arXiv subjects

Ryan A. Loomis

Publications and source records attributed to Ryan A. Loomis.

At least 91 records · Page 5Linked to original sources

arXiv2020

Interstellar Detection of the Highly Polar Five-Membered Ring Cyanocyclopentadiene

Much like six-membered rings, five-membered rings are ubiquitous in organic chemistry, frequently serving as the building blocks for larger molecules, including many of biochemical importance. From a combination of laboratory rotational spectroscopy and a sensitive spectral line survey in the radio band toward the starless cloud core TMC-1, we report the astronomical detection of 1-cyano-1,3-cyclopentadiene, $c$-C$_5$H$_5$CN}, a highly polar, cyano derivative of cyclopentadiene, $c$-C$_5$H$_6$. The derived abundance of $c$-C$_5$H$_5$CN} is far greater than predicted from astrochemical models which well reproduce the abundance of many carbon chains. This finding implies either an important production mechanism or a large reservoir of aromatic material may need to be considered. The apparent absence of its closely-related isomer, 2-cyano-1,3-cyclopentadiene, may arise from its lower stability or be indicative of a more selective pathway for formation of the 1-cyano isomer, perhaps one starting from acyclic precursors. The absence of N-heterocycles such as pyrrole and pyridine is discussed in light of the astronomical finding.

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arXiv2020

Ubiquitous Aromatic Carbon Chemistry at the Earliest Stages of Star Formation

Benzonitrile ($c$-C$_6$H$_5$CN), a polar proxy for benzene ($c$-C$_6$H$_6$}), has the potential to serve as a highly convenient radio probe for aromatic chemistry, provided this ring can be found in other astronomical sources beyond the molecule-rich prestellar cloud TMC-1 where it was first reported by McGuire et al. in 2018. Here we present radio astronomical evidence of benzonitrile in four additional pre-stellar, and possibly protostellar, sources: Serpens 1A, Serpens 1B, Serpens 2, and MC27/L1521F. These detections establish benzonitrile is not unique to TMC-1; rather aromatic chemistry appears to be widespread throughout the earliest stages of star formation, likely persisting at least to the initial formation of a protostar. The abundance of benzonitrile far exceeds predictions from models which well reproduce the abundances of carbon chains, such as HC$_7$N, a cyanpolyyne with the same heavy atoms, indicating the chemistry responsible for planar carbon structures (as opposed to linear ones) in primordial sources is favorable but not well understood. The abundance of benzonitrile relative to carbon-chain molecules displays sizable variations between sources within the Taurus and Serpens clouds, implying the importance of physical conditions and initial elemental reservoirs of the clouds themselves.

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arXiv2020

An Investigation of Spectral Line Stacking Techniques and Application to the Detection of HC$_{11}$N

As the inventory of interstellar molecules continues to grow, the gulf between small species, whose individual rotational lines can be observed with radio telescopes, and large ones, such as polycyclic aromatic hydrocarbons (PAHs) best studied in bulk via infrared and optical observations, is slowly being bridged. Understanding the connection between these two molecular reservoirs is critical to understanding the interstellar carbon cycle, but will require pushing the boundaries of how far we can probe molecular complexity while still retaining observational specificity. Toward this end, we present a method for detecting and characterizing new molecular species in single-dish observations toward sources with sparse line spectra. We have applied this method to data from the ongoing GOTHAM (GBT Observations of TMC-1: Hunting Aromatic Molecules) Green Bank Telescope (GBT) large program, discovering six new interstellar species. In this paper we highlight the detection of HC$_{11}$N, the largest cyanopolyyne in the interstellar medium.

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arXiv2020

Visualizing the Kinematics of Planet Formation

A stunning range of substructures in the dust of protoplanetary disks is routinely observed across a range of wavelengths. These gaps, rings and spirals are highly indicative of a population of unseen planets, hinting at the possibility of current observational facilities being able to capture planet-formation in action. Over the last decade, our understanding of the influence of a young planet on the dynamical structure of its parental disk has progressed significantly, revealing a host of potentially observable features which would betray the presence of a deeply embedded planet. In concert, recent observations have shown that subtle perturbations in the kinematic structure of protoplanetary disks are found in multiple sources, potentially the characteristic disturbances associated with embedded planets. In this work, we review the theoretical background of planet-disk interactions, focusing on the kinematical features, and the current methodologies used to observe these interactions in spatially and spectrally resolved observations. We discuss the potential pit falls of such kinematical detections of planets, providing best-practices for imaging and analysing interferometric data, along with a set of criteria to use as a benchmark for any claimed detection of embedded planets. We finish with a discussion on the current state of simulations in regard to planet-disk interactions, highlighting areas of particular interest and future directions which will provide the most significant impact in our search for embedded planets. This work is the culmination of the 'Visualizing the Kinematics of Planet Formation' workshop, held in October 2019 at the Center for Computational Astrophysics at the Flatiron Institute in New York City.

