arXiv subjects

Sören Auer

Publications and source records attributed to Sören Auer.

At least 55 records · Page 3Linked to original sources

arXiv2025

Iterative Hypothesis Generation for Scientific Discovery with Monte Carlo Nash Equilibrium Self-Refining Trees

Scientific hypothesis generation is a fundamentally challenging task in research, requiring the synthesis of novel and empirically grounded insights. Traditional approaches rely on human intuition and domain expertise, while purely large language model (LLM) based methods often struggle to produce hypotheses that are both innovative and reliable. To address these limitations, we propose the Monte Carlo Nash Equilibrium Self-Refine Tree (MC-NEST), a novel framework that integrates Monte Carlo Tree Search with Nash Equilibrium strategies to iteratively refine and validate hypotheses. MC-NEST dynamically balances exploration and exploitation through adaptive sampling strategies, which prioritize high-potential hypotheses while maintaining diversity in the search space. We demonstrate the effectiveness of MC-NEST through comprehensive experiments across multiple domains, including biomedicine, social science, and computer science. MC-NEST achieves average scores of 2.65, 2.74, and 2.80 (on a 1-3 scale) for novelty, clarity, significance, and verifiability metrics on the social science, computer science, and biomedicine datasets, respectively, outperforming state-of-the-art prompt-based methods, which achieve 2.36, 2.51, and 2.52 on the same datasets. These results underscore MC-NEST's ability to generate high-quality, empirically grounded hypotheses across diverse domains. Furthermore, MC-NEST facilitates structured human-AI collaboration, ensuring that LLMs augment human creativity rather than replace it. By addressing key challenges such as iterative refinement and the exploration-exploitation balance, MC-NEST sets a new benchmark in automated hypothesis generation. Additionally, MC-NEST's ethical design enables responsible AI use, emphasizing transparency and human supervision in hypothesis generation.

cs.CL↗

arXiv2025

Leveraging Large Language Models for Realizing Truly Intelligent User Interfaces

The number of published scholarly articles is growing at a significant rate, making scholarly knowledge organization increasingly important. Various approaches have been proposed to organize scholarly information, including describing scholarly knowledge semantically leveraging knowledge graphs. Transforming unstructured knowledge, presented within articles, to structured and semantically represented knowledge generally requires human intelligence and labor since natural language processing methods alone typically do not render sufficient precision and recall for many applications. With the recent developments of Large Language Models (LLMs), it becomes increasingly possible to provide truly intelligent user interfaces guiding humans in the transformation process. We present an approach to integrate non-intrusive LLMs guidance into existing user interfaces. More specifically, we integrate LLM-supported user interface components into an existing scholarly knowledge infrastructure. Additionally, we provide our experiences with LLM integration, detailing best practices and obstacles. Finally, we evaluate the approach using a small-scale user evaluation with domain experts.

cs.DL↗

arXiv2024

ORKG ASK: a Neuro-symbolic Scholarly Search and Exploration System

Purpose: Finding scholarly articles is a time-consuming and cumbersome activity, yet crucial for conducting science. Due to the growing number of scholarly articles, new scholarly search systems are needed to effectively assist researchers in finding relevant literature. Methodology: We take a neuro-symbolic approach to scholarly search and exploration by leveraging state-of-the-art components, including semantic search, Large Language Models (LLMs), and Knowledge Graphs (KGs). The semantic search component composes a set of relevant articles. From this set of articles, information is extracted and presented to the user. Findings: The presented system, called ORKG ASK (Assistant for Scientific Knowledge), provides a production-ready search and exploration system. Our preliminary evaluation indicates that our proposed approach is indeed suitable for the task of scholarly information retrieval. Value: With ORKG ASK, we present a next-generation scholarly search and exploration system and make it available online. Additionally, the system components are open source with a permissive license.

cs.DL↗

arXiv2024

NeuroSym-BioCAT: Leveraging Neuro-Symbolic Methods for Biomedical Scholarly Document Categorization and Question Answering

