Searcharxiv⌕ Search

arXiv subjects

S. K. Nechaev

Publications and source records attributed to S. K. Nechaev.

25 records · Page 2Linked to original sources

Unzipping of two random heteropolymers: Ground state energy and finite size effects

We have analyzed the dependence of average ground state energy per monomer, $e$, of the complex of two random heteropolymers with quenched sequences, on chain length, $n$, in the ensemble of chains with uniform distribution of primary sequences. Every chain monomer is randomly and independently chosen with the uniform probability distribution $p=1/c$ from a set of $c$ different types A, B, C, D, .... Monomers of the first chain could form saturating reversible bonds with monomers of the second chain. The bonds between similar monomer types (like A--A, B--B, C--C, etc.) have the attraction energy $u$, while the bonds between different monomer types (like A--B, A--D, B--D, etc.) have the attraction energy $v$. The main attention is paid to the computation of the normalized free energy $e(n)$ for intermediate chain lengths, $n$, and different ratios $a=\frac{v}{u}$ at sufficiently low temperatures when the entropic contribution of the loop formation is negligible compared to direct energetic interactions between chain monomers and the partition function of the chains is dominated by the ground state. The performed analysis allows one to derive the force, $f$, which is necessary to apply for unzipping of two random heteropolymer chains of equal lengths whose ends are separated by the distance $x$, averaged over all equally distributed primary structures at low temperatures for fixed values $a$ and $c$.

cond-mat.stat-mech↗

Random Hierarchical Matrices: Spectral Properties and Relation to Polymers on Disordered Trees

We study the statistical and dynamic properties of the systems characterized by an ultrametric space of states and translationary non-invariant symmetric transition matrices of the Parisi type subjected to "locally constant" randomization. Using the explicit expression for eigenvalues of such matrices, we compute the spectral density for the Gaussian distribution of matrix elements. We also compute the averaged "survival probability" (SP) having sense of the probability to find a system in the initial state by time $t$. Using the similarity between the averaged SP for locally constant randomized Parisi matrices and the partition function of directed polymers on disordered trees, we show that for times $t>t_{\rm cr}$ (where $t_{\rm cr}$ is some critical time) a "lacunary" structure of the ultrametric space occurs with the probability $1-{\rm const}/t$. This means that the escape from some bounded areas of the ultrametric space of states is locked and the kinetics is confined in these areas for infinitely long time.

cond-mat.dis-nn↗

Wetting transition on a one-dimensional disorder

We consider wetting of a one-dimensional random walk on a half-line $x\ge 0$ in a short-ranged potential located at the origin $x=0$. We demonstrate explicitly how the presence of a quenched chemical disorder affects the pinning-depinning transition point. For small disorders we develop a perturbative technique which enables us to compute explicitly the averaged temperature (energy) of the pinning transition. For strong disorder we compute the transition point both numerically and using the renormalization group approach. Our consideration is based on the following idea: the random potential can be viewed as a periodic potential with the period $n$ in the limit $n\to\infty$. The advantage of our approach stems from the ability to integrate exactly over all spatial degrees of freedoms in the model and to reduce the initial problem to the analysis of eigenvalues and eigenfunctions of some special non-Hermitian random matrix with disorder--dependent diagonal and constant off-diagonal coefficients. We show that even for strong disorder the shift of the averaged pinning point of the random walk in the ensemble of random realizations of substrate disorder is indistinguishable from the pinning point of the system with preaveraged (i.e. annealed) Boltzmann weight.

cond-mat.stat-mech↗

Necklace-Cloverleaf Transition in Associating RNA-like Diblock Copolymers

We consider a ${\rm A}_m{\rm B}_n$ diblock copolymer, whose links are capable of forming local reversible bonds with each other. We assume that the resulting structure of the bonds is RNA--like, i.e. topologically isomorphic to a tree. We show that, depending on the relative strengths of A--A, A--B and B--B contacts, such a polymer can be in one of two different states. Namely, if a self--association is preferable (i.e., A--A and B--B bonds are comparatively stronger than A--B contacts) then the polymer forms a typical randomly branched cloverleaf structure. On the contrary, if alternating association is preferable (i.e. A--B bonds are stronger than A--A and B--B contacts) then the polymer tends to form a generally linear necklace structure (with, probably, some rear side branches and loops, which do not influence the overall characteristics of the chain). The transition between cloverleaf and necklace states is studied in details and it is shown that it is a 2nd order phase transition.

cond-mat.soft↗

Statistics of randomly branched polymers in a semi-space

We investigate the statistical properties of a randomly branched 3--functional $N$--link polymer chain without excluded volume, whose one point is fixed at the distance $d$ from the impenetrable surface in a 3--dimensional space. Exactly solving the Dyson-type equation for the partition function $Z(N,d)=N^{-θ} e^{γN}$ in 3D, we find the "surface" critical exponent $θ={5/2}$, as well as the density profiles of 3--functional units and of dead ends. Our approach enables to compute also the pairwise correlation function of a randomly branched polymer in a 3D semi-space.

cond-mat.stat-mech↗

Topological percolation on a square lattice

We investigate the formation of an infinite cluster of entangled threads in a (2+1)-dimensional system. We demonstrate that topological percolation belongs to the universality class of the standard 2D bond percolation. We compute the topological percolation threshold and the critical exponents of topological phase transition. Our numerical check confirms well obtained analytical results.

cond-mat.stat-mech↗

On the Reactions A+A+...+A->0 at a One-Dimensional Periodic Lattice of Catalytic Centers: Exact Solution

The kinetics of the diffusion-controlled chemical reactions A+A+...+A->0 that occur at catalytic centers periodically arranged along a straight line is considered. Modes of the behavior of reaction probability W(t) were studied at different times and different densities of the catalyst. Within the Smoluchowski approximation, it was rigorously proved that at large times the function W(t) is independent of the lattice period. This means that, in the given asymptotic mode, the probability of the reaction on a lattice with a catalyst placed in each lattice site is the same as on a lattice with a catalyst placed in sparse sites.

cond-mat.stat-mech↗