arXiv subjects

Ryosuke Yamano

Publications and source records attributed to Ryosuke Yamano.

3 recordsLinked to original sources

arXiv2026

Faster Exact Algorithms for Equal-Subset-Sum

We study exact algorithms for Equal-Subset-Sum in the worst-case setting: given a set $S$ of $n$ integers, find two distinct subsets $A,B\subseteq S$ whose sums are equal. We establish a new state-of-the-art bound for this problem by improving the fastest known algorithm, due to Randolph and W\k{e}grzycki (STOC 2026), from $O^*(1.7067^n)$ time and space to an algorithm that runs in $O^*(1.6994^n)$ time and uses $O^*(1.5664^n)$ space. We also improve the best known polynomial-space running time, due to Mucha, Nederlof, Pawlewicz, and W\k{e}grzycki (ESA 2019), from $O^*(2.6817^n)$ to $O^*(2.5430^n)$. Finally, we investigate time-space tradeoffs for this problem and improve the running times achievable under a broad range of exponential-space bounds.

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arXiv2026

Improved Approximation Algorithms and Hardness Results for Shortest Common Superstring with Reverse Complements

The Shortest Common Superstring (SCS) problem is a fundamental task in sequence analysis. In genome assembly, however, the double-stranded nature of DNA implies that each fragment may occur either in its original orientation or as its reverse complement. This motivates the Shortest Common Superstring with Reverse Complements (SCS-RC) problem, which asks for a shortest string that contains, for each input string, either the string itself or its reverse complement as a substring. The previously best-known approximation ratio for SCS-RC was $\frac{23}{8}$. In this paper, we present a new approximation algorithm achieving an improved ratio of $\frac{8}{3}$. Our approach computes an optimal constrained cycle cover by reducing the problem, via a novel gadget construction, to a maximum-weight perfect matching in a general graph. We also investigate the computational hardness of SCS-RC. While the decision version is known to be NP-complete, no explicit inapproximability results were previously established. We show that the hardness of SCS carries over to SCS-RC through a polynomial-time reduction, implying that it is NP-hard to approximate SCS-RC within a factor better than $\frac{333}{332}$. Notably, this hardness result holds even for the DNA alphabet.

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arXiv2026

Improved Approximation Ratios for the Shortest Common Superstring Problem with Reverse Complements

The Shortest Common Superstring (SCS) problem asks for the shortest string that contains each of a given set of strings as a substring. Its reverse-complement variant, the Shortest Common Superstring problem with Reverse Complements (SCS-RC), naturally arises in bioinformatics applications, where for each input string, either the string itself or its reverse complement must appear as a substring of the superstring. The well-known MGREEDY algorithm for the standard SCS constructs a superstring by first computing an optimal cycle cover on the overlap graph and then concatenating the strings corresponding to the cycles, while its refined variant, TGREEDY, further improves the approximation ratio. Although the original 4- and 3-approximation bounds of these algorithms have been successively improved for the standard SCS, no such progress has been made for the reverse-complement setting. A previous study extended MGREEDY to SCS-RC with a 4-approximation guarantee and briefly suggested that extending TGREEDY to the reverse-complement setting could achieve a 3-approximation. In this work, we strengthen these results by proving that the extensions of MGREEDY and TGREEDY to the reverse-complement setting achieve 3.75- and 2.875-approximation ratios, respectively. Our analysis extends the classical proofs for the standard SCS to handle the bidirectional overlaps introduced by reverse complements. These results provide the first formal improvement of approximation guarantees for SCS-RC, with the 2.875-approximate algorithm currently representing the best known bound for this problem.

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