The growing volume of biomedical scholarly document abstracts presents an increasing challenge in efficiently retrieving accurate and relevant information. To address this, we introduce a novel approach that integrates an optimized topic modelling framework, OVB-LDA, with the BI-POP CMA-ES optimization technique for enhanced scholarly document abstract categorization. Complementing this, we employ the distilled MiniLM model, fine-tuned on domain-specific data, for high-precision answer extraction. Our approach is evaluated across three configurations: scholarly document abstract retrieval, gold-standard scholarly documents abstract, and gold-standard snippets, consistently outperforming established methods such as RYGH and bio-answer finder. Notably, we demonstrate that extracting answers from scholarly documents abstracts alone can yield high accuracy, underscoring the sufficiency of abstracts for many biomedical queries. Despite its compact size, MiniLM exhibits competitive performance, challenging the prevailing notion that only large, resource-intensive models can handle such complex tasks. Our results, validated across various question types and evaluation batches, highlight the robustness and adaptability of our method in real-world biomedical applications. While our approach shows promise, we identify challenges in handling complex list-type questions and inconsistencies in evaluation metrics. Future work will focus on refining the topic model with more extensive domain-specific datasets, further optimizing MiniLM and utilizing large language models (LLM) to improve both precision and efficiency in biomedical question answering.

cs.CL↗

arXiv2024

LLMs4Synthesis: Leveraging Large Language Models for Scientific Synthesis

In response to the growing complexity and volume of scientific literature, this paper introduces the LLMs4Synthesis framework, designed to enhance the capabilities of Large Language Models (LLMs) in generating high-quality scientific syntheses. This framework addresses the need for rapid, coherent, and contextually rich integration of scientific insights, leveraging both open-source and proprietary LLMs. It also examines the effectiveness of LLMs in evaluating the integrity and reliability of these syntheses, alleviating inadequacies in current quantitative metrics. Our study contributes to this field by developing a novel methodology for processing scientific papers, defining new synthesis types, and establishing nine detailed quality criteria for evaluating syntheses. The integration of LLMs with reinforcement learning and AI feedback is proposed to optimize synthesis quality, ensuring alignment with established criteria. The LLMs4Synthesis framework and its components are made available, promising to enhance both the generation and evaluation processes in scientific research synthesis.

cs.CL↗

arXiv2024

LLMs4OL 2024 Overview: The 1st Large Language Models for Ontology Learning Challenge

This paper outlines the LLMs4OL 2024, the first edition of the Large Language Models for Ontology Learning Challenge. LLMs4OL is a community development initiative collocated with the 23rd International Semantic Web Conference (ISWC) to explore the potential of Large Language Models (LLMs) in Ontology Learning (OL), a vital process for enhancing the web with structured knowledge to improve interoperability. By leveraging LLMs, the challenge aims to advance understanding and innovation in OL, aligning with the goals of the Semantic Web to create a more intelligent and user-friendly web. In this paper, we give an overview of the 2024 edition of the LLMs4OL challenge and summarize the contributions.

cs.CL↗

arXiv2024

Fine-tuning and Prompt Engineering with Cognitive Knowledge Graphs for Scholarly Knowledge Organization