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arXiv2020

Detection of Interstellar HC$_4$NC and an Investigation of Isocyanopolyyne Chemistry under TMC-1 Conditions

We report an astronomical detection of HC$_4$NC for the first time in the interstellar medium with the Green Bank Telescope toward the TMC-1 molecular cloud with a minimum significance of $10.5 σ$. The total column density and excitation temperature of HC$_4$NC are determined to be $3.29^{+8.60}_{-1.20}\times 10^{11}$ cm$^{-2}$ and $6.7^{+0.3}_{-0.3}$ K, respectively, using the MCMC analysis. In addition to HC$_4$NC, HCCNC is distinctly detected whereas no clear detection of HC$_6$NC is made. We propose that the dissociative recombination of the protonated cyanopolyyne, HC$_5$NH$^+$, and the protonated isocyanopolyyne, HC$_4$NCH$^+$, are the main formation mechanisms for HC$_4$NC while its destruction is dominated by reactions with simple ions and atomic carbon. With the proposed chemical networks, the observed abundances of HC$_4$NC and HCCNC are reproduced satisfactorily.

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arXiv2020

Early Science from GOTHAM: Project Overview, Methods, and the Detection of Interstellar Propargyl Cyanide (HCCCH$_2$CN) in TMC-1

We present an overview of the GOTHAM (GBT Observations of TMC-1: Hunting Aromatic Molecules) Large Program on the Green Bank Telescope. This and a related program were launched to explore the depth and breadth of aromatic chemistry in the interstellar medium at the earliest stages of star formation, following our earlier detection of benzonitrile ($c$-C$_6$H$_5$CN) in TMC-1. In this work, details of the observations, use of archival data, and data reduction strategies are provided. Using these observations, the interstellar detection of propargyl cyanide (HCCCH$_2$CN) is described, as well as the accompanying laboratory spectroscopy. We discuss these results, and the survey project as a whole, in the context of investigating a previously unexplored reservoir of complex, gas-phase molecules in pre-stellar sources. A series of companion papers describe other new astronomical detections and analyses.

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arXiv2020

An unbiased ALMA spectral survey of the LkCa 15 and MWC 480 protoplanetary disks

The volatile contents of protoplanetary disks both set the potential for planetary chemistry and provide valuable probes of defining disk system characteristics such as stellar mass, gas mass, ionization, and temperature structure. Current disk molecular inventories are fragmented, however, giving an incomplete picture: unbiased spectral line surveys are needed to assess the volatile content. We present here an overview of such a survey of the protoplanetary disks around the Herbig Ae star MWC 480 and the T Tauri star LkCa 15 in ALMA Band 7, spanning $\sim$36 GHz from 275--317 GHz and representing an order of magnitude increase in sensitivity over previous single-dish surveys. We detect 14 molecular species (including isotopologues), with 5 species (C$^{34}$S, $^{13}$CS, H$_{2}$CS, DNC, and C$_2$D) detected for the first time in protoplanetary disks. Significant differences are observed in the molecular inventories of MWC~480 and LkCa~15, and we discuss how these results may be interpreted in light of the different physical conditions of these two disk systems.

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arXiv2020

An ALMA Survey of H$_2$CO in Protoplanetary Disks

H$_2$CO is one of the most abundant organic molecules in protoplanetary disks and can serve as a precursor to more complex organic chemistry. We present an ALMA survey of H$_2$CO towards 15 disks covering a range of stellar spectral types, stellar ages, and dust continuum morphologies. H$_2$CO is detected towards 13 disks and tentatively detected towards a 14th. We find both centrally-peaked and centrally-depressed emission morphologies, and half of the disks show ring-like structures at or beyond expected CO snowline locations. Together these morphologies suggest that H$_2$CO in disks is commonly produced through both gas-phase and CO-ice-regulated grain-surface chemistry. We extract disk-averaged and azimuthally-averaged H$_2$CO excitation temperatures and column densities for four disks with multiple H$_2$CO line detections. The temperatures are between 20-50K, with the exception of colder temperatures in the DM Tau disk. These temperatures suggest that H$_2$CO emission in disks is generally emerging from the warm molecular layer, with some contributions from the colder midplane. Applying the same H$_2$CO excitation temperatures to all disks in the survey, we find that H$_2$CO column densities span almost three orders of magnitude ($\sim 5 \times 10^{11} - 5 \times 10^{14} \mathrm{cm}^{-2}$). The column densities appear uncorrelated with disk size and stellar age, but Herbig Ae disks may have less H$_2$CO compared to T Tauri disks, possibly because of less CO freeze-out. More H$_2$CO observations towards Herbig Ae disks are needed to confirm this tentative trend, and to better constrain under which disk conditions H$_2$CO and other oxygen-bearing organics efficiently form during planet formation.

