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Ryota Kobayashi

Publications and source records attributed to Ryota Kobayashi.

At least 19 recordsLinked to original sources

TopiCLEAR: Adaptive embedding clustering for interpretable topic discovery from short texts

Topic discovery is a fundamental technique for text mining that identifies abstract topics within large document collections. A recent approach to topic discovery is to cluster document or sentence embeddings, typically obtained from pre-trained language models, and represent each cluster as a topic. Despite their strong empirical performance, the design principles linking the geometry of embedding spaces to human-interpretable topic organization remain unclear. Clarifying the relationship between these geometric structures and topic interpretability is therefore a key challenge in topic discovery. In this study, we propose TopiCLEAR (Topic discovery by CLustering Embeddings with Adaptive dimensionality Reduction), a simple framework that integrates document embeddings with iterative clustering based on adaptive dimensionality reduction. TopiCLEAR is guided by the hypothesis that human-interpretable topics correspond to low-dimensional geometric structures in embedding spaces and leverages adaptive dimensionality reduction to identify them. We evaluate topic quality using a document-level approach that combines quantitative evaluation based on human-labeled data with qualitative assessment in the absence of ground-truth labels. Experiments on four benchmark datasets, covering both formal and informal texts, show that TopiCLEAR consistently achieves strong agreement with human annotations, particularly for short and informal texts. Furthermore, a case study on Twitter data demonstrates that TopiCLEAR produces more interpretable topics than Latent Dirichlet Allocation (LDA), recovering both human-annotated topic structure and coherent sub-topic structure. These results highlight the effectiveness of clustering documents in a low-dimensional topic space for topic discovery.

cs.CL

Structured Pruning of Large Language Models via Power Transformation and Sign-Preserving Score Aggregation with Adaptive Feature Retention

This paper proposes an improved structured pruning method for large language models (LLMs) that addresses key challenges in adapting Adaptive Feature Retention (AFR), an unstructured pruning technique, to structured pruning. When applying AFR to structured pruning, three major problems arise: distribution mismatch between heterogeneous pruning scores, loss of sign information indicating optimization direction consistency, and influence of outliers. To address these issues, we propose a unified approach combining power transformation for nonlinear distribution alignment, sign-preserving score aggregation, and percentile-based outlier removal. Experiments on Llama-3-8B, Vicuna-v1.5-13B, and LLaVA-v1.5-13B demonstrate that our method maintains accuracy comparable to unstructured pruning while achieving practical inference speedup through structured pruning.

cs.CL

An Isochron-Free Framework for Phase Reduction and Coupling Inference

Phase description provides a compact and powerful framework for analyzing synchronization dynamics in weakly coupled limit-cycle oscillators. While its classical formulation relies on the asymptotic phase defined by isochrons, reconstructing isochrons from observed trajectories is often challenging for complex models and real-world systems. Here we develop an isochron-free framework based on a readily computable generalized phase, such as the polar angle computed from observed trajectories. We theoretically show that, under near-uniform rotation of the generalized phase and sufficiently stable amplitude dynamics, a one-period stroboscopic description yields a closed circle map. The interaction term of the resulting circle map coincides, to leading order, with the phase coupling function obtained from the conventional phase reduction. Based on this circle map, we propose a method to infer coupling from oscillatory time series. The method is validated using synthetic data from van der Pol oscillators. Our framework broadens the applicability of phase reduction and provides a theoretically grounded method for coupling inference from oscillatory data.

nlin.AO

Data-driven inference of Hopf normal form representations from oscillatory time series

We introduce a data-driven framework that maps noisy oscillatory time series directly onto the Hopf normal form, enabling inference of underlying dynamics without knowledge of governing equations. By embedding the normal form in a probabilistic state-space model, the method jointly infers latent states and system parameters, yielding robust estimates of the natural frequency, Floquet exponent, and asymptotic phase even far from the bifurcation point and under strong noise. Combined with complex Gaussian process regression, the approach further reconstructs phase and amplitude sensitivity functions from data. Benchmarks on the van der Pol oscillator demonstrate substantially improved accuracy and noise robustness compared with existing phase-based and regression methods. This work establishes a direct bridge between normal-form theory and statistical inference, providing a general and practical route to low-dimensional descriptions of oscillatory dynamics in complex systems.

nlin.AO

Time-resolved synchronization analysis of stacked intrinsic Josephson junctions of a cuprate superconductor with frequency-modulated terahertz radiation spectra