The increasing amount of published scholarly articles, exceeding 2.5 million yearly, raises the challenge for researchers in following scientific progress. Integrating the contributions from scholarly articles into a novel type of cognitive knowledge graph (CKG) will be a crucial element for accessing and organizing scholarly knowledge, surpassing the insights provided by titles and abstracts. This research focuses on effectively conveying structured scholarly knowledge by utilizing large language models (LLMs) to categorize scholarly articles and describe their contributions in a structured and comparable manner. While previous studies explored language models within specific research domains, the extensive domain-independent knowledge captured by LLMs offers a substantial opportunity for generating structured contribution descriptions as CKGs. Additionally, LLMs offer customizable pathways through prompt engineering or fine-tuning, thus facilitating to leveraging of smaller LLMs known for their efficiency, cost-effectiveness, and environmental considerations. Our methodology involves harnessing LLM knowledge, and complementing it with domain expert-verified scholarly data sourced from a CKG. This strategic fusion significantly enhances LLM performance, especially in tasks like scholarly article categorization and predicate recommendation. Our method involves fine-tuning LLMs with CKG knowledge and additionally injecting knowledge from a CKG with a novel prompting technique significantly increasing the accuracy of scholarly knowledge extraction. We integrated our approach in the Open Research Knowledge Graph (ORKG), thus enabling precise access to organized scholarly knowledge, crucially benefiting domain-independent scholarly knowledge exchange and dissemination among policymakers, industrial practitioners, and the general public.

cs.DL↗

arXiv2024

SWARM-SLR -- Streamlined Workflow Automation for Machine-actionable Systematic Literature Reviews

Authoring survey or review articles still requires significant tedious manual effort, despite many advancements in research knowledge management having the potential to improve efficiency, reproducibility, and reuse. However, these advancements bring forth an increasing number of approaches, tools, and systems, which often cover only specific stages and lack a comprehensive workflow utilizing their task-specific strengths. We propose the Streamlined Workflow Automation for Machine-actionable Systematic Literature Reviews (SWARM-SLR) to crowdsource the improvement of SLR efficiency while maintaining scientific integrity in a state-of-the-art knowledge discovery and distribution process. The workflow aims to domain-independently support researchers in collaboratively and sustainably managing the rising scholarly knowledge corpus. By synthesizing guidelines from the literature, we have composed a set of 65 requirements, spanning from planning to reporting a review. Existing tools were assessed against these requirements and synthesized into the SWARM-SLR workflow prototype, a ready-for-operation software support tool. The SWARM-SLR was evaluated via two online surveys, which largely confirmed the validity of the 65 requirements and situated 11 tools to the different life-cycle stages. The SWARM-SLR workflow was similarly evaluated and found to be supporting almost the entire span of an SLR, excelling specifically in search and retrieval, information extraction, knowledge synthesis, and distribution. Our SWARM-SLR requirements and workflow support tool streamlines the SLR support for researchers, allowing sustainable collaboration by linking individual efficiency improvements to crowdsourced knowledge management. If these efforts are continued, we expect the increasing number of tools to be manageable and usable inside fully structured, (semi-)automated literature review workflows.

cs.DL↗

arXiv2024

Exploring the Latest LLMs for Leaderboard Extraction

The rapid advancements in Large Language Models (LLMs) have opened new avenues for automating complex tasks in AI research. This paper investigates the efficacy of different LLMs-Mistral 7B, Llama-2, GPT-4-Turbo and GPT-4.o in extracting leaderboard information from empirical AI research articles. We explore three types of contextual inputs to the models: DocTAET (Document Title, Abstract, Experimental Setup, and Tabular Information), DocREC (Results, Experiments, and Conclusions), and DocFULL (entire document). Our comprehensive study evaluates the performance of these models in generating (Task, Dataset, Metric, Score) quadruples from research papers. The findings reveal significant insights into the strengths and limitations of each model and context type, providing valuable guidance for future AI research automation efforts.

cs.CL↗

arXiv2024

Large Language Models as Evaluators for Scientific Synthesis

Our study explores how well the state-of-the-art Large Language Models (LLMs), like GPT-4 and Mistral, can assess the quality of scientific summaries or, more fittingly, scientific syntheses, comparing their evaluations to those of human annotators. We used a dataset of 100 research questions and their syntheses made by GPT-4 from abstracts of five related papers, checked against human quality ratings. The study evaluates both the closed-source GPT-4 and the open-source Mistral model's ability to rate these summaries and provide reasons for their judgments. Preliminary results show that LLMs can offer logical explanations that somewhat match the quality ratings, yet a deeper statistical analysis shows a weak correlation between LLM and human ratings, suggesting the potential and current limitations of LLMs in scientific synthesis evaluation.

