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Ryojiro Honda

Publications and source records attributed to Ryojiro Honda.

2 recordsLinked to original sources

Cell$-$cell and Cell$-$noise Interactions of Bacterial Cells in a Shallow Circular Pool and Transitions of Collective Motions

We have experimentally investigated the transitions of collective motions of bacterial cells in a shallow circular pool using the bacterial species $Bacillus$ $subtilis$. In our previous paper, we reported that the collective motions were classified into six phases on a phase diagram with two parameters, namely, the reduced cell length $λ$ and the cell density $ρ$. In this study, we focused on the sharp transitions at $λ\cong0.1$ ($\equiv λ_{\rm C1}$) with low values of $ρ$ between the $random$ $motion$ phase and the $one$-$way$ $rotational$ $motion$ phase. By introducing the order parameter $Q$ which measures the aligned cell motion along the circumferential direction of a pool, the transitions at $λ=λ_{\rm C1}$ were clearly characterized. On the basis of the detailed observations of single-cell trajectories in a pool, we verified that the effect of cell$-$noise interactions was widely distributed. We conclude that, even in such random environment, the sharp transitions of collective motions were caused by the cell$-$cell interactions at $λ=λ_{\rm C1}$.

physics.bio-ph

Self-Elongation with Sequential Folding of a Filament of Bacterial Cells

Under hard-agar and nutrient-rich conditions, a cell of $Bacillus$ $subtilis$ grows as a single filament owing to the failure of cell separation after each growth and division cycle. The self-elongating filament of cells shows sequential folding processes, and multifold structures extend over an agar plate. We report that the growth process from the exponential phase to the stationary phase is well described by the time evolution of fractal dimensions of the filament configuration. We propose a method of characterizing filament configurations using a set of lengths of multifold parts of a filament. Systems of differential equations are introduced to describe the folding processes that create multifold structures in the early stage of the growth process. We show that the fitting of experimental data to the solutions of equations is excellent, and the parameters involved in our model systems are determined.,

cond-mat.soft