Terahertz radiation from $\text{Bi}_2\text{Sr}_2\text{CaCu}_2\text{O}_{8+δ}$ intrinsic Josephson junctions (IJJs) provides an ideal platform to study the synchronization of a macroscopic quantum system. Here, we present a spectral analysis of a frequency-modulated Josephson plasma emitter coupled with patch antennas. In the unmodulated intensity distribution as a function of radiation frequency $I_{\mathrm{UM}}(ω)$, we observe a double Gaussian peak structure. Crucially, double-peak spectra obtained at a constant bias voltage imply either a rapid temporal distribution of resonances or their simultaneous excitation, driven by the mutual electromagnetic coupling between the IJJ mesa and the antennas. At low modulation frequencies $f_m$, the spectra are well reproduced by the products of $I_{\mathrm{UM}}(ω)$ and frequency combs, yielding a synchronized relaxation time $τ_s \simeq 0.28\text{ ns}$. Incorporating $τ_s$ quantitatively reproduces a drastic spectral transformation observed around $f_m \sim 1\text{ GHz}$, unveiling the sub-nanosecond non-equilibrium dynamics of coupled Josephson plasma.

cond-mat.supr-con

Optimising cryptocurrency portfolios through stable clustering of price correlation networks

The rapidly evolving cryptocurrency market presents unique challenges for investment due to its inherent volatility and evolving regulatory environment. Collective price movements can be exploited to construct diversified portfolios with improved risk-return profiles. This paper introduces an integrated framework that combines network analysis, price forecasting, and portfolio theory to identify stable groups of highly correlated cryptocurrencies for profitable portfolio construction. We employ the Louvain community detection algorithm together with consensus clustering to extract temporally persistent correlation clusters, and incorporate ARIMA-based price forecasts to enhance forward-looking cluster formation. Using 5 years of daily closing prices, we evaluate portfolio performance across multiple strategies and holding horizons, assessing both profitability and downside risk with return-based and tail-risk metrics. Our empirical results show that predictive consensus-clustering portfolios maintain consistently positive and stable performance up to a 14-day horizon, exhibit favourable gain-loss asymmetry, and achieve tighter tail-risk control. These findings demonstrate that stable interdependencies in cryptocurrency markets can be leveraged to construct profitable and risk-aware portfolios across short-term holding horizons.

physics.pop-ph

Distinguishing pairwise and higher-order interactions in coupled oscillators from time series

Rhythmic phenomena, which are ubiquitous in biological systems, are typically modelled as systems of coupled limit cycle oscillators. Recently, there has been an increased interest in understanding the impact of higher-order interactions on the population dynamics of coupled oscillators. Meanwhile, the estimation of a mathematical model from experimental data is an essential step in understanding the dynamics of real-world complex systems. In coupled oscillator systems, identifying the type of interaction (e.g. pairwise or three-body) is challenging, because different interactions can exhibit similar dynamical states in experimental conditions. In this study, we have developed a method based on the adaptive LASSO (Least Absolute Shrinkage and Selection Operator) to infer the interactions among oscillators from time series data. The proposed method successfully identifies the type of interaction and estimates the probabilities of pairwise and three-body couplings. Through systematic analysis of synthetic datasets, we have demonstrated that our method outperforms two baseline methods, LASSO and OLS (Ordinary Least Squares), in accurately inferring the topology and strength of couplings between oscillators. Furthermore, the proposed method is applied to human brain network data, demonstrating its practical utility. Finally, we extend the method to more general oscillatory systems, including those exhibiting the deformation of limit cycles and those with four-body interactions. These results suggest that our method is a promising tool for identifying interaction mechanisms in oscillatory systems.

nlin.CD

Manipulating Collective Opinion through Social Network Intervention

Social media platforms have transformed the dynamics of collective opinion formation, enabling rapid, large-scale interactions while simultaneously exposing online discourse to polarization and manipulation. Traditional models of opinion dynamics often predict convergence to a consensus, yet empirical evidence consistently highlights persistent polarization and radicalization, especially on contentious issues. This paper analytically investigates a mathematical model that captures the complex interplay of polarization, radicalization, and consensus within networked societies. By analyzing the emergence and stability of opinion clusters, we identify critical thresholds marking phase transitions in collective behavior, interpreted via a stability landscape. We further explore network-based interventions to manipulate the collective opinion, revealing that reducing inter-agent interactions can lead to unintended, irreversible shifts in opinion distributions. Our results underscore the dual-edged nature of intervention strategies, offering theoretical insight into the fragility and manipulability of public opinion in digital environments.

physics.soc-ph

Network inference applicable to both synchronous and desynchronous systems from oscillatory signals

Synchronization is ubiquitous in nature, which is mathematically described by coupled oscillators. Synchronization strongly depends on the interaction network, and the network plays a crucial role in controlling the dynamics. To understand and control synchronization dynamics in the real world, it is essential to identify the network from the observed data. While previous studies have developed the methods for inferring the network of asynchronous systems, it remains challenging to infer the network of well-synchronized oscillators. In this study, we develop a method for inferring the network of synchronized and desynchronized oscillators from time series. Our method expands the applicability of network inference to a wider class of oscillatory systems. The proposed method discards a large part of data used for inference, which may seem counterintuitive. However, the effectiveness of the method is supported by the phase reduction theory, a well-established theory for weakly coupled oscillators. We verify the proposed method by applying it to simulated data of the limit-cycle oscillators. This study provides an important step towards understanding synchronization in real-world systems from a network perspective.