cs.CL↗

arXiv2024

Scholarly Question Answering using Large Language Models in the NFDI4DataScience Gateway

This paper introduces a scholarly Question Answering (QA) system on top of the NFDI4DataScience Gateway, employing a Retrieval Augmented Generation-based (RAG) approach. The NFDI4DS Gateway, as a foundational framework, offers a unified and intuitive interface for querying various scientific databases using federated search. The RAG-based scholarly QA, powered by a Large Language Model (LLM), facilitates dynamic interaction with search results, enhancing filtering capabilities and fostering a conversational engagement with the Gateway search. The effectiveness of both the Gateway and the scholarly QA system is demonstrated through experimental analysis.

cs.CL↗

arXiv2024

Effective Context Selection in LLM-based Leaderboard Generation: An Empirical Study

This paper explores the impact of context selection on the efficiency of Large Language Models (LLMs) in generating Artificial Intelligence (AI) research leaderboards, a task defined as the extraction of (Task, Dataset, Metric, Score) quadruples from scholarly articles. By framing this challenge as a text generation objective and employing instruction finetuning with the FLAN-T5 collection, we introduce a novel method that surpasses traditional Natural Language Inference (NLI) approaches in adapting to new developments without a predefined taxonomy. Through experimentation with three distinct context types of varying selectivity and length, our study demonstrates the importance of effective context selection in enhancing LLM accuracy and reducing hallucinations, providing a new pathway for the reliable and efficient generation of AI leaderboards. This contribution not only advances the state of the art in leaderboard generation but also sheds light on strategies to mitigate common challenges in LLM-based information extraction.

cs.CL↗

arXiv2024

LLMs4OM: Matching Ontologies with Large Language Models

Ontology Matching (OM), is a critical task in knowledge integration, where aligning heterogeneous ontologies facilitates data interoperability and knowledge sharing. Traditional OM systems often rely on expert knowledge or predictive models, with limited exploration of the potential of Large Language Models (LLMs). We present the LLMs4OM framework, a novel approach to evaluate the effectiveness of LLMs in OM tasks. This framework utilizes two modules for retrieval and matching, respectively, enhanced by zero-shot prompting across three ontology representations: concept, concept-parent, and concept-children. Through comprehensive evaluations using 20 OM datasets from various domains, we demonstrate that LLMs, under the LLMs4OM framework, can match and even surpass the performance of traditional OM systems, particularly in complex matching scenarios. Our results highlight the potential of LLMs to significantly contribute to the field of OM.

cs.AI↗

arXiv2024

Toward FAIR Semantic Publishing of Research Dataset Metadata in the Open Research Knowledge Graph

Search engines these days can serve datasets as search results. Datasets get picked up by search technologies based on structured descriptions on their official web pages, informed by metadata ontologies such as the Dataset content type of schema.org. Despite this promotion of the content type dataset as a first-class citizen of search results, a vast proportion of datasets, particularly research datasets, still need to be made discoverable and, therefore, largely remain unused. This is due to the sheer volume of datasets released every day and the inability of metadata to reflect a dataset's content and context accurately. This work seeks to improve this situation for a specific class of datasets, namely research datasets, which are the result of research endeavors and are accompanied by a scholarly publication. We propose the ORKG-Dataset content type, a specialized branch of the Open Research Knowledge Graoh (ORKG) platform, which provides descriptive information and a semantic model for research datasets, integrating them with their accompanying scholarly publications. This work aims to establish a standardized framework for recording and reporting research datasets within the ORKG-Dataset content type. This, in turn, increases research dataset transparency on the web for their improved discoverability and applied use. In this paper, we present a proposal -- the minimum FAIR, comparable, semantic description of research datasets in terms of salient properties of their supporting publication. We design a specific application of the ORKG-Dataset semantic model based on 40 diverse research datasets on scientific information extraction.