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arXiv2019

A survey of C2H, HCN, and C18O in protoplanetary disks

Molecular lines observed towards protoplanetary disks carry information about physical and chemical processes associated with planet formation. We present ALMA Band 6 observations of C2H, HCN, and C18O in a sample of 14 disks spanning a range of ages, stellar luminosities, and stellar masses. Using C2H and HCN hyperfine structure fitting and HCN/H13CN isotopologue analysis, we extract optical depth, excitation temperature, and column density radial profiles for a subset of disks. C2H is marginally optically thick (τ~1-5) and HCN is quite optically thick (τ~ 5-10) in the inner 200 AU. The extracted temperatures of both molecules are low (10-30K), indicative of either sub-thermal emission from the warm disk atmosphere or substantial beam dilution due to chemical substructure. We explore the origins of C2H morphological diversity in our sample using a series of toy disk models, and find that disk-dependent overlap between regions with high UV fluxes and high atomic carbon abundances can explain a wide range of C2H emission features (e.g. compact vs. extended and ringed vs. ringless emission). We explore the chemical relationship between C2H, HCN, and C18O and find a positive correlation between C2H and HCN fluxes, but no relationship between C2H or HCN with C18O fluxes. We also see no evidence that C2H and HCN are enhanced with disk age. C2H and HCN seem to share a common driver, however more work remains to elucidate the chemical relationship between these molecules and the underlying evolution of C, N, and O chemistries in disks.

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arXiv2018

Science with an ngVLA: Observing the Effects of Chemistry on Exoplanets and Planet Formation

One of the primary mechanisms for inferring the dynamical history of planets in our Solar System and in exoplanetary systems is through observation of elemental ratios (i.e. C/O). The ability to effectively use these observations relies critically on a robust understanding of the chemistry and evolutionary history of the observed abundances. Significant efforts have been devoted to this area from within astrochemistry circles, and these efforts should be supported going forward by the larger exoplanetary science community. In addition, the construction of a next-generation radio interferometer will be required to test many of these predictive models in situ, while simultaneously providing the resolution necessary to pinpoint the location of planets in formation.

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arXiv2018

Constraining Gas-Phase Carbon, Oxygen, and Nitrogen in the IM Lup Protoplanetary Disk

We present new constraints on gas-phase C, N, and O abundances in the molecular layer of the IM Lup protoplanetary disk. Building on previous physical and chemical modeling of this disk, we use new ALMA observations of C$_2$H to constrain the C/O ratio in the molecular layer to be $\sim0.8$, i.e., higher than the solar value of $\sim0.54$. We use archival ALMA observations of HCN and H$^{13}$CN to show that no depletion of N is required (assuming an interstellar abundance of $7.5\times10^{-5}$ per H). These results suggest that an appreciable fraction of O is sequestered in water ice in large grains settled to the disk mid-plane. Similarly, a fraction of the available C is locked up in less volatile molecules. By contrast, N remains largely unprocessed, likely as N$_2$. This pattern of depletion suggests the presence of true abundance variations in this disk, and not a simple overall depletion of gas mass. If these results hold more generally, then combined CO, C$_2$H, and HCN observations of disks may provide a promising path for constraining gas-phase C/O and N/O during planet-formation. Together, these tracers offer the opportunity to link the volatile compositions of disks to the atmospheres of planets formed from them.

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arXiv2018

The Distribution and Excitation of CH$_3$CN in a Solar Nebula Analog

Cometary studies suggest that the organic composition of the early Solar Nebula was rich in complex nitrile species such a CH$_3$CN. Recent ALMA detections in protoplanetary disks suggest that these species may be common during planet and comet formation, but connecting gas phase measurements to cometary abundances first requires constraints on formation chemistry and distributions of these species. We present here the detection of seven spatially resolved transitions of CH$_3$CN in the protoplanetary disk around the T-Tauri star TW Hya. Using a rotational diagram analysis we find a disk-averaged column density of N$_T$=1.45$^{+0.19}_{-0.15}\times10^{12}$ cm$^{-2}$ and a rotational temperature of T$_{rot}$=32.7$^{+3.9}_{-3.4}$ K. A radially resolved rotational diagram shows the rotational temperature to be constant across the disk, suggesting that the CH$_3$CN emission originates from a layer at z/r$\sim$0.3. Through comparison of the observations with predictions from a disk chemistry model, we find that grain-surface reactions likely dominate CH$_3$CN formation and that in situ disk chemistry is sufficient to explain the observed CH$_3$CN column density profile without invoking inheritance from the protostellar phase. However, the same model fails to reproduce a Solar System cometary abundance of CH$_3$CN relative to H$_2$O in the midplane, suggesting that either vigorous vertical mixing or some degree of inheritance from interstellar ices occurred in the Solar Nebula.

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arXiv2018

Detecting Weak Spectral Lines in Interferometric Data through Matched Filtering

Modern radio interferometers enable observations of spectral lines with unprecedented spatial resolution and sensitivity. In spite of these technical advances, many lines of interest are still at best weakly detected and therefore necessitate detection and analysis techniques specialized for the low signal-to-noise ratio (SNR) regime. Matched filters can leverage knowledge of the source structure and kinematics to increase sensitivity of spectral line observations. Application of the filter in the native Fourier domain improves SNR while simultaneously avoiding the computational cost and ambiguities associated with imaging, making matched filtering a fast and robust method for weak spectral line detection. We demonstrate how an approximate matched filter can be constructed from a previously observed line or from a model of the source, and we show how this filter can be used to robustly infer a detection significance for weak spectral lines. When applied to ALMA Cycle 2 observations of CH3OH in the protoplanetary disk around TW Hya, the technique yields a ~53% SNR boost over aperture-based spectral extraction methods, and we show that an even higher boost will be achieved for observations at higher spatial resolution. A Python-based open-source implementation of this technique is available under the MIT license at https://github.com/AstroChem/VISIBLE.

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arXiv2018

A Survey of CH3CN and HC3N in Protoplanetary Disks

The organic content of protoplanetary disks sets the initial compositions of planets and comets, thereby influencing subsequent chemistry that is possible in nascent planetary systems. We present observations of the complex nitrile-bearing species CH3CN and HC3N towards the disks around the T Tauri stars AS 209, IM Lup, LkCa 15, and V4046 Sgr as well as the Herbig Ae stars MWC 480 and HD 163296. HC3N is detected towards all disks except IM Lup, and CH3CN is detected towards V4046 Sgr, MWC 480, and HD 163296. Rotational temperatures derived for disks with multiple detected lines range from 29-73K, indicating emission from the temperate molecular layer of the disk. V4046 Sgr and MWC 480 radial abundance profiles are constrained using a parametric model; the gas-phase CH3CN and HC3N abundances with respect to HCN are a few to tens of percent in the inner 100 AU of the disk, signifying a rich nitrile chemistry at planet- and comet-forming disk radii. We find consistent relative abundances of CH3CN, HC3N, and HCN between our disk sample, protostellar envelopes, and solar system comets; this is suggestive of a robust nitrile chemistry with similar outcomes under a wide range of physical conditions.

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arXiv2017

Sulphur monoxide exposes a potential molecular disk wind from the planet-hosting disk around HD100546

Sulphur-bearing volatiles are observed to be significantly depleted in interstellar and circumstellar regions. This missing sulphur is postulated to be mostly locked up in refractory form. With ALMA we have detected sulphur monoxide (SO), a known shock tracer, in the HD 100546 protoplanetary disk. Two rotational transitions: $J=7_{7}-6_{6}$ (301.286 GHz) and $J=7_8-6_7$ (304.078 GHz) are detected in their respective integrated intensity maps. The stacking of these transitions results in a clear 5$σ$ detection in the stacked line profile. The emission is compact but is spectrally resolved and the line profile has two components. One component peaks at the source velocity and the other is blue-shifted by 5 km s$^{-1}$. The kinematics and spatial distribution of the SO emission are not consistent with that expected from a purely Keplerian disk. We detect additional blue-shifted emission that we attribute to a disk wind. The disk component was simulated using LIME and a physical disk structure. The disk emission is asymmetric and best fit by a wedge of emission in the north east region of the disk coincident with a `hot-spot' observed in the CO $J=3-2$ line. The favoured hypothesis is that a possible inner disk warp (seen in CO emission) directly exposes the north-east side of the disk to heating by the central star, creating locally the conditions to launch a disk wind. Chemical models of a disk wind will help to elucidate why the wind is particularly highlighted in SO emission and whether a refractory source of sulphur is needed. An alternative explanation is that the SO is tracing an accretion shock from a circumplanetary disk associated with the proposed protoplanet embedded in the disk at 50 au. We also report a non-detection of SO in the protoplanetary disk around HD 97048.

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arXiv2017

Variable H$^{13}$CO$^+$ Emission in the IM Lup Disk: X-ray Driven Time-Dependent Chemistry?

We report the first detection of a substantial brightening event in an isotopologue of a key molecular ion, HCO$^+$, within a protoplanetary disk of a T Tauri star. The H$^{13}$CO$^+$ $J=3-2$ rotational transition was observed three times toward IM Lup between July 2014 and May 2015 with the Atacama Large Millimeter Array. The first two observations show similar spectrally integrated line and continuum fluxes, while the third observation shows a doubling in the disk integrated $J=3-2$ line flux compared to the continuum, which does not change between the three epochs. We explore models of an X-ray active star irradiating the disk via stellar flares, and find that the optically thin H$^{13}$CO$^+$ emission variation can potentially be explained via X-ray driven chemistry temporarily enhancing the HCO$^+$ abundance in the upper layers of the disk atmosphere during large or prolonged flaring events. If the HCO$^+$ enhancement is indeed caused by a X-ray flare, future observations should be able to spatially resolve these events and potentially enable us to watch the chemical aftermath of the high-energy stellar radiation propagating across the face of protoplanetary disks, providing a new pathway to explore ionization physics and chemistry, including electron density, in disks.

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arXiv2017

H2CO distribution and formation in the TW Hya disk

H2CO is one of the most readily detected organic molecules in protoplanetary disks. Yet its distribution and dominant formation pathway(s) remain largely unconstrained. To address these issues, we present ALMA observations of two H2CO lines (3_{12}-2_{11} and 5_{15}-4_{14}) at 0".5 (~30 au) spatial resolution toward the disk around the nearby T Tauri star TW Hya. Emission from both lines is spatially resolved, showing a central depression, a peak at 0".4 radius, and a radial decline at larger radii with a bump at ~1", near the millimeter continuum edge. We adopt a physical model for the disk and use toy models to explore the radial and vertical H2CO abundance structure. We find that the observed emission implies the presence of at least two distinct H2CO gas reservoirs: (1) a warm and unresolved inner component (<10 au), and (2) an outer component that extends from ~15 au to beyond the millimeter continuum edge. The outer component is further constrained by the line ratio to arise in a more elevated disk layer at larger radii. The inferred H2CO abundance structure agrees well with disk chemistry models, which predict efficient H2CO gas-phase formation close to the star, and cold H2CO grain surface formation, through H additions to condensed CO, followed by non-thermal desorption in the outer disk. The implied presence of active grain surface chemistry in the TW Hya disk is consistent with the recent detection of CH3OH emission, and suggests that more complex organic molecules are formed in disks, as well.

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arXiv2017

A Multi-Ringed, Modestly-Inclined Protoplanetary Disk around AA Tau

AA Tau is the archetype for a class of stars with a peculiar periodic photometric variability thought to be related to a warped inner disk structure with a nearly edge-on viewing geometry. We present high resolution ($\sim$0.2") ALMA observations of the 0.87 and 1.3~mm dust continuum emission from the disk around AA Tau. These data reveal an evenly spaced three-ringed emission structure, with distinct peaks at 0.34", 0.66", and 0.99", all viewed at a modest inclination of 59.1$^{\circ}\pm$0.3$^{\circ}$ (decidedly not edge-on). In addition to this ringed substructure, we find non-axisymmetric features including a `bridge' of emission that connects opposite sides of the innermost ring. We speculate on the nature of this `bridge' in light of accompanying observations of HCO$^+$ and $^{13}$CO (J=3--2) line emission. The HCO$^+$ emission is bright interior to the innermost dust ring, with a projected velocity field that appears rotated with respect to the resolved disk geometry, indicating the presence of a warp or inward radial flow. We suggest that the continuum bridge and HCO$^+$ line kinematics could originate from gap-crossing accretion streams, which may be responsible for the long-duration dimming of optical light from AA Tau.

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