nlin.AO

Gaussian Process Phase Interpolation for estimating the asymptotic phase of a limit cycle oscillator from time series data

Rhythmic activity commonly observed in biological systems, occurring from the cellular level to the organismic level, is typically modeled as limit cycle oscillators. Phase reduction theory serves as a useful analytical framework for elucidating the synchronization mechanism of these oscillators. Essentially, this theory describes the dynamics of a multi-dimensional nonlinear oscillator using a single variable called asymptotic phase. In order to understand and control the rhythmic phenomena in the real world, it is crucial to estimate the asymptotic phase from the observed data. In this study, we propose a new method, Gaussian Process Phase Interpolation (GPPI), for estimating the asymptotic phase from time series data. The GPPI method first evaluates the asymptotic phase on the limit cycle and subsequently estimates the asymptotic phase outside the limit cycle employing Gaussian process regression. Thanks to the high expressive power of Gaussian processes, the GPPI is capable of capturing a variety of functions. Furthermore, it is easily applicable even when the dimension of the system increases. The performance of the GPPI is tested by using simulation data from the Stuart-Landau oscillator and the Hodgkin-Huxley oscillator. The results demonstrate that the GPPI can accurately estimate the asymptotic phase even in the presence of high observation noise and strong nonlinearity. Additionally, the GPPI is demonstrated as an effective tool for data-driven phase control of a Hodgkin-Huxley oscillator. Thus, the proposed GPPI will facilitate the data-driven modeling of the limit cycle oscillators.

nlin.AO

Large Language Model-empowered multimodal strain sensory system for shape recognition, monitoring, and human interaction of tensegrity

A tensegrity-based system is a promising approach for dynamic exploration of uneven and unpredictable environments, particularly, space exploration. However, implementing such systems presents challenges in terms of intelligent aspects: state recognition, wireless monitoring, human interaction, and smart analyzing and advising function. Here, we introduce a 6-strut tensegrity integrate with 24 multimodal strain sensors by leveraging both deep learning model and large language models to realize smart tensegrity. Using conductive flexible tendons assisted by long short-term memory model, the tensegrity achieves the self-shape reconstruction without extern sensors. Through integrating the flask server and gpt-3.5-turbo model, the tensegrity autonomously enables to send data to iPhone for wireless monitoring and provides data analysis, explanation, prediction, and suggestions to human for decision making. Finally, human interaction system of the tensegrity helps human obtain necessary information of tensegrity from the aspect of human language. Overall, this intelligent tensegrity-based system with self-sensing tendons showcases potential for future exploration, making it a versatile tool for real-world applications.

cs.RO

Inference of Monosynaptic Connections from Parallel Spike Trains: A Review

This article presents a mini-review about the progress in inferring monosynaptic connections from spike trains of multiple neurons over the past twenty years. First, we explain a variety of meanings of ``neuronal connectivity'' in different research areas of neuroscience, such as structural connectivity, monosynaptic connectivity, and functional connectivity. Among these, we focus on the methods used to infer the monosynaptic connectivity from spike data. We then summarize the inference methods based on two main approaches, i.e., correlation-based and model-based approaches. Finally, we describe available source codes for connectivity inference and future challenges. Although inference will never be perfect, the accuracy of identifying the monosynaptic connections has improved dramatically in recent years due to continuous efforts.

q-bio.NC

An extended Hilbert transform method for reconstructing the phase from an oscillatory signal

Rhythmic activity is ubiquitous in biological systems from the cellular to organism level. Reconstructing the instantaneous phase is the first step in analyzing the essential mechanism leading to a synchronization state from the observed signals. A popular method of phase reconstruction is based on the Hilbert transform, which can only reconstruct the interpretable phase from a limited class of signals, e.g., narrow band signals. To address this issue, we propose an extended Hilbert transform method that accurately reconstructs the phase from various oscillatory signals. The proposed method is developed by analyzing the reconstruction error of the Hilbert transform method with the aid of Bedrosian's theorem. We validate the proposed method using synthetic data and show its systematically improved performance compared with the conventional Hilbert transform method with respect to accurately reconstructing the phase. Finally, we demonstrate that the proposed method is potentially useful for detecting the phase shift in an observed signal. The proposed method is expected to facilitate the study of synchronization phenomena from experimental data.

nlin.AO

Evolution of the public opinion on COVID-19 vaccination in Japan

Vaccines are promising tools to control the spread of COVID-19. An effective vaccination campaign requires government policies and community engagement, sharing experiences for social support, and voicing concerns to vaccine safety and efficiency. The increasing use of online social platforms allows us to trace large-scale communication and infer public opinion in real-time. We collected more than 100 million vaccine-related tweets posted by 8 million users and used the Latent Dirichlet Allocation model to perform automated topic modeling of tweet texts during the vaccination campaign in Japan. We identified 15 topics grouped into 4 themes on Personal issue, Breaking news, Politics, and Conspiracy and humour. The evolution of the popularity of themes revealed a shift in public opinion, initially sharing the attention over personal issues (individual aspect), collecting information from the news (knowledge acquisition), and government criticisms, towards personal experiences once confidence in the vaccination campaign was established. An interrupted time series regression analysis showed that the Tokyo Olympic Games affected public opinion more than other critical events but not the course of the vaccination. Public opinion on politics was significantly affected by various events, positively shifting the attention in the early stages of the vaccination campaign and negatively later. Tweets about personal issues were mostly retweeted when the vaccination reached the younger population. The associations between the vaccination campaign stages and tweet themes suggest that the public engagement in the social platform contributed to speedup vaccine uptake by reducing anxiety via social learning and support.

physics.soc-ph

Estimating asymptotic phase and amplitude functions of limit-cycle oscillators from time series data

We propose a method for estimating the asymptotic phase and amplitude functions of limit-cycle oscillators using observed time series data without prior knowledge of their dynamical equations. The estimation is performed by polynomial regression and can be solved as a convex optimization problem. The validity of the proposed method is numerically illustrated by using two-dimensional limit-cycle oscillators as examples. As an application, we demonstrate data-driven fast entrainment with amplitude suppression using the optimal periodic input derived from the estimated phase and amplitude functions.

nlin.AO

Modeling Collective Anticipation and Response on Wikipedia

The dynamics of popularity in online media are driven by a combination of endogenous spreading mechanisms and response to exogenous shocks including news and events. However, little is known about the dependence of temporal patterns of popularity on event-related information, e.g. which types of events trigger long-lasting activity. Here we propose a simple model that describes the dynamics around peaks of popularity by incorporating key features, i.e., the anticipatory growth and the decay of collective attention together with circadian rhythms. The proposed model allows us to develop a new method for predicting the future page view activity and for clustering time series. To validate our methodology, we collect a corpus of page view data from Wikipedia associated to a range of planned events, that are events which we know in advance will have a fixed date in the future, such as elections and sport events. Our methodology is superior to existing models in both prediction and clustering tasks. Furthermore, restricting to Wikipedia pages associated to association football, we observe that the specific realization of the event, in our case which team wins a match or the type of the match, has a significant effect on the response dynamics after the event. Our work demonstrates the importance of appropriately modeling all phases of collective attention, as well as the connection between temporal patterns of attention and characteristic underlying information of the events they represent.

cs.SI

Modeling the spread of fake news on Twitter

Fake news can have a significant negative impact on society because of the growing use of mobile devices and the worldwide increase in Internet access. It is therefore essential to develop a simple mathematical model to understand the online dissemination of fake news. In this study, we propose a point process model of the spread of fake news on Twitter. The proposed model describes the spread of a fake news item as a two-stage process: initially, fake news spreads as a piece of ordinary news; then, when most users start recognizing the falsity of the news item, that itself spreads as another news story. We validate this model using two datasets of fake news items spread on Twitter. We show that the proposed model is superior to the current state-of-the-art methods in accurately predicting the evolution of the spread of a fake news item. Moreover, a text analysis suggests that our model appropriately infers the correction time, i.e., the moment when Twitter users start realizing the falsity of the news item. The proposed model contributes to understanding the dynamics of the spread of fake news on social media. Its ability to extract a compact representation of the spreading pattern could be useful in the detection and mitigation of fake news.

cs.SI

Estimating Community Feedback Effect on Topic Choice in Social Media with Predictive Modeling

Social media users post content on various topics. A defining feature of social media is that other users can provide feedback -- called community feedback -- to their content in the form of comments, replies, and retweets. We hypothesize that the amount of received feedback influences the choice of topics on which a social media user posts. However, it is challenging to test this hypothesis as user heterogeneity and external confounders complicate measuring the feedback effect. Here, we investigate this hypothesis with a predictive approach based on an interpretable model of an author's decision to continue the topic of their previous post. We explore the confounding factors, including author's topic preferences and unobserved external factors such as news and social events, by optimizing the predictive accuracy. This approach enables us to identify which users are susceptible to community feedback. Overall, we find that 33\% and 14\% of active users in Reddit and Twitter, respectively, are influenced by community feedback. The model suggests that this feedback alters the probability of topic continuation up to 14\%, depending on the user and the amount of feedback.

cs.SI