cs.DL↗

arXiv2024

Organizing Scientific Knowledge From Energy System Research Using the Open Research Knowledge Graph

Engineering sciences, such as energy system research, play an important role in developing solutions to technical, environmental, economic, and social challenges of our modern society. In this context, the transformation of energy systems into climate-neutral systems is one of the key strategies for mitigating climate change. For the transformation of energy systems, engineers model, simulate and analyze scenarios and transformation pathways to initiate debates about possible transformation strategies. For these debates and research in general, all steps of the research process must be traceable to guarantee the trustworthiness of published results, avoid redundancies, and ensure their social acceptance. However, the analysis of energy systems is an interdisciplinary field as the investigations of large, complex energy systems often require the use of different software applications and large amounts of heterogeneous data. Engineers must therefore communicate, understand, and (re)use heterogeneous scientific knowledge and data. Although the importance of FAIR scientific knowledge and data in the engineering sciences and energy system research is increasing, little research has been conducted on this topic. When it comes to publishing scientific knowledge and data from publications, software, and datasets (such as models, scenarios, and simulations) openly available and transparent, energy system research lags behind other research domains. According to Schmitt et al. and Nieße et al., engineers need technical support in the form of infrastructures, services, and terminologies to improve communication, understanding, and (re)use of scientific knowledge and data.

cs.DL↗

arXiv2024

Large Language Models for Scientific Information Extraction: An Empirical Study for Virology

In this paper, we champion the use of structured and semantic content representation of discourse-based scholarly communication, inspired by tools like Wikipedia infoboxes or structured Amazon product descriptions. These representations provide users with a concise overview, aiding scientists in navigating the dense academic landscape. Our novel automated approach leverages the robust text generation capabilities of LLMs to produce structured scholarly contribution summaries, offering both a practical solution and insights into LLMs' emergent abilities. For LLMs, the prime focus is on improving their general intelligence as conversational agents. We argue that these models can also be applied effectively in information extraction (IE), specifically in complex IE tasks within terse domains like Science. This paradigm shift replaces the traditional modular, pipelined machine learning approach with a simpler objective expressed through instructions. Our results show that finetuned FLAN-T5 with 1000x fewer parameters than the state-of-the-art GPT-davinci is competitive for the task.

cs.CL↗

arXiv2023

Scholarly Knowledge Graph Construction from Published Software Packages

The value of structured scholarly knowledge for research and society at large is well understood, but producing scholarly knowledge (i.e., knowledge traditionally published in articles) in structured form remains a challenge. We propose an approach for automatically extracting scholarly knowledge from published software packages by static analysis of their metadata and contents (scripts and data) and populating a scholarly knowledge graph with the extracted knowledge. Our approach is based on mining scientific software packages linked to article publications by extracting metadata and analyzing the Abstract Syntax Tree (AST) of the source code to obtain information about the used and produced data as well as operations performed on data. The resulting knowledge graph includes articles, software packages metadata, and computational techniques applied to input data utilized as materials in research work. The knowledge graph also includes the results reported as scholarly knowledge in articles.

cs.DL↗

arXiv2023

An Approach to Evaluate User Interfaces in a Scholarly Knowledge Communication Domain

The amount of research articles produced every day is overwhelming: scholarly knowledge is getting harder to communicate and easier to get lost. A possible solution is to represent the information in knowledge graphs: structures representing knowledge in networks of entities, their semantic types, and relationships between them. But this solution has its own drawback: given its very specific task, it requires new methods for designing and evaluating user interfaces. In this paper, we propose an approach for user interface evaluation in the knowledge communication domain. We base our methodology on the well-established Cognitive Walkthough approach but employ a different set of questions, tailoring the method towards domain-specific needs. We demonstrate our approach on a scholarly knowledge graph implementation called Open Research Knowledge Graph (ORKG).

cs.DL↗