, self-supervised learning, and test-time adaptation. These were compared against model-based fitting tools. Experiments combined large-scale simulated data, designed to probe metabolite concentration extrapolation and signal variability, with 1H single-voxel 7T in-vivo human brain spectra. In simulations, supervised learning achieved high accuracy for spectra similar to those in the training distribution, but showed marked degradation when extrapolated beyond the training distribution. Test-time adaptation proved more resilient to OoD effects, while self-supervised learning achieved intermediate performance. In-vivo experiments showed larger variance across the methods (data-driven and model-based) due to domain shift. Across all strategies, overlapping metabolites and baseline variability remained persistent challenges. While strong performance can be achieved by data-driven methods for MRS metabolite quantification, their reliability is contingent on careful consideration of the training distribution and potential OoD effects. When such conditions in the target distribution cannot be anticipated, test-time adaptation strategies ensure consistency between the quantification, the data, and the model, enabling reliable data-driven MRS pipelines.

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SVD-NO: Learning PDE Solution Operators with SVD Integral Kernels

Neural operators have emerged as a promising paradigm for learning solution operators of partial differential equa- tions (PDEs) directly from data. Existing methods, such as those based on Fourier or graph techniques, make strong as- sumptions about the structure of the kernel integral opera- tor, assumptions which may limit expressivity. We present SVD-NO, a neural operator that explicitly parameterizes the kernel by its singular-value decomposition (SVD) and then carries out the integral directly in the low-rank basis. Two lightweight networks learn the left and right singular func- tions, a diagonal parameter matrix learns the singular values, and a Gram-matrix regularizer enforces orthonormality. As SVD-NO approximates the full kernel, it obtains a high de- gree of expressivity. Furthermore, due to its low-rank struc- ture the computational complexity of applying the operator remains reasonable, leading to a practical system. In exten- sive evaluations on five diverse benchmark equations, SVD- NO achieves a new state of the art. In particular, SVD-NO provides greater performance gains on PDEs whose solutions are highly spatially variable. The code of this work is publicly available at https://github.com/2noamk/SVDNO.git.

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Semantic Diffusion Posterior Sampling for Cardiac Ultrasound Dehazing

Echocardiography plays a central role in cardiac imaging, offering dynamic views of the heart that are essential for diagnosis and monitoring. However, image quality can be significantly degraded by haze arising from multipath reverberations, particularly in difficult-to-image patients. In this work, we propose a semantic-guided, diffusion-based dehazing algorithm developed for the MICCAI Dehazing Echocardiography Challenge (DehazingEcho2025). Our method integrates a pixel-wise noise model, derived from semantic segmentation of hazy inputs into a diffusion posterior sampling framework guided by a generative prior trained on clean ultrasound data. Quantitative evaluation on the challenge dataset demonstrates strong performance across contrast and fidelity metrics. Code for the submitted algorithm is available at https://github.com/tristan-deep/semantic-diffusion-echo-dehazing.

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EOTNet: Deep Memory Aided Bayesian Filter for Extended Object Tracking

Extended object tracking methods based on random matrices, founded on Bayesian filters, have been able to achieve efficient recursive processes while jointly estimating the kinematic states and extension of the targets. Existing random matrix approaches typically assume that the evolution of state and extension follows a first-order Markov process, where the current estimate of the target depends solely on the previous moment. However, in real-world scenarios, this assumption fails because the evolution of states and extension is usually non-Markovian. In this paper, we introduce a novel extended object tracking method: a Bayesian recursive neural network assisted by deep memory. Initially, we propose an equivalent model under a non-Markovian assumption and derive the implementation of its Bayesian filtering framework. Thereafter, Gaussian approximation and moment matching are employed to derive the analytical solution for the proposed Bayesian filtering framework. Finally, based on the closed-form solution, we design an end-to-end trainable Bayesian recursive neural network for extended object tracking. Experiment results on simulated and real-world datasets show that the proposed methods outperforms traditional extended object tracking methods and state-of-the-art deep learning approaches.

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A Deep Generative Model for Five-Class Sleep Staging with Arbitrary Sensor Input

Gold-standard sleep scoring is based on epoch-based assignment of sleep stages based on a combination of EEG, EOG and EMG signals. However, a polysomnographic recording consists of many other signals that could be used for sleep staging, including cardio-respiratory modalities. Leveraging this signal variety would offer important advantages, for example increasing reliability, resilience to signal loss, and application to long-term non-obtrusive recordings. We developed a deep generative model for automatic sleep staging from a plurality of sensors and any -- arbitrary -- combination thereof. We trained a score-based diffusion model using a dataset of 1947 expert-labelled overnight recordings with 36 different signals, and achieved zero-shot inference on any sensor set by leveraging a novel Bayesian factorization of the score function across the sensors. On single-channel EEG, the model reaches the performance limit in terms of polysomnography inter-rater agreement (5-class accuracy 85.6%, Cohen's kappa 0.791). Moreover, the method offers full flexibility to use any sensor set, for example finger photoplethysmography, nasal flow and thoracic respiratory movements, (5-class accuracy 79.0%, Cohen's kappa of 0.697), or even derivations very unconventional for sleep staging, such as tibialis and sternocleidomastoid EMG (5-class accuracy 71.0%, kappa 0.575). Additionally, we propose a novel interpretability metric in terms of information gain per sensor and show this is linearly correlated with classification performance. Finally, our model allows for post-hoc addition of entirely new sensor modalities by merely training a score estimator on the novel input instead of having to retrain from scratch on all inputs.

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Active Diffusion Subsampling

Subsampling is commonly used to mitigate costs associated with data acquisition, such as time or energy requirements, motivating the development of algorithms for estimating the fully-sampled signal of interest $x$ from partially observed measurements $y$. In maximum entropy sampling, one selects measurement locations that are expected to have the highest entropy, so as to minimize uncertainty about $x$. This approach relies on an accurate model of the posterior distribution over future measurements, given the measurements observed so far. Recently, diffusion models have been shown to produce high-quality posterior samples of high-dimensional signals using guided diffusion. In this work, we propose Active Diffusion Subsampling (ADS), a method for designing intelligent subsampling masks using guided diffusion in which the model tracks a distribution of beliefs over the true state of $x$ throughout the reverse diffusion process, progressively decreasing its uncertainty by actively choosing to acquire measurements with maximum expected entropy, ultimately producing the posterior distribution $p(x \mid y)$. ADS can be applied using pre-trained diffusion models for any subsampling rate, and does not require task-specific retraining - just the specification of a measurement model. Furthermore, the maximum entropy sampling policy employed by ADS is interpretable, enhancing transparency relative to existing methods using black-box policies. Code is available at https://active-diffusion-subsampling.github.io/.

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Deep Generative Models for Bayesian Inference on High-Rate Sensor Data: Applications in Automotive Radar and Medical Imaging

Deep generative models have been studied and developed primarily in the context of natural images and computer vision. This has spurred the development of (Bayesian) methods that use these generative models for inverse problems in image restoration, such as denoising, inpainting, and super-resolution. In recent years, generative modeling for Bayesian inference on sensory data has also gained traction. Nevertheless, the direct application of generative modeling techniques initially designed for natural images on raw sensory data is not straightforward, requiring solutions that deal with high dynamic range signals acquired from multiple sensors or arrays of sensors that interfere with each other, and that typically acquire data at a very high rate. Moreover, the exact physical data-generating process is often complex or unknown. As a consequence, approximate models are used, resulting in discrepancies between model predictions and the observations that are non-Gaussian, in turn complicating the Bayesian inverse problem. Finally, sensor data is often used in real-time processing or decision-making systems, imposing stringent requirements on, e.g., latency and throughput. In this paper, we will discuss some of these challenges and offer approaches to address them, all in the context of high-rate real-time sensing applications in automotive radar and medical imaging.

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Removing Structured Noise with Diffusion Models

Solving ill-posed inverse problems requires careful formulation of prior beliefs over the signals of interest and an accurate description of their manifestation into noisy measurements. Handcrafted signal priors based on e.g. sparsity are increasingly replaced by data-driven deep generative models, and several groups have recently shown that state-of-the-art score-based diffusion models yield particularly strong performance and flexibility. In this paper, we show that the powerful paradigm of posterior sampling with diffusion models can be extended to include rich, structured, noise models. To that end, we propose a joint conditional reverse diffusion process with learned scores for the noise and signal-generating distribution. We demonstrate strong performance gains across various inverse problems with structured noise, outperforming competitive baselines that use normalizing flows and adversarial networks. This opens up new opportunities and relevant practical applications of diffusion modeling for inverse problems in the context of non-Gaussian measurement